Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Forward (+)

7184404 .. 7185161

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0092100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACAAAAGTATACCCAAATGGTGCTGCTGCAGCAGCAGCCACGGCCAATGTCGCCGCCTACGAGGCTGAGCAGAAGCTGAGGGTTTCAGGATCCGAAGAGGCCACAGTGCTGACGGTGTGGAAGAAGTCGTTGCTGTTGAATTGCAACGGGTTTACGGTGTTTGACACCAAGGGAAATCTCGTCTTTAGGGTCGACAACTACTTGTCTGGCCGTAAAGGCGAGATCGTCCTCATGGACGCCTACGGCAAGCCTCTCCTCACCATCCGCCGCAAGAGGCTGAGCTTTGGGGATAACTGGATGGTTTACGACGGAGAGACGGCGGAGAATCCGCGGTTCTGCGTGAGGAAGAACGTGAACATGCTAAACAACAAGTACTTGGCGCAAGTGAACAACAAGAAGTCGGTGCTGTACCAGGTAGAAGGGTCGTACGCGCAGAGGTGCTGCGCCGTGTACGACGGAAAGAGGAGGAAGGTGGCGGAGATCAAGAGGAAGGAGGCGGCGGTGGGCGGAGTGGCGTTGGGAGTCGACGTCTTCCGCCTCGTCGTACAGCCCGATCTCGACACGTCGGTGGCCATGGCGTTTGTCATCCTCCTTGACCAGATGTACAGCTCGTCGTCGTCTTCTAGACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

211

Amino Acids

23.41

Weight (kDa)

9.55

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOR	PF04525	36 - 200	1.4e-38	LURP-one-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	534
AccI	GTMKAC	3 cut(s)	12, 195, 528
AccII	CGCG	2 cut(s)	334, 434
AclWI	GGATC	2 cut(s)	87, 100
AcoI	YGGCCR	3 cut(s)	45, 211, 573
AcyI	GRCGYC	2 cut(s)	240, 531
AfaI	GTAC	6 cut(s)	377, 413, 431, 455, 549, 608
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	567
AjnI	CCWGG	1 cut(s)	414
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	3 cut(s)	79, 285, 612
AluI	AGCT	3 cut(s)	79, 285, 612
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	87, 100
AlwNI	CAGNNNCTG	1 cut(s)	79
AoxI	GGCC	4 cut(s)	45, 102, 211, 573
ApeKI	GCWGC	6 cut(s)	26, 29, 32, 35, 38, 444
AspLEI	GCGC	3 cut(s)	385, 436, 449
AsuHPI	GGTGA	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	575
BamHI	GGATCC	1 cut(s)	92
BbsI	GAAGAC	2 cut(s)	526, 615
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	6 cut(s)	13, 16, 44, 47, 50, 431
BccI	CCATC	2 cut(s)	272, 295
BceAI	ACGGC	5 cut(s)	60, 198, 262, 336, 434
BciT130I	CCWGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	30
BglI	GCCNNNNNGGC	2 cut(s)	65, 219
BisI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 57, 271, 445, 501
BlpI	GCTNAGC	2 cut(s)	69, 281
BlsI	GCNGC	9 cut(s)	28, 31, 34, 37, 40, 58, 272, 446, 502
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	567
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	416
BpiI	GAAGAC	2 cut(s)	526, 615
Bpu10I	CCTNAGC	1 cut(s)	80
Bpu1102I	GCTNAGC	2 cut(s)	69, 281
BsaHI	GRCGYC	2 cut(s)	240, 531
BsaJI	CCNNGG	4 cut(s)	42, 171, 332, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bse1I	ACTGG	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	4 cut(s)	42, 171, 332, 576
BseGI	GGATG	3 cut(s)	264, 306, 588
BseMII	CTCAG	3 cut(s)	60, 71, 272
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	2 cut(s)	248, 481
BseXI	GCAGC	6 cut(s)	13, 16, 44, 47, 50, 431
Bsh1236I	CGCG	2 cut(s)	334, 434
BshFI	GGCC	4 cut(s)	47, 104, 213, 575
BsiWI	CGTACG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	311
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	4 cut(s)	47, 104, 213, 575
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	92, 225, 483, 556
Bsp1720I	GCTNAGC	2 cut(s)	69, 281
Bsp19I	CCATGG	1 cut(s)	576
BspANI	GGCC	4 cut(s)	47, 104, 213, 575
BspCNI	CTCAG	3 cut(s)	61, 72, 273
BspFNI	CGCG	2 cut(s)	334, 434
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	2 cut(s)	87, 100
BsrGI	TGTACA	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	42, 171, 332, 576
BssMI	GATC	4 cut(s)	92, 225, 483, 556
BssNAI	GTATAC	1 cut(s)	13
BssNI	GRCGYC	2 cut(s)	240, 531
BssT1I	CCWWGG	2 cut(s)	171, 576
Bst1107I	GTATAC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	3 cut(s)	109, 118, 160
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	2 cut(s)	240, 531
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	69, 80, 281
BstDSI	CCRYGG	3 cut(s)	42, 332, 576
BstF5I	GGATG	3 cut(s)	264, 306, 588
BstFNI	CGCG	2 cut(s)	334, 434
BstHHI	GCGC	3 cut(s)	385, 436, 449
BstKTI	GATC	4 cut(s)	95, 228, 486, 559
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	4 cut(s)	92, 225, 483, 556
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 35, 38, 44, 53, 65, 219
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	2 cut(s)	334, 434
BstV1I	GCAGC	6 cut(s)	13, 16, 44, 47, 50, 431
BstV2I	GAAGAC	2 cut(s)	526, 615
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BstZ17I	GTATAC	1 cut(s)	13
BsuRI	GGCC	4 cut(s)	47, 104, 213, 575
BtgI	CCRYGG	3 cut(s)	42, 332, 576
BtrI	CACGTC	1 cut(s)	567
BtsCI	GGATG	3 cut(s)	264, 306, 588
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	251
CaiI	CAGNNNCTG	1 cut(s)	79
CfoI	GCGC	3 cut(s)	385, 436, 449
Cfr42I	CCGCGG	1 cut(s)	335
CseI	GACGC	1 cut(s)	248
CsiI	ACCWGGT	1 cut(s)	414
Csp6I	GTAC	6 cut(s)	376, 412, 430, 454, 548, 607
CviAII	CATG	3 cut(s)	235, 361, 577
CviQI	GTAC	6 cut(s)	376, 412, 430, 454, 548, 607
DdeI	CTNAG	3 cut(s)	69, 80, 281
DpnI	GATC	4 cut(s)	94, 227, 485, 558
DpnII	GATC	4 cut(s)	92, 225, 483, 556
EaeI	YGGCCR	3 cut(s)	45, 211, 573
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	5 cut(s)	257, 338, 494, 525, 527
Eco130I	CCWWGG	2 cut(s)	171, 576
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	171, 576
ErhI	CCWWGG	2 cut(s)	171, 576
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	3 cut(s)	238, 364, 580
FaiI	YATR	4 cut(s)	13, 236, 362, 578
FatI	CATG	3 cut(s)	234, 360, 576
FblI	GTMKAC	3 cut(s)	12, 195, 528
Fnu4HI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 57, 271, 445, 501
FokI	GGATG	3 cut(s)	251, 313, 575
Fsp4HI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 57, 271, 445, 501
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	3 cut(s)	384, 435, 448
GluI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 57, 271, 445, 501
HaeIII	GGCC	4 cut(s)	47, 104, 213, 575
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	3 cut(s)	385, 436, 449
Hin1I	GRCGYC	2 cut(s)	240, 531
Hin1II	CATG	3 cut(s)	238, 364, 580
Hin6I	GCGC	3 cut(s)	383, 434, 447
HinP1I	GCGC	3 cut(s)	383, 434, 447
HincII	GTYRAC	2 cut(s)	196, 529
HindII	GTYRAC	2 cut(s)	196, 529
HinfI	GANTC	2 cut(s)	328, 525
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	8 cut(s)	13, 156, 196, 307, 358, 391, 454, 529
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	4 cut(s)	90, 487, 560, 627
Hpy8I	GTNNAC	8 cut(s)	13, 156, 196, 307, 358, 391, 454, 529
Hpy99I	CGWCG	7 cut(s)	314, 461, 533, 548, 571, 619, 622
HpyAV	CCTTC	3 cut(s)	416, 466, 487
HpyCH4III	ACNGT	3 cut(s)	109, 118, 160
HpyCH4IV	ACGT	4 cut(s)	354, 531, 566, 631
HpyCH4V	TGCA	2 cut(s)	32, 147
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 35, 38, 44, 53, 65, 219
HpyF3I	CTNAG	3 cut(s)	69, 80, 281
HpySE526I	ACGT	4 cut(s)	354, 531, 566, 631
Hsp92I	GRCGYC	2 cut(s)	240, 531
Hsp92II	CATG	3 cut(s)	238, 364, 580
HspAI	GCGC	3 cut(s)	383, 434, 447
KspI	CCGCGG	1 cut(s)	335
Kzo9I	GATC	4 cut(s)	92, 225, 483, 556
LpnPI	CCDG	6 cut(s)	75, 195, 283, 401, 428, 614
Lsp1109I	GCAGC	6 cut(s)	13, 16, 44, 47, 50, 431
MabI	ACCWGGT	1 cut(s)	414
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	4 cut(s)	354, 531, 566, 631
MalI	GATC	4 cut(s)	94, 227, 485, 558
MboI	GATC	4 cut(s)	92, 225, 483, 556
MboII	GAAGA	5 cut(s)	110, 136, 361, 526, 615
MflI	RGATCY	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	1 cut(s)	534
Mox20I	TGGCCA	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	575
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	2 cut(s)	334, 434
MwoI	GCNNNNNNNGC	7 cut(s)	32, 35, 38, 44, 53, 65, 219
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	4 cut(s)	92, 225, 483, 556
NlaIII	CATG	3 cut(s)	238, 364, 580
NlaIV	GGNNCC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	364
OliI	CACNNNNGTG	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 552
PfeI	GAWTC	1 cut(s)	328
Pfl23II	CGTACG	1 cut(s)	429
PkrI	GCNGC	9 cut(s)	28, 31, 34, 37, 40, 58, 272, 446, 502
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspLI	CGTACG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	6 cut(s)	377, 413, 431, 455, 549, 608
RsaNI	GTAC	6 cut(s)	376, 412, 430, 454, 548, 607
RseI	CAYNNNNRTG	1 cut(s)	569
SacII	CCGCGG	1 cut(s)	335
SalI	GTCGAC	2 cut(s)	194, 527
SatI	GCNGC	9 cut(s)	27, 30, 33, 36, 39, 57, 271, 445, 501
Sau3AI	GATC	4 cut(s)	92, 225, 483, 556
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	416
SexAI	ACCWGGT	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	30
Sfr303I	CCGCGG	1 cut(s)	335
SgrBI	CCGCGG	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	1 cut(s)	142
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	171, 576
TaaI	ACNGT	3 cut(s)	109, 118, 160
TaiI	ACGT	4 cut(s)	357, 534, 569, 634
TaqI	TCGA	3 cut(s)	195, 528, 561
TasI	AATT	1 cut(s)	142
TatI	WGTACW	2 cut(s)	375, 606
TauI	GCSGC	3 cut(s)	59, 273, 503
TfiI	GAWTC	1 cut(s)	328
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	6 cut(s)	26, 29, 32, 35, 38, 444
TspGWI	ACGGA	2 cut(s)	327, 474
TspRI	CASTG	1 cut(s)	114
XbaI	TCTAGA	1 cut(s)	626
XceI	RCATGY	1 cut(s)	364
XmiI	GTMKAC	3 cut(s)	12, 195, 528
XspI	CTAG	1 cut(s)	627
ZraI	GACGTC	1 cut(s)	532
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.