Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Reverse (-)

9205603 .. 9206844

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTTGGCTGAGCAATTGAAGCAGCATGAGGAGAGTTCGCTGGGGGCATCGTCATGTCAAATGGCTACTCGATGGAATTGTCATCAGAGGGACATAGTTGCTGCACAAATTCTGGTACGGATGGCTAATGAAGATTCTGGTTTGCTTCGTCACGAGTTAAATTTGGATGGGGTGAAGCGTAGCATGGATGGAATGCTGAGAATGAGGTGGGAAACGAGAGGTGATAGAATAGCAGGTGATAGTCATTTTGAAGTGGATAGGAGAAACACCAAGTTTCTTGCAAAGCGCCACGTAGCTGCCTTGGCAGGTCAGGTGAACGATGGAGATAGTCTAGTCTGGGCTTTGTCAGCAATGCCATGTCCTGGAAGGAGAAAGCATGGAAATATGAACATTGGTGAGGAACTATCTTCTCTTAGACCAAAGTATATGAACTATAGTGTCAGTGAGGACAATGATGACTATCTGTATGAAGGGTTCGGAGTTTCAGATGGTGATGAGCTGACTAATAGATGGGGAAACAATGATCAGAAATCCATTGTAGCTGATCTCGAGGATCCTCATGATAGAATAGGCGTGTCAAGGATAAAGAAGCGGAAAAGAGTGGCAATATCCTGCTTTAGTAGAGAAATTGAGGATGTTCAAGATAGTTTTCATCATGTTGGAAGCCTTCCTGCACCACCTCTGGTTTTGATGGAGCCAACATTCAACAAATGGGAAAGGTTCAGGGGTATGAAACCTAAGATGAACATCGCCACTATAAGCCCCAGCCCCAAAGAAGTAAGAGCTTACTTTCGTAAGGAGGAAGCTTTTTGGAATTTAGTCCCAGATAGAGGATTTTGTTACACTGCTCTGGATGGGAGAAAGTCTGCAGTCGCACCTCTAACAAACAGGAACATGAACATTTCCAGATATCATGTTATTCTCAAACCTGACAGGCCGCGTCATATTTACACCCTGTGTCTTGTGCGTGATGCAGCTGCTAGATTGCCTGGAGGTATGGGTACCAGAAGAGACATTTGTACACTCATGCGCGACTCACAATATCTAGCTGAAGACGTCTCTGATGAACAGCTTAACCAAGTTGCTAGCAGAGGACTGGACAGGCTGCACTATGAAGTTGATCCATGTGTTAAATTCAATGGGAAGGTGTGGGTATATTTACATCGAAATAGAGGGGAGGATGAATTTAAGGACAATGCTACATCATCTACTTATGTAAAAAGAAGGTACAGCAAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0019899 GO:0031011 GO:0031974 GO:0031981 GO:0032991 GO:0033202 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0070603 GO:0097346 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

414

Amino Acids

47.34

Weight (kDa)

8.89

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_2nd_NFRKB	PF25793	261 - 394	6.6e-49	NFRKB second winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
AatII	GACGTC	1 cut(s)	1059
Acc36I	ACCTGC	2 cut(s)	224, 296
Acc65I	GGTACC	1 cut(s)	1001
AccB1I	GGYRCC	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccII	CGCG	2 cut(s)	940, 1032
AciI	CCGC	2 cut(s)	592, 938
AclWI	GGATC	3 cut(s)	548, 561, 1115
AcsI	RAATTY	5 cut(s)	108, 160, 814, 1133, 1184
AcuI	CTGAAG	1 cut(s)	1071
AcyI	GRCGYC	1 cut(s)	1056
AdeI	CACNNNGTG	1 cut(s)	957
AfaI	GTAC	4 cut(s)	117, 1003, 1021, 1229
AfiI	CCNNNNNNNGG	2 cut(s)	362, 830
AgsI	TTSAA	5 cut(s)	19, 251, 641, 706, 1138
AjnI	CCWGG	2 cut(s)	361, 988
AluBI	AGCT	8 cut(s)	296, 499, 542, 785, 806, 977, 1049, 1072
AluI	AGCT	8 cut(s)	296, 499, 542, 785, 806, 977, 1049, 1072
Alw26I	GTCTC	2 cut(s)	1005, 1063
AlwI	GGATC	3 cut(s)	548, 561, 1115
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	1 cut(s)	935
ApeKI	GCWGC	6 cut(s)	22, 101, 296, 974, 977, 1105
ApoI	RAATTY	5 cut(s)	108, 160, 814, 1133, 1184
Asp718I	GGTACC	1 cut(s)	1001
AspLEI	GCGC	2 cut(s)	288, 1032
AsuHPI	GGTGA	6 cut(s)	184, 233, 248, 325, 407, 503
AsuNHI	GCTAGC	1 cut(s)	1085
AvaI	CYCGRG	1 cut(s)	548
BamHI	GGATCC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	1001
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	1059
BbvI	GCAGC	6 cut(s)	34, 88, 283, 964, 986, 1092
BccI	CCATC	9 cut(s)	66, 115, 161, 182, 314, 482, 504, 685, 848
BciT130I	CCWGG	2 cut(s)	363, 990
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	1005, 1063
BfaI	CTAG	4 cut(s)	332, 981, 1046, 1086
BfmI	CTRYAG	2 cut(s)	433, 867
BfoI	RGCGCY	1 cut(s)	289
BfuAI	ACCTGC	2 cut(s)	224, 296
BisI	GCNGC	7 cut(s)	23, 102, 297, 938, 975, 978, 1106
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	7 cut(s)	24, 103, 298, 939, 976, 979, 1107
Bme1390I	CCNGG	2 cut(s)	363, 990
BmeT110I	CYCGRG	1 cut(s)	548
BmiI	GGNNCC	3 cut(s)	555, 696, 1003
BmrFI	CCNGG	2 cut(s)	363, 990
BmsI	GCATC	2 cut(s)	56, 961
BmtI	GCTAGC	1 cut(s)	1089
BpiI	GAAGAC	1 cut(s)	1059
BpmI	CTGGAG	1 cut(s)	1011
Bpu1102I	GCTNAGC	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	292
BsaBI	GATNNNNATC	2 cut(s)	459, 746
BsaHI	GRCGYC	1 cut(s)	1056
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 830
Bse1I	ACTGG	1 cut(s)	1101
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	2 cut(s)	459, 746
BseBI	CCWGG	2 cut(s)	363, 990
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	6 cut(s)	126, 172, 193, 640, 859, 1186
BseJI	GATNNNNATC	2 cut(s)	459, 746
BseLI	CCNNNNNNNGG	2 cut(s)	362, 830
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	1101
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	6 cut(s)	34, 88, 283, 964, 986, 1092
BseYI	CCCAGC	2 cut(s)	40, 764
BsgI	GTGCAG	3 cut(s)	87, 657, 1091
Bsh1236I	CGCG	2 cut(s)	940, 1032
BshFI	GGCC	1 cut(s)	937
BshNI	GGYRCC	1 cut(s)	1001
BsiHKCI	CYCGRG	1 cut(s)	548
BslFI	GGGAC	2 cut(s)	104, 806
BslI	CCNNNNNNNGG	2 cut(s)	362, 830
BsmAI	GTCTC	2 cut(s)	1005, 1063
BsmBI	CGTCTC	1 cut(s)	1063
BsmFI	GGGAC	2 cut(s)	104, 806
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	937
BsoBI	CYCGRG	1 cut(s)	548
Bsp1407I	TGTACA	1 cut(s)	1019
Bsp143I	GATC	4 cut(s)	523, 544, 553, 1120
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	592, 938
BspANI	GGCC	1 cut(s)	937
BspCNI	CTCAG	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	940, 1032
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	3 cut(s)	555, 696, 1003
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	2 cut(s)	224, 296
BspOI	GCTAGC	1 cut(s)	1089
BspPI	GGATC	3 cut(s)	548, 561, 1115
BspT107I	GGYRCC	1 cut(s)	1001
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	1019
BsrI	ACTGG	1 cut(s)	1101
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	523, 544, 553, 1120
BssNI	GRCGYC	1 cut(s)	1056
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	363, 990
Bst6I	CTCTTC	1 cut(s)	1003
BstACI	GRCGYC	1 cut(s)	1056
BstAUI	TGTACA	1 cut(s)	1019
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	1087
BstDEI	CTNAG	4 cut(s)	9, 197, 413, 738
BstF5I	GGATG	6 cut(s)	126, 172, 193, 640, 859, 1186
BstFNI	CGCG	2 cut(s)	940, 1032
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	2 cut(s)	288, 1032
BstKTI	GATC	4 cut(s)	526, 547, 556, 1123
BstMAI	GTCTC	2 cut(s)	1005, 1063
BstMBI	GATC	4 cut(s)	523, 544, 553, 1120
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 302, 347
BstNI	CCWGG	2 cut(s)	363, 990
BstSCI	CCNGG	2 cut(s)	361, 988
BstSFI	CTRYAG	2 cut(s)	433, 867
BstUI	CGCG	2 cut(s)	940, 1032
BstV1I	GCAGC	6 cut(s)	34, 88, 283, 964, 986, 1092
BstV2I	GAAGAC	1 cut(s)	1059
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	937
BtgZI	GCGATG	1 cut(s)	733
BtsCI	GGATG	6 cut(s)	126, 172, 193, 640, 859, 1186
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	2 cut(s)	448, 843
BveI	ACCTGC	2 cut(s)	224, 296
Cac8I	GCNNGC	1 cut(s)	1087
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	2 cut(s)	288, 1032
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	4 cut(s)	116, 1002, 1020, 1228
CviQI	GTAC	4 cut(s)	116, 1002, 1020, 1228
DdeI	CTNAG	4 cut(s)	9, 197, 413, 738
DpnI	GATC	4 cut(s)	525, 546, 555, 1122
DpnII	GATC	4 cut(s)	523, 544, 553, 1120
DraIII	CACNNNGTG	1 cut(s)	957
Eam1104I	CTCTTC	1 cut(s)	1003
EarI	CTCTTC	1 cut(s)	1003
Eco130I	CCWWGG	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	911
Eco57I	CTGAAG	1 cut(s)	1071
Eco88I	CYCGRG	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	361, 988
EcoRV	GATATC	1 cut(s)	911
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	1063
FaqI	GGGAC	2 cut(s)	104, 806
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	7 cut(s)	23, 102, 297, 938, 975, 978, 1106
FokI	GGATG	6 cut(s)	133, 179, 200, 647, 866, 1193
Fsp4HI	GCNGC	7 cut(s)	23, 102, 297, 938, 975, 978, 1106
FspBI	CTAG	4 cut(s)	332, 981, 1046, 1086
GlaI	GCGC	2 cut(s)	287, 1031
GluI	GCNGC	7 cut(s)	23, 102, 297, 938, 975, 978, 1106
GsaI	CCCAGC	2 cut(s)	44, 768
GsuI	CTGGAG	1 cut(s)	1011
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	937
HgaI	GACGC	1 cut(s)	929
HhaI	GCGC	2 cut(s)	288, 1032
Hin1I	GRCGYC	1 cut(s)	1056
Hin6I	GCGC	2 cut(s)	286, 1030
HinP1I	GCGC	2 cut(s)	286, 1030
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	2 cut(s)	134, 1034
HphI	GGTGA	6 cut(s)	184, 233, 248, 325, 407, 503
Hpy166II	GTNNAC	2 cut(s)	316, 1022
Hpy188I	TCNGA	5 cut(s)	87, 479, 487, 528, 1063
Hpy188III	TCNNGA	6 cut(s)	152, 548, 560, 641, 851, 906
Hpy8I	GTNNAC	2 cut(s)	316, 1022
HpyAV	CCTTC	5 cut(s)	360, 464, 677, 1138, 1218
HpyCH4IV	ACGT	2 cut(s)	291, 1056
HpyCH4V	TGCA	6 cut(s)	104, 281, 674, 869, 974, 1108
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 302, 347
HpyF3I	CTNAG	4 cut(s)	9, 197, 413, 738
HpySE526I	ACGT	2 cut(s)	291, 1056
Hsp92I	GRCGYC	1 cut(s)	1056
HspAI	GCGC	2 cut(s)	286, 1030
KpnI	GGTACC	1 cut(s)	1005
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	523, 544, 553, 1120
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	6 cut(s)	34, 88, 283, 964, 986, 1092
LweI	GCATC	2 cut(s)	56, 961
MaeI	CTAG	4 cut(s)	332, 981, 1046, 1086
MaeII	ACGT	2 cut(s)	291, 1056
MaeIII	GTNAC	2 cut(s)	149, 839
MalI	GATC	4 cut(s)	525, 546, 555, 1122
MboI	GATC	4 cut(s)	523, 544, 553, 1120
MboII	GAAGA	4 cut(s)	143, 399, 1020, 1064
MfeI	CAATTG	1 cut(s)	14
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	8 cut(s)	14, 76, 108, 160, 627, 814, 1133, 1184
MlyI	GAGTC	1 cut(s)	1028
MmeI	TCCRAC	1 cut(s)	640
MseI	TTAA	4 cut(s)	158, 1074, 1131, 1188
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	977
MspR9I	CCNGG	2 cut(s)	363, 990
MunI	CAATTG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	2 cut(s)	363, 990
MvnI	CGCG	2 cut(s)	940, 1032
MwoI	GCNNNNNNNGC	3 cut(s)	19, 302, 347
NdeII	GATC	4 cut(s)	523, 544, 553, 1120
NheI	GCTAGC	1 cut(s)	1085
NlaIV	GGNNCC	3 cut(s)	555, 696, 1003
NmuCI	GTSAC	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	548
PagI	TCATGA	1 cut(s)	559
PaqCI	CACCTGC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	7 cut(s)	24, 103, 298, 939, 976, 979, 1107
PleI	GAGTC	1 cut(s)	1028
PpsI	GAGTC	1 cut(s)	1028
Ppu21I	YACGTR	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	361, 988
PspFI	CCCAGC	2 cut(s)	40, 764
PspGI	CCWGG	2 cut(s)	361, 988
PspN4I	GGNNCC	3 cut(s)	555, 696, 1003
PsrI	GAACNNNNNNTAC	2 cut(s)	458, 490
PstI	CTGCAG	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	4 cut(s)	117, 1003, 1021, 1229
RsaNI	GTAC	4 cut(s)	116, 1002, 1020, 1228
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	4 cut(s)	158, 1074, 1131, 1188
SatI	GCNGC	7 cut(s)	23, 102, 297, 938, 975, 978, 1106
Sau3AI	GATC	4 cut(s)	523, 544, 553, 1120
SchI	GAGTC	1 cut(s)	1028
ScrFI	CCNGG	2 cut(s)	363, 990
SfaNI	GCATC	2 cut(s)	56, 961
SfcI	CTRYAG	2 cut(s)	433, 867
Sfr274I	CTCGAG	1 cut(s)	548
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	8 cut(s)	14, 76, 108, 160, 627, 814, 1133, 1184
SsiI	CCGC	2 cut(s)	592, 938
SspMI	CTAG	4 cut(s)	332, 981, 1046, 1086
StyD4I	CCNGG	2 cut(s)	361, 988
StyI	CCWWGG	1 cut(s)	300
TaiI	ACGT	2 cut(s)	294, 1059
TaqI	TCGA	3 cut(s)	70, 549, 1165
TasI	AATT	8 cut(s)	14, 76, 108, 160, 627, 814, 1133, 1184
TatI	WGTACW	1 cut(s)	1019
TauI	GCSGC	1 cut(s)	940
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	4 cut(s)	158, 1074, 1131, 1188
Tru9I	TTAA	4 cut(s)	158, 1074, 1131, 1188
TscAI	CASTG	2 cut(s)	448, 850
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	6 cut(s)	22, 101, 296, 974, 977, 1105
Tsp45I	GTSAC	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	448, 850
Van91I	CCANNNNNTGG	1 cut(s)	362
XapI	RAATTY	5 cut(s)	108, 160, 814, 1133, 1184
XhoI	CTCGAG	1 cut(s)	548
XspI	CTAG	4 cut(s)	332, 981, 1046, 1086
ZraI	GACGTC	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.