Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8076904.1

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 551

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8076904.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 550 bp

atgccatgtcctggaaggagaaagcatagaaagatgaacatcggtatggaactatcttctcttcgaccaaagtatatgaactgtaatgtcagtgaggacaatgatgacaatttgtttgaagagtgtggagtttttgatggtgatgagttgactagtagatggggaaacaataatcagaaatcaattgaagctggtctcgaggatcctcatgacagattaggcatgtcaaggataaagaagcggaaaacagtggcaatatcctgctttagtagagaaactgaggatgttcaagagagatttcatcatgttggaagccatcctgctgcaccacctctggttttgatggaaccaacattaaacaaaagggagaggtttaggggtatgaaacgtaagatgaacatcgccactatcagcccaagctctgaagaagtaagagctcactttcgcaaggaggaagcattgaggtatttagtctcggataggggattttgttacactgctctggatggtagaaagtctgcggtcgctcctctaacaaagatgaaaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0019899 GO:0031011 GO:0031974 GO:0031981 GO:0032991 GO:0033202 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0070603 GO:0097346 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

21.03

Weight (kDa)

9.37

Isoelectric Point (pI)

71.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	11
AciI	CCGC	2 cut(s)	241, 521
AclWI	GGATC	2 cut(s)	197, 210
AcuI	CTGAAG	1 cut(s)	444
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	119, 188, 290
AhlI	ACTAGT	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	3 cut(s)	191, 420, 437
AluI	AGCT	3 cut(s)	191, 420, 437
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	2 cut(s)	200, 478
AlwI	GGATC	2 cut(s)	197, 210
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	5 cut(s)	131, 153, 324, 337, 500
BciT130I	CCWGG	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	200, 478
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	204, 348
BmrFI	CCNGG	1 cut(s)	12
BsaBI	GATNNNNATC	2 cut(s)	38, 398
BsaI	GGTCTC	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse8I	GATNNNNATC	2 cut(s)	38, 398
BseBI	CCWGG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	289, 316, 511
BseJI	GATNNNNATC	2 cut(s)	38, 398
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	525
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	2 cut(s)	200, 478
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	241, 521
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	204, 348
BspPI	GGATC	2 cut(s)	197, 210
BspTNI	GGTCTC	1 cut(s)	200
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	83, 250
Bst6I	CTCTTC	2 cut(s)	66, 114
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	289, 316, 511
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	2 cut(s)	200, 478
BstMBI	GATC	1 cut(s)	202
BstMCI	CGRYCG	1 cut(s)	525
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	289, 316, 511
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	3 cut(s)	97, 255, 495
CciI	TCATGA	1 cut(s)	208
CviAII	CATG	4 cut(s)	6, 209, 223, 305
CviJI	RGCY	5 cut(s)	191, 315, 414, 420, 437
CviKI_1	RGCY	5 cut(s)	191, 315, 414, 420, 437
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	66, 114
EarI	CTCTTC	2 cut(s)	66, 114
Ecl136II	GAGCTC	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	439
FaeI	CATG	4 cut(s)	9, 212, 226, 308
FaiI	YATR	9 cut(s)	7, 27, 47, 75, 77, 210, 224, 306, 383
FatI	CATG	4 cut(s)	5, 208, 222, 304
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	3 cut(s)	296, 303, 518
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	1 cut(s)	324
Hin1II	CATG	4 cut(s)	9, 212, 226, 308
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	177, 424, 478
Hpy188III	TCNNGA	4 cut(s)	197, 209, 290, 503
Hpy8I	GTNNAC	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	9
HpyCH4III	ACNGT	2 cut(s)	83, 250
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	4 cut(s)	9, 212, 226, 308
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	6 cut(s)	24, 177, 274, 320, 333, 488
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	4 cut(s)	48, 53, 131, 437
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	2 cut(s)	109, 183
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	9 cut(s)	88, 193, 216, 274, 342, 363, 445, 456, 540
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	4 cut(s)	9, 212, 226, 308
NlaIV	GGNNCC	2 cut(s)	204, 348
NspI	RCATGY	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	208
PflMI	CCANNNNNTGG	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	2 cut(s)	204, 348
PsuI	RGATCY	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	7 cut(s)	193, 334, 374, 391, 422, 439, 467
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	2 cut(s)	109, 183
SsiI	CCGC	2 cut(s)	241, 521
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	83, 250
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	64, 198
TasI	AATT	2 cut(s)	109, 183
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	3 cut(s)	97, 255, 502
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	5 cut(s)	50, 92, 290, 398, 410
TspRI	CASTG	3 cut(s)	97, 255, 502
Van91I	CCANNNNNTGG	1 cut(s)	11
XceI	RCATGY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.