Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012651.1

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Reverse (-)

11839 .. 12960

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012651.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggctaatgaagattctggtttgcttcgtcacgggttaaattcgcatggagtgaagcatagcatgaaagggatgctgagaatgaggtgggaaacgagaggtggtagaatagcaagtgatggtcattctgaagtggatgggagaaaggccaagtttctggcaaagggccagcaagctgccttgggaggtcagatgaatgatggagatagtgtagtcttggctttatcagcaatgccatgtcctggaaggagaaagcatagaaagatgaacatcggtatggaattatcttctcttcgaccaaagtatatgaactgtaatgtcagtgaggacaaggatgacagtttgtttgaagagtgtggagtttttgatggtgatgagctgactagtagatggggaaacaataaccagaaatcaattgaagctggtctcgaggatcctcatgatagattaggcatggcaaggataaagaagcggaaaacagtggcaatatcctgctttagtagagaaactgaggaagttcatcgccactatcatcatgttggaagccatcctgctgcaccacctctggtttttatggaaccaacattaaacaaaagggagaggtttaggggtatgaaacgcaagatgaacatcgccactatcagcccaagctctgaagaagtaagagctcactttcgcaaggaggaagcattgaggtattcagtctcggataggggattttgttacactgctctggatggtagaaagtctgcggtcgctcctctaacaaagatgaaaaagattgcccgatatcatgttatactcaaacctgataggccgcgccatatttacaccctgtgtctggtgcgggatgcagctgctagattgcctggaggtgtgggcaccagagcagatatttgtacactcatgcgcgactcacagtatctagtagaagacacctccgatgaacaacttaatcaagttgctagcaaaggactggacaggctgcactatgaagttgatccctgcgtcaagtatgatgggaagttgtgggtttatttacatcgaaatagaggggaggacgactttgaggacgatgctacatcatctgcctatgtaagaagaaggtaccgcggagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0019899 GO:0031011 GO:0031974 GO:0031981 GO:0032991 GO:0033202 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0070603 GO:0097346 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

42.3

Weight (kDa)

9.33

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1107
AccB1I	GGYRCC	2 cut(s)	881, 1107
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccII	CGCG	3 cut(s)	820, 912, 1113
AciI	CCGC	6 cut(s)	472, 752, 818, 847, 1111, 1113
AclWI	GGATC	3 cut(s)	428, 441, 995
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	2 cut(s)	150, 675
AdeI	CACNNNGTG	1 cut(s)	837
AfaI	GTAC	2 cut(s)	901, 1109
AfiI	CCNNNNNNNGG	2 cut(s)	242, 841
AgsI	TTSAA	2 cut(s)	350, 419
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	2 cut(s)	241, 868
AluBI	AGCT	6 cut(s)	176, 379, 422, 651, 668, 857
AluI	AGCT	6 cut(s)	176, 379, 422, 651, 668, 857
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	2 cut(s)	431, 709
AlwI	GGATC	3 cut(s)	428, 441, 995
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	3 cut(s)	147, 166, 815
ApeKI	GCWGC	5 cut(s)	176, 554, 854, 857, 985
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
Asp718I	GGTACC	1 cut(s)	1107
AspLEI	GCGC	2 cut(s)	822, 912
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	383
AsuNHI	GCTAGC	1 cut(s)	965
AvaI	CYCGRG	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	884
BamHI	GGATCC	1 cut(s)	433
BanI	GGYRCC	2 cut(s)	881, 1107
BanII	GRGCYC	1 cut(s)	670
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	5 cut(s)	163, 541, 844, 866, 972
BccI	CCATC	8 cut(s)	113, 131, 194, 362, 384, 555, 731, 1013
BciT130I	CCWGG	2 cut(s)	243, 870
BcoDI	GTCTC	2 cut(s)	431, 709
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	4 cut(s)	384, 861, 926, 966
BisI	GCNGC	6 cut(s)	177, 555, 818, 855, 858, 986
BlsI	GCNGC	6 cut(s)	178, 556, 819, 856, 859, 987
Bme1390I	CCNGG	2 cut(s)	243, 870
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	4 cut(s)	435, 579, 883, 1109
BmrFI	CCNGG	2 cut(s)	243, 870
BmsI	GCATC	3 cut(s)	63, 841, 1066
BmtI	GCTAGC	1 cut(s)	969
BpiI	GAAGAC	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	891
BsaBI	GATNNNNATC	2 cut(s)	269, 629
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	180, 1111
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 841
Bse1I	ACTGG	1 cut(s)	981
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	2 cut(s)	269, 629
BseBI	CCWGG	2 cut(s)	243, 870
BseDI	CCNNGG	2 cut(s)	180, 1111
BseGI	GGATG	6 cut(s)	78, 142, 340, 547, 742, 856
BseJI	GATNNNNATC	2 cut(s)	269, 629
BseLI	CCNNNNNNNGG	2 cut(s)	242, 841
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	68, 501
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	5 cut(s)	163, 541, 844, 866, 972
BsgI	GTGCAG	2 cut(s)	540, 971
Bsh1236I	CGCG	3 cut(s)	820, 912, 1113
Bsh1285I	CGRYCG	1 cut(s)	756
BshFI	GGCC	3 cut(s)	149, 168, 817
BshNI	GGYRCC	2 cut(s)	881, 1107
BsiEI	CGRYCG	1 cut(s)	756
BsiHKAI	GWGCWC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	242, 841
BsmAI	GTCTC	2 cut(s)	431, 709
BsnI	GGCC	3 cut(s)	149, 168, 817
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	670, 884
Bsp1407I	TGTACA	1 cut(s)	899
Bsp143I	GATC	2 cut(s)	433, 1000
BspACI	CCGC	6 cut(s)	472, 752, 818, 847, 1111, 1113
BspANI	GGCC	3 cut(s)	149, 168, 817
BspCNI	CTCAG	2 cut(s)	69, 502
BspFNI	CGCG	3 cut(s)	820, 912, 1113
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	4 cut(s)	435, 579, 883, 1109
BspOI	GCTAGC	1 cut(s)	969
BspPI	GGATC	3 cut(s)	428, 441, 995
BspT107I	GGYRCC	2 cut(s)	881, 1107
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	899
BsrI	ACTGG	1 cut(s)	981
BssECI	CCNNGG	2 cut(s)	180, 1111
BssMI	GATC	2 cut(s)	433, 1000
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	243, 870
Bst4CI	ACNGT	4 cut(s)	314, 341, 481, 921
Bst6I	CTCTTC	2 cut(s)	297, 345
BstAUI	TGTACA	1 cut(s)	899
BstC8I	GCNNGC	3 cut(s)	170, 174, 967
BstDEI	CTNAG	2 cut(s)	77, 510
BstDSI	CCRYGG	1 cut(s)	1111
BstF5I	GGATG	6 cut(s)	78, 142, 340, 547, 742, 856
BstFNI	CGCG	3 cut(s)	820, 912, 1113
BstHHI	GCGC	2 cut(s)	822, 912
BstKTI	GATC	2 cut(s)	436, 1003
BstMAI	GTCTC	2 cut(s)	431, 709
BstMBI	GATC	2 cut(s)	433, 1000
BstMCI	CGRYCG	1 cut(s)	756
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	2 cut(s)	243, 870
BstSCI	CCNGG	2 cut(s)	241, 868
BstSLI	GKGCMC	1 cut(s)	884
BstUI	CGCG	3 cut(s)	820, 912, 1113
BstV1I	GCAGC	5 cut(s)	163, 541, 844, 866, 972
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	3 cut(s)	149, 168, 817
BtgI	CCRYGG	1 cut(s)	1111
BtgZI	GCGATG	2 cut(s)	506, 616
BtsCI	GGATG	6 cut(s)	78, 142, 340, 547, 742, 856
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	328, 486, 726
Cac8I	GCNNGC	3 cut(s)	170, 174, 967
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	2 cut(s)	822, 912
Cfr13I	GGNCC	1 cut(s)	166
Cfr42I	CCGCGG	1 cut(s)	1114
CseI	GACGC	1 cut(s)	997
Csp6I	GTAC	2 cut(s)	900, 1108
CviAII	CATG	8 cut(s)	47, 64, 237, 440, 454, 536, 794, 907
CviQI	GTAC	2 cut(s)	900, 1108
DdeI	CTNAG	2 cut(s)	77, 510
DpnI	GATC	2 cut(s)	435, 1002
DpnII	GATC	2 cut(s)	433, 1000
DraIII	CACNNNGTG	1 cut(s)	837
Eam1104I	CTCTTC	2 cut(s)	297, 345
EarI	CTCTTC	2 cut(s)	297, 345
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	791
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	150, 675
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	241, 868
EcoRV	GATATC	1 cut(s)	791
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	8 cut(s)	50, 67, 240, 443, 457, 539, 797, 910
FatI	CATG	8 cut(s)	46, 63, 236, 439, 453, 535, 793, 906
FauI	CCCGC	1 cut(s)	840
Fnu4HI	GCNGC	6 cut(s)	177, 555, 818, 855, 858, 986
FokI	GGATG	6 cut(s)	85, 149, 347, 534, 749, 863
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	6 cut(s)	177, 555, 818, 855, 858, 986
FspBI	CTAG	4 cut(s)	384, 861, 926, 966
GlaI	GCGC	2 cut(s)	821, 911
GluI	GCNGC	6 cut(s)	177, 555, 818, 855, 858, 986
GsuI	CTGGAG	1 cut(s)	891
HaeIII	GGCC	3 cut(s)	149, 168, 817
HgaI	GACGC	1 cut(s)	997
HhaI	GCGC	2 cut(s)	822, 912
Hin1II	CATG	8 cut(s)	50, 67, 240, 443, 457, 539, 797, 910
Hin6I	GCGC	2 cut(s)	820, 910
HinP1I	GCGC	2 cut(s)	820, 910
HinfI	GANTC	2 cut(s)	14, 914
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	902
Hpy188I	TCNGA	5 cut(s)	130, 192, 655, 709, 943
Hpy188III	TCNNGA	3 cut(s)	428, 440, 734
Hpy8I	GTNNAC	1 cut(s)	902
HpyAV	CCTTC	2 cut(s)	240, 1098
HpyCH4III	ACNGT	4 cut(s)	314, 341, 481, 921
HpyCH4V	TGCA	3 cut(s)	557, 854, 988
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	77, 510
Hsp92II	CATG	8 cut(s)	50, 67, 240, 443, 457, 539, 797, 910
HspAI	GCGC	2 cut(s)	820, 910
KpnI	GGTACC	1 cut(s)	1111
KspI	CCGCGG	1 cut(s)	1114
Kzo9I	GATC	2 cut(s)	433, 1000
LmnI	GCTCC	1 cut(s)	763
Lsp1109I	GCAGC	5 cut(s)	163, 541, 844, 866, 972
LweI	GCATC	3 cut(s)	63, 841, 1066
MaeI	CTAG	4 cut(s)	384, 861, 926, 966
MaeIII	GTNAC	2 cut(s)	29, 722
MalI	GATC	2 cut(s)	435, 1002
MboI	GATC	2 cut(s)	433, 1000
MboII	GAAGA	7 cut(s)	23, 279, 284, 362, 668, 944, 1113
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	670, 884
MluCI	AATT	3 cut(s)	40, 281, 414
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	1 cut(s)	520
MseI	TTAA	3 cut(s)	38, 587, 954
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	857, 1113
MspR9I	CCNGG	2 cut(s)	243, 870
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	2 cut(s)	243, 870
MvnI	CGCG	3 cut(s)	820, 912, 1113
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	2 cut(s)	433, 1000
NheI	GCTAGC	1 cut(s)	965
NlaIII	CATG	8 cut(s)	50, 67, 240, 443, 457, 539, 797, 910
NlaIV	GGNNCC	4 cut(s)	435, 579, 883, 1109
NmuCI	GTSAC	1 cut(s)	29
PaeR7I	CTCGAG	1 cut(s)	428
PagI	TCATGA	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	6 cut(s)	178, 556, 819, 856, 859, 987
PleI	GAGTC	1 cut(s)	908
PpsI	GAGTC	1 cut(s)	908
Psp124BI	GAGCTC	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	241, 868
PspGI	CCWGG	2 cut(s)	241, 868
PspN4I	GGNNCC	4 cut(s)	435, 579, 883, 1109
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	2 cut(s)	901, 1109
RsaNI	GTAC	2 cut(s)	900, 1108
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	670
SacII	CCGCGG	1 cut(s)	1114
SaqAI	TTAA	3 cut(s)	38, 587, 954
SatI	GCNGC	6 cut(s)	177, 555, 818, 855, 858, 986
Sau3AI	GATC	2 cut(s)	433, 1000
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	2 cut(s)	243, 870
SduI	GDGCHC	2 cut(s)	670, 884
SfaNI	GCATC	3 cut(s)	63, 841, 1066
Sfr274I	CTCGAG	1 cut(s)	428
Sfr303I	CCGCGG	1 cut(s)	1114
SgrBI	CCGCGG	1 cut(s)	1114
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	3 cut(s)	40, 281, 414
SsiI	CCGC	6 cut(s)	472, 752, 818, 847, 1111, 1113
SspMI	CTAG	4 cut(s)	384, 861, 926, 966
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	2 cut(s)	241, 868
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	4 cut(s)	314, 341, 481, 921
TaqI	TCGA	3 cut(s)	295, 429, 1045
TasI	AATT	3 cut(s)	40, 281, 414
TatI	WGTACW	1 cut(s)	899
TauI	GCSGC	1 cut(s)	820
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	38, 587, 954
Tru9I	TTAA	3 cut(s)	38, 587, 954
TscAI	CASTG	3 cut(s)	328, 486, 733
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	5 cut(s)	176, 554, 854, 857, 985
Tsp45I	GTSAC	1 cut(s)	29
TspRI	CASTG	3 cut(s)	328, 486, 733
Van91I	CCANNNNNTGG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	428
XspI	CTAG	4 cut(s)	384, 861, 926, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.