FvH4_6g14840

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
9203699 .. 9205249
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14840.t1

Sequence Viewer

Length: 1551 bp
ATGGGATTCCCTTATAGATTGGGGAAGAAGCTTTCTCAGTCTTTTCTACACACACAATCTGGGCACTTGAAGCCCTCATCTTCTCGGAAACTCACACAAATATTACATAAATCCAAGAACCAATCCAATGCTCTAAGAGTTCTTGACCTCATCACCCCAAAACCAACCTTCACTGCATCTCGTCGCCAAGGCCATCTTCGGCTTATTCAGGGCGTTCTACACTCCGATTCCGATCAACTCAGCAACCCTTCTTTCCCTGCTTCACATTCATCAATACAATTCTCCAATTTGTTCGATGAGCTTTTCGATTCTAGCTCAGTTGACTCTCATTCATACCCAGAAAGCTTTAATTTTGATGCGAGTGTTATATCGCATGCGATAAGTTCATGTGGGTCTAAGCGTGATCTTCGTGGCGGGATTCAGTATCACTGTGCAGCAATACGAAGTGGGTTTGGGGCCAATGTTTATATAGGAAGCACTTTGATAAGCTTGTACAGTAAATGCAGTGAATTGGAGAGTGCGTATAAGGTGTTCGATGAAATGCCTGTCAGAAATGTGGTGTCATGGACAGCGATTATTTCGGGGTTTGCACAAGAGTGGCAGGTTGATGTGTGCTTGGAGCTTTTCAGTGAGATGAGAAACTCTGGTTTGAAGCCGAATGATTTTACGTATGCGAGTGTTTTGAGTGCTTGCACAGGCAGTGGAGCTCTTGGGCAAGGGAGATGTGCCCACGGCCAAACGATTCGATTGGGTTTTGACTCATATGTTCACATTGCGAATGCTTTGATGTCGATGTACTGTAAATGCGGCGCTGTTGAGGATGTCCTTTACATGTTTGAGAATTTGGATGGCAAAGACAATGTGTCTTGGAACACTATGATTGCAGGGTATGCGCAGCATGGGCTTGCGCTGCAGGCCATTGGTCTTTTTGAAGAAATGAAGACACGAGGTGTGGAACCGGACGCAATCACTTTACTCGGGGTGCTTTCTTCCTGTCGCCATGCAGGTCTTGTAAAAGAAGGTCGGCATTACTTCAATTCGATGGTTGAAGAACATGGCATTCAGCCTGAACTAGATCATTATTCGTGCATTGTTGATCTCCTTGGTCGGGCAGGTTTATTGGATGAGGCCCGAGATTTCATTGAAAAGATGCCTATTCGTCCCAACGCAGTTATTTGGGGCTCACTTCTTTCTTCTTGTAGGGTTCATGGGAGCGTTTGGATTGGCATCGAGGCTGCAGAGAGCAGGCTATTGATGGAGCCAGGGTGTGCTTCTACGCACGTGCAATTGGCAAACCTGTACGCTAGTCTAGGTTGTTGGGATGAAGCGGCAAGGGTAAGAAAACTGATGAAAGACAAGGGAATCAAGACAAGTCCTGGGTTCAGCTGGATTGAGATCAGCAACGAGGTTCACAGATTTAGAGCAGAAGACAGTTCAAACCCCAGAATGGTGCAAATAATTGGAGTCTTGGATAGTTTGGCAGACCACATGGTCAGCCTAAAAACTTCAGGTTGTGAGCTTCAAATGCAAGAGGAAGAGGATGCTTCATGA

Protein Analysis

517

Amino Acids

56.88

Weight (kDa)

6.13

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 123 - 247 1.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 184 - 231 1.7e-13 PPR repeat family
PPR PF01535 187 - 217 3.1e-06 PPR repeat
PPR_2 PF13041 286 - 331 1.1e-11 PPR repeat family
PPR PF01535 288 - 318 5.3e-09 PPR repeat
E_motif PF20431 408 - 465 4.2e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1490
Acc16I TGCGCA 1 cut(s) 894
Acc36I ACCTGC 3 cut(s) 592, 995, 1103
AciI CCGC 3 cut(s) 414, 807, 1328
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 1 cut(s) 841
AcuI CTGAAG 1 cut(s) 1491
AcvI CACGTG 1 cut(s) 1282
AdeI CACNNNGTG 1 cut(s) 950
AfaI GTAC 3 cut(s) 494, 797, 1301
AfiI CCNNNNNNNGG 2 cut(s) 1108, 1447
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 8 cut(s) 70, 652, 932, 1036, 1049, 1145, 1437, 1523
AhdI GACNNNNNGTC 1 cut(s) 862
AjnI CCWGG 2 cut(s) 1261, 1375
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AleI CACNNNNGTG 1 cut(s) 595
AluBI AGCT 9 cut(s) 31, 301, 315, 345, 489, 622, 707, 1386, 1519
AluI AGCT 9 cut(s) 31, 301, 315, 345, 489, 622, 707, 1386, 1519
Alw21I GWGCWC 1 cut(s) 709
Ama87I CYCGRG 2 cut(s) 977, 1131
AoxI GGCC 5 cut(s) 190, 456, 733, 915, 1128
ApeKI GCWGC 4 cut(s) 434, 895, 910, 1235
ApoI RAATTY 1 cut(s) 841
AspLEI GCGC 3 cut(s) 812, 895, 910
AspS9I GGNCC 2 cut(s) 456, 1129
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 2 cut(s) 977, 1131
BaeGI GKGCMC 2 cut(s) 66, 730
BanII GRGCYC 2 cut(s) 709, 1184
BauI CACGAG 1 cut(s) 945
BbrPI CACGTG 1 cut(s) 1282
BbsI GAAGAC 2 cut(s) 947, 1434
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 4 cut(s) 446, 897, 907, 1222
BccI CCATC 4 cut(s) 201, 842, 1036, 1249
BceAI ACGGC 1 cut(s) 748
BciT130I CCWGG 2 cut(s) 1263, 1377
BfaI CTAG 4 cut(s) 312, 1073, 1305, 1310
BfmI CTRYAG 2 cut(s) 911, 1236
BfoI RGCGCY 1 cut(s) 813
BfuAI ACCTGC 3 cut(s) 592, 995, 1103
BisI GCNGC 6 cut(s) 435, 808, 896, 911, 1236, 1329
BlsI GCNGC 6 cut(s) 436, 809, 897, 912, 1237, 1330
Bme1390I CCNGG 2 cut(s) 1263, 1377
BmeRI GACNNNNNGTC 1 cut(s) 862
BmeT110I CYCGRG 2 cut(s) 977, 1131
BmgT120I GGNCC 2 cut(s) 456, 1129
BmiI GGNNCC 3 cut(s) 457, 957, 1260
BmrFI CCNGG 2 cut(s) 1263, 1377
BmsI GCATC 5 cut(s) 185, 346, 1140, 1236, 1531
BpiI GAAGAC 2 cut(s) 947, 1434
BsaAI YACGTR 2 cut(s) 669, 1282
BsaBI GATNNNNATC 3 cut(s) 231, 1226, 1394
BsaJI CCNNGG 5 cut(s) 187, 730, 1102, 1262, 1376
BsaWI WCCGGW 1 cut(s) 958
BsaXI ACNNNNNCTCC 4 cut(s) 506, 536, 1250, 1280
Bsc4I CCNNNNNNNGG 2 cut(s) 1108, 1447
Bse3DI GCAATG 1 cut(s) 771
Bse8I GATNNNNATC 3 cut(s) 231, 1226, 1394
BseBI CCWGG 2 cut(s) 1263, 1377
BseDI CCNNGG 5 cut(s) 187, 730, 1102, 1262, 1376
BseGI GGATG 5 cut(s) 826, 853, 1129, 1327, 1546
BseJI GATNNNNATC 3 cut(s) 231, 1226, 1394
BseLI CCNNNNNNNGG 2 cut(s) 1108, 1447
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 3 cut(s) 50, 253, 330
BseSI GKGCMC 2 cut(s) 66, 730
BseXI GCAGC 4 cut(s) 446, 897, 907, 1222
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 5 cut(s) 192, 458, 735, 917, 1130
BsiHKAI GWGCWC 1 cut(s) 709
BsiHKCI CYCGRG 2 cut(s) 977, 1131
BsiSI CCGG 1 cut(s) 959
BslFI GGGAC 1 cut(s) 1146
BslI CCNNNNNNNGG 2 cut(s) 1108, 1447
BsmFI GGGAC 1 cut(s) 1146
BsmI GAATGC 2 cut(s) 784, 1059
BsnI GGCC 5 cut(s) 192, 458, 735, 917, 1130
BsoBI CYCGRG 2 cut(s) 977, 1131
Bsp1286I GDGCHC 4 cut(s) 66, 709, 730, 1184
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 5 cut(s) 232, 403, 1075, 1096, 1395
BspACI CCGC 3 cut(s) 414, 807, 1328
BspANI GGCC 5 cut(s) 192, 458, 735, 917, 1130
BspCNI CTCAG 3 cut(s) 49, 252, 329
BspHI TCATGA 1 cut(s) 1547
BspLI GGNNCC 3 cut(s) 457, 957, 1260
BspMAI CTGCAG 2 cut(s) 915, 1240
BspMI ACCTGC 3 cut(s) 592, 995, 1103
BsrDI GCAATG 1 cut(s) 771
BsrGI TGTACA 1 cut(s) 492
BssECI CCNNGG 5 cut(s) 187, 730, 1102, 1262, 1376
BssMI GATC 5 cut(s) 232, 403, 1075, 1096, 1395
BssSI CACGAG 1 cut(s) 945
BssT1I CCWWGG 2 cut(s) 187, 1102
Bst2BI CACGAG 1 cut(s) 945
Bst2UI CCWGG 2 cut(s) 1263, 1377
Bst4CI ACNGT 4 cut(s) 431, 497, 800, 1433
Bst6I CTCTTC 1 cut(s) 1530
BstAPI GCANNNNNTGC 1 cut(s) 890
BstAUI TGTACA 1 cut(s) 492
BstBAI YACGTR 2 cut(s) 669, 1282
BstC8I GCNNGC 5 cut(s) 375, 691, 906, 915, 1247
BstDEI CTNAG 5 cut(s) 36, 134, 239, 316, 396
BstDSI CCRYGG 1 cut(s) 730
BstF5I GGATG 5 cut(s) 826, 853, 1129, 1327, 1546
BstH2I RGCGCY 1 cut(s) 813
BstHHI GCGC 3 cut(s) 812, 895, 910
BstKTI GATC 5 cut(s) 235, 406, 1078, 1099, 1398
BstMBI GATC 5 cut(s) 232, 403, 1075, 1096, 1395
BstMWI GCNNNNNNNGC 6 cut(s) 70, 890, 901, 910, 914, 1525
BstNI CCWGG 2 cut(s) 1263, 1377
BstNSI RCATGY 2 cut(s) 377, 835
BstSCI CCNGG 2 cut(s) 1261, 1375
BstSFI CTRYAG 2 cut(s) 911, 1236
BstSLI GKGCMC 2 cut(s) 66, 730
BstSNI TACGTA 1 cut(s) 669
BstV1I GCAGC 4 cut(s) 446, 897, 907, 1222
BstV2I GAAGAC 2 cut(s) 947, 1434
BsuRI GGCC 5 cut(s) 192, 458, 735, 917, 1130
BtgI CCRYGG 1 cut(s) 730
BtsCI GGATG 5 cut(s) 826, 853, 1129, 1327, 1546
BtsI GCAGTG 3 cut(s) 171, 511, 706
BtsIMutI CAGTG 5 cut(s) 171, 427, 511, 634, 706
BveI ACCTGC 3 cut(s) 592, 995, 1103
Cac8I GCNNGC 5 cut(s) 375, 691, 906, 915, 1247
CciI TCATGA 1 cut(s) 1547
CfoI GCGC 3 cut(s) 812, 895, 910
Cfr13I GGNCC 2 cut(s) 456, 1129
CseI GACGC 1 cut(s) 971
Csp6I GTAC 3 cut(s) 493, 796, 1300
CviQI GTAC 3 cut(s) 493, 796, 1300
DdeI CTNAG 5 cut(s) 36, 134, 239, 316, 396
DpnI GATC 5 cut(s) 234, 405, 1077, 1098, 1397
DpnII GATC 5 cut(s) 232, 403, 1075, 1096, 1395
DraIII CACNNNGTG 1 cut(s) 950
DrdI GACNNNNNNGTC 1 cut(s) 1490
DriI GACNNNNNGTC 1 cut(s) 862
DseDI GACNNNNNNGTC 1 cut(s) 1490
EaeI YGGCCR 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 1530
Eam1105I GACNNNNNGTC 1 cut(s) 862
EarI CTCTTC 1 cut(s) 1530
Ecl136II GAGCTC 1 cut(s) 707
Eco105I TACGTA 1 cut(s) 669
Eco130I CCWWGG 2 cut(s) 187, 1102
Eco24I GRGCYC 2 cut(s) 709, 1184
Eco53kI GAGCTC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 1491
Eco72I CACGTG 1 cut(s) 1282
Eco88I CYCGRG 2 cut(s) 977, 1131
EcoICRI GAGCTC 1 cut(s) 707
EcoRII CCWGG 2 cut(s) 1261, 1375
EcoT14I CCWWGG 2 cut(s) 187, 1102
EcoT38I GRGCYC 2 cut(s) 709, 1184
ErhI CCWWGG 2 cut(s) 187, 1102
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 1 cut(s) 1146
FauI CCCGC 1 cut(s) 407
FauNDI CATATG 1 cut(s) 763
Fnu4HI GCNGC 6 cut(s) 435, 808, 896, 911, 1236, 1329
FokI GGATG 4 cut(s) 833, 860, 1136, 1334
FriOI GRGCYC 2 cut(s) 709, 1184
Fsp4HI GCNGC 6 cut(s) 435, 808, 896, 911, 1236, 1329
FspBI CTAG 4 cut(s) 312, 1073, 1305, 1310
FspI TGCGCA 1 cut(s) 894
GlaI GCGC 3 cut(s) 811, 894, 909
GluI GCNGC 6 cut(s) 435, 808, 896, 911, 1236, 1329
HaeII RGCGCY 1 cut(s) 813
HaeIII GGCC 5 cut(s) 192, 458, 735, 917, 1130
HapII CCGG 1 cut(s) 959
HgaI GACGC 1 cut(s) 971
HhaI GCGC 3 cut(s) 812, 895, 910
Hin6I GCGC 3 cut(s) 810, 893, 908
HinP1I GCGC 3 cut(s) 810, 893, 908
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 3 cut(s) 29, 343, 487
HinfI GANTC 9 cut(s) 6, 227, 308, 323, 418, 742, 758, 1362, 1464
HpaII CCGG 1 cut(s) 959
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 322, 769, 1411
Hpy188I TCNGA 4 cut(s) 87, 226, 232, 551
Hpy188III TCNNGA 3 cut(s) 143, 1366, 1548
Hpy8I GTNNAC 3 cut(s) 322, 769, 1411
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 3 cut(s) 178, 258, 1013
HpyCH4III ACNGT 4 cut(s) 431, 497, 800, 1433
HpyCH4IV ACGT 2 cut(s) 668, 1281
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 890, 901, 910, 914, 1525
HpyF3I CTNAG 5 cut(s) 36, 134, 239, 316, 396
HpySE526I ACGT 2 cut(s) 668, 1281
HspAI GCGC 3 cut(s) 810, 893, 908
Kzo9I GATC 5 cut(s) 232, 403, 1075, 1096, 1395
LmnI GCTCC 4 cut(s) 619, 704, 1212, 1258
Lsp1109I GCAGC 4 cut(s) 446, 897, 907, 1222
LweI GCATC 5 cut(s) 185, 346, 1140, 1236, 1531
MaeI CTAG 4 cut(s) 312, 1073, 1305, 1310
MaeII ACGT 2 cut(s) 668, 1281
MalI GATC 5 cut(s) 234, 405, 1077, 1098, 1397
MboI GATC 5 cut(s) 232, 403, 1075, 1096, 1395
MfeI CAATTG 1 cut(s) 1286
MhlI GDGCHC 4 cut(s) 66, 709, 730, 1184
MluCI AATT 8 cut(s) 278, 286, 349, 509, 841, 1036, 1286, 1458
MlyI GAGTC 3 cut(s) 317, 752, 1473
MnlI CCTC 9 cut(s) 85, 158, 811, 941, 1120, 1225, 1399, 1525, 1531
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 1386
MspI CCGG 1 cut(s) 959
MspR9I CCNGG 2 cut(s) 1263, 1377
MunI CAATTG 1 cut(s) 1286
Mva1269I GAATGC 2 cut(s) 784, 1059
MvaI CCWGG 2 cut(s) 1263, 1377
MwoI GCNNNNNNNGC 6 cut(s) 70, 890, 901, 910, 914, 1525
NdeI CATATG 1 cut(s) 763
NdeII GATC 5 cut(s) 232, 403, 1075, 1096, 1395
NlaIV GGNNCC 3 cut(s) 457, 957, 1260
NsbI TGCGCA 1 cut(s) 894
NspI RCATGY 2 cut(s) 377, 835
OliI CACNNNNGTG 1 cut(s) 595
PaeI GCATGC 1 cut(s) 377
PagI TCATGA 1 cut(s) 1547
PciI ACATGT 1 cut(s) 831
PctI GAATGC 2 cut(s) 784, 1059
PfeI GAWTC 6 cut(s) 6, 227, 308, 418, 742, 1362
PkrI GCNGC 6 cut(s) 436, 809, 897, 912, 1237, 1330
PleI GAGTC 3 cut(s) 317, 752, 1472
PmaCI CACGTG 1 cut(s) 1282
PmlI CACGTG 1 cut(s) 1282
PpsI GAGTC 3 cut(s) 317, 752, 1472
Ppu21I YACGTR 2 cut(s) 669, 1282
PscI ACATGT 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 709
Psp6I CCWGG 2 cut(s) 1261, 1375
PspCI CACGTG 1 cut(s) 1282
PspGI CCWGG 2 cut(s) 1261, 1375
PspN4I GGNNCC 3 cut(s) 457, 957, 1260
PspPI GGNCC 2 cut(s) 456, 1129
PsrI GAACNNNNNNTAC 2 cut(s) 515, 547
PstI CTGCAG 2 cut(s) 915, 1240
PvuII CAGCTG 1 cut(s) 1386
RsaI GTAC 3 cut(s) 494, 797, 1301
RsaNI GTAC 3 cut(s) 493, 796, 1300
RseI CAYNNNNRTG 1 cut(s) 595
SacI GAGCTC 1 cut(s) 709
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 6 cut(s) 435, 808, 896, 911, 1236, 1329
Sau3AI GATC 5 cut(s) 232, 403, 1075, 1096, 1395
Sau96I GGNCC 2 cut(s) 456, 1129
SchI GAGTC 3 cut(s) 317, 752, 1473
ScrFI CCNGG 2 cut(s) 1263, 1377
SduI GDGCHC 4 cut(s) 66, 709, 730, 1184
SfaNI GCATC 5 cut(s) 185, 346, 1140, 1236, 1531
SfcI CTRYAG 2 cut(s) 911, 1236
SmiMI CAYNNNNRTG 1 cut(s) 595
SnaBI TACGTA 1 cut(s) 669
SphI GCATGC 1 cut(s) 377
Sse9I AATT 8 cut(s) 278, 286, 349, 509, 841, 1036, 1286, 1458
SsiI CCGC 3 cut(s) 414, 807, 1328
SspI AATATT 1 cut(s) 102
SspMI CTAG 4 cut(s) 312, 1073, 1305, 1310
SstI GAGCTC 1 cut(s) 709
StyD4I CCNGG 2 cut(s) 1261, 1375
StyI CCWWGG 2 cut(s) 187, 1102
TaaI ACNGT 4 cut(s) 431, 497, 800, 1433
TaiI ACGT 2 cut(s) 671, 1284
TaqI TCGA 7 cut(s) 294, 306, 534, 745, 791, 1040, 1230
TasI AATT 8 cut(s) 278, 286, 349, 509, 841, 1036, 1286, 1458
TatI WGTACW 2 cut(s) 492, 795
TauI GCSGC 2 cut(s) 810, 1331
TfiI GAWTC 6 cut(s) 6, 227, 308, 418, 742, 1362
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 5 cut(s) 178, 434, 511, 634, 706
TseI GCWGC 4 cut(s) 434, 895, 910, 1235
TspRI CASTG 5 cut(s) 178, 434, 511, 634, 706
XapI RAATTY 1 cut(s) 841
XceI RCATGY 2 cut(s) 377, 835
XspI CTAG 4 cut(s) 312, 1073, 1305, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.