Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Reverse (-)

12362696 .. 12364249

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG140600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGAATTCTCTTTCAGATTGGGGAAGAAACTATCTCAGTCTTTTTTACACACAATTTCTGGGCACTTGAAGCTCTCACCTTCTCGAAATCTCACACAAATATTACAAAAATCCAAGAACCAATCCAACGCTCTGAGAGTTCTTGACCTCATCACCCCAAAACCAACCTCCACTGCATCTCGTCGCCAAGGCCATCTTCGCCTCATTCAGGACGTTCTACACTCAGATTCCGATCAACTCAGCAACCCTTCTTCTTTCTCTGGTTCTCATTCATCAATACAGTTCTCTAATTTGTTTGATCAGCTATTCGATTCTAGCCCAGTTGATTCTCATTCATACCCAGAAAGCTTTACAATTGATGCGAGTGTTATTTCACATGCTATAAGCTCTTGTGGGTCTAAGCGTGATCTTCGTGGTGGGGTTCAGCATCACTGCGCTGCAGTACGAAGTGGGTTTGGGGCCAATGTTTATATAGGAAGCTCTTTGATACATTTGTACGGTAAATGCAGTGCGTTGGAGAATGCGTATAAGGTGTTCGATGAAATGCCTGTGAGAAATGTGGTGTCATGGACGGCGATTATTTCAGGGTTTGCACAAGAGTGGCAGGTTGATGTGTGCTTGGAGCTTTTCAGTGAAATGAGAAGCTCCGGATCGAAGCCGAATGATTTTACGTATGCAAGTGTTCTGAGTGCTTGCACAGGCAGTGGAGCTCTGGGGCAAGGGAGATGTGCTCATGGCCAAACGATTCGAATGGGTTTCGATTCGTATGTTCACATTGCTAATGCTTTGATGTCTATGTACTGCAAATGTGGCGCTGTTAAGGATGCGCTTTACATATTTGAAAGTCTGGATGGCAAAGACAATGTGTCTTGGAACTCCATGATTGCAGGGTATGCCCAGCACGGCCTTGTGCTGCAGGCCATTGATCTTTTTGAAGAAATGAAGAATCGAGGCGTGAAACCCGACGCCATTACTTTACTCGGGGTGCTCTCTTCGTGTCGCCACGCGGGTCTTGTGAAAGAAGGCTGGCATTACTTCAATTCGATGGTCGAAGAACATGGCATTCAGCCTGAACTAGATCATTATTCGTGCATTGTGGATCTCCTTGGTCGGGCAGGTTTATTGGACGAGGCTCGAGATTTTATTGAAAAGATGCCTATTCGTCCCAACGCCGTTATTTGGGGCTCGCTTCTTTCTTCTTGTAGGGTTCATGGGGGCGTCTGGATTGGCATTGAGGCTGCAGAGAGCAGGCTGTTGATGGAGCCAGGGTGTGCTTCTACCCATGTGCAATTGGCAAACCTGTACGCTAGTTTGGGTTGTTGGGATGAAGCAGCAAGAGTAAGAAAACTGATGAAAGACAAGGGAATCAAGACAAGTCCTGGGTTCAGCTGGATTGAGATCAGTAACGAAGTTCACAGATTTAGAGCAGAAGACAGTTCAAACCCCAGAATGATTCAAATAATTGGAGTCTTGGATAGTTTGGCAGACCACATGGTCCGCCTCAAAACTTCAGGTTGTGAGCTTCAAATGCAAGAGGAAGAGGATGCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

517

Amino Acids

56.93

Weight (kDa)

6.31

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	185 - 232	1.1e-12	PPR repeat family
PPR	PF01535	188 - 217	2.6e-06	PPR repeat
PPR_2	PF13041	287 - 332	4e-13	PPR repeat family
PPR	PF01535	289 - 319	5.2e-10	PPR repeat
E_motif	PF20431	409 - 466	4.8e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1493
Acc36I	ACCTGC	2 cut(s)	595, 1106
AccII	CGCG	1 cut(s)	1007
AccIII	TCCGGA	1 cut(s)	647
AciI	CCGC	2 cut(s)	1007, 1498
AclWI	GGATC	2 cut(s)	658, 1107
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	1494
AcyI	GRCGYC	2 cut(s)	966, 1218
AfaI	GTAC	4 cut(s)	444, 497, 800, 1304
AfiI	CCNNNNNNNGG	3 cut(s)	208, 1111, 1179
AgsI	TTSAA	8 cut(s)	70, 842, 935, 1039, 1148, 1440, 1457, 1526
AhdI	GACNNNNNGTC	1 cut(s)	865
AjnI	CCWGG	2 cut(s)	1264, 1378
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AleI	CACNNNNGTG	1 cut(s)	598
Alw21I	GWGCWC	3 cut(s)	712, 733, 990
AlwI	GGATC	2 cut(s)	658, 1107
Ama87I	CYCGRG	2 cut(s)	980, 1134
Aor13HI	TCCGGA	1 cut(s)	647
AoxI	GGCC	5 cut(s)	190, 459, 736, 904, 918
ApeKI	GCWGC	4 cut(s)	437, 913, 1238, 1331
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	3 cut(s)	437, 815, 829
AspS9I	GGNCC	2 cut(s)	459, 1495
AsuHPI	GGTGA	2 cut(s)	69, 145
AsuII	TTCGAA	1 cut(s)	748
AvaI	CYCGRG	2 cut(s)	980, 1134
AvaII	GGWCC	1 cut(s)	1495
BaeGI	GKGCMC	1 cut(s)	66
BaeI	ACNNNNGTAYC	2 cut(s)	479, 512
BalI	TGGCCA	1 cut(s)	738
BanII	GRGCYC	2 cut(s)	712, 1187
BbsI	GAAGAC	1 cut(s)	1437
Bbv12I	GWGCWC	3 cut(s)	712, 733, 990
BbvI	GCAGC	4 cut(s)	424, 900, 1225, 1343
BccI	CCATC	4 cut(s)	201, 845, 1039, 1252
BceAI	ACGGC	3 cut(s)	588, 919, 1157
BciT130I	CCWGG	2 cut(s)	1266, 1380
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	3 cut(s)	315, 1076, 1308
BfmI	CTRYAG	3 cut(s)	438, 914, 1239
BfoI	RGCGCY	1 cut(s)	816
BfuAI	ACCTGC	2 cut(s)	595, 1106
BisI	GCNGC	4 cut(s)	438, 914, 1239, 1332
BlsI	GCNGC	4 cut(s)	439, 915, 1240, 1333
Bme1390I	CCNGG	2 cut(s)	1266, 1380
Bme18I	GGWCC	1 cut(s)	1495
BmeRI	GACNNNNNGTC	1 cut(s)	865
BmeT110I	CYCGRG	2 cut(s)	980, 1134
BmgT120I	GGNCC	2 cut(s)	459, 1495
BmiI	GGNNCC	2 cut(s)	460, 1263
BmrFI	CCNGG	2 cut(s)	1266, 1380
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	6 cut(s)	185, 349, 436, 814, 1143, 1534
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	1437
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
Bpu14I	TTCGAA	1 cut(s)	748
BsaAI	YACGTR	1 cut(s)	672
BsaBI	GATNNNNATC	2 cut(s)	231, 1397
BsaHI	GRCGYC	2 cut(s)	966, 1218
BsaJI	CCNNGG	4 cut(s)	187, 1105, 1265, 1379
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	4 cut(s)	509, 539, 1253, 1283
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 1111, 1179
Bse1I	ACTGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	2 cut(s)	231, 1397
BseAI	TCCGGA	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	1266, 1380
BseDI	CCNNGG	4 cut(s)	187, 1105, 1265, 1379
BseGI	GGATG	4 cut(s)	829, 856, 1330, 1549
BseJI	GATNNNNATC	2 cut(s)	231, 1397
BseLI	CCNNNNNNNGG	3 cut(s)	208, 1111, 1179
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	5 cut(s)	50, 125, 237, 253, 677
BseNI	ACTGG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	424, 900, 1225, 1343
BseYI	CCCAGC	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	1007
BshFI	GGCC	5 cut(s)	192, 461, 738, 906, 920
BsiHKAI	GWGCWC	3 cut(s)	712, 733, 990
BsiHKCI	CYCGRG	2 cut(s)	980, 1134
BsiSI	CCGG	1 cut(s)	648
BslFI	GGGAC	1 cut(s)	1149
BslI	CCNNNNNNNGG	3 cut(s)	208, 1111, 1179
BsmFI	GGGAC	1 cut(s)	1149
BsmI	GAATGC	2 cut(s)	526, 1062
BsnI	GGCC	5 cut(s)	192, 461, 738, 906, 920
BsoBI	CYCGRG	2 cut(s)	980, 1134
Bsp119I	TTCGAA	1 cut(s)	748
Bsp1286I	GDGCHC	5 cut(s)	66, 712, 733, 990, 1187
Bsp13I	TCCGGA	1 cut(s)	647
Bsp143I	GATC	8 cut(s)	232, 298, 406, 650, 925, 1078, 1099, 1398
BspACI	CCGC	2 cut(s)	1007, 1498
BspANI	GGCC	5 cut(s)	192, 461, 738, 906, 920
BspCNI	CTCAG	5 cut(s)	49, 126, 236, 252, 678
BspEI	TCCGGA	1 cut(s)	647
BspFNI	CGCG	1 cut(s)	1007
BspLI	GGNNCC	2 cut(s)	460, 1263
BspMAI	CTGCAG	3 cut(s)	442, 918, 1243
BspMI	ACCTGC	2 cut(s)	595, 1106
BspPI	GGATC	2 cut(s)	658, 1107
BspT104I	TTCGAA	1 cut(s)	748
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	4 cut(s)	187, 1105, 1265, 1379
BssMI	GATC	8 cut(s)	232, 298, 406, 650, 925, 1078, 1099, 1398
BssNI	GRCGYC	2 cut(s)	966, 1218
BssT1I	CCWWGG	2 cut(s)	187, 1105
Bst2UI	CCWGG	2 cut(s)	1266, 1380
Bst4CI	ACNGT	3 cut(s)	282, 500, 1436
Bst6I	CTCTTC	2 cut(s)	997, 1533
BstACI	GRCGYC	2 cut(s)	966, 1218
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstBAI	YACGTR	1 cut(s)	672
BstBI	TTCGAA	1 cut(s)	748
BstC8I	GCNNGC	5 cut(s)	694, 918, 1028, 1187, 1250
BstDEI	CTNAG	6 cut(s)	36, 134, 223, 239, 399, 686
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	4 cut(s)	829, 856, 1330, 1549
BstFNI	CGCG	1 cut(s)	1007
BstH2I	RGCGCY	1 cut(s)	816
BstHHI	GCGC	3 cut(s)	437, 815, 829
BstKTI	GATC	8 cut(s)	235, 301, 409, 653, 928, 1081, 1102, 1401
BstMBI	GATC	8 cut(s)	232, 298, 406, 650, 925, 1078, 1099, 1398
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 198, 810, 893, 1528
BstNI	CCWGG	2 cut(s)	1266, 1380
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	1264, 1378
BstSFI	CTRYAG	3 cut(s)	438, 914, 1239
BstSLI	GKGCMC	1 cut(s)	66
BstSNI	TACGTA	1 cut(s)	672
BstUI	CGCG	1 cut(s)	1007
BstV1I	GCAGC	4 cut(s)	424, 900, 1225, 1343
BstV2I	GAAGAC	1 cut(s)	1437
BstX2I	RGATCY	1 cut(s)	1099
BstYI	RGATCY	1 cut(s)	1099
BsuRI	GGCC	5 cut(s)	192, 461, 738, 906, 920
BtsCI	GGATG	4 cut(s)	829, 856, 1330, 1549
BtsI	GCAGTG	4 cut(s)	171, 430, 514, 709
BtsIMutI	CAGTG	5 cut(s)	171, 430, 514, 637, 709
BveI	ACCTGC	2 cut(s)	595, 1106
Cac8I	GCNNGC	5 cut(s)	694, 918, 1028, 1187, 1250
CfoI	GCGC	3 cut(s)	437, 815, 829
Cfr13I	GGNCC	2 cut(s)	459, 1495
CseI	GACGC	2 cut(s)	974, 1207
Csp6I	GTAC	4 cut(s)	443, 496, 799, 1303
CviAII	CATG	9 cut(s)	377, 567, 734, 880, 1058, 1211, 1283, 1492, 1551
CviQI	GTAC	4 cut(s)	443, 496, 799, 1303
DdeI	CTNAG	6 cut(s)	36, 134, 223, 239, 399, 686
DpnI	GATC	8 cut(s)	234, 300, 408, 652, 927, 1080, 1101, 1400
DpnII	GATC	8 cut(s)	232, 298, 406, 650, 925, 1078, 1099, 1398
DrdI	GACNNNNNNGTC	1 cut(s)	1493
DriI	GACNNNNNGTC	1 cut(s)	865
DseDI	GACNNNNNNGTC	1 cut(s)	1493
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	2 cut(s)	997, 1533
Eam1105I	GACNNNNNGTC	1 cut(s)	865
EarI	CTCTTC	2 cut(s)	997, 1533
EciI	GGCGGA	1 cut(s)	1487
Ecl136II	GAGCTC	1 cut(s)	710
Eco105I	TACGTA	1 cut(s)	672
Eco130I	CCWWGG	2 cut(s)	187, 1105
Eco24I	GRGCYC	2 cut(s)	712, 1187
Eco47I	GGWCC	1 cut(s)	1495
Eco53kI	GAGCTC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	1494
Eco88I	CYCGRG	2 cut(s)	980, 1134
EcoICRI	GAGCTC	1 cut(s)	710
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	1264, 1378
EcoT14I	CCWWGG	2 cut(s)	187, 1105
EcoT38I	GRGCYC	2 cut(s)	712, 1187
ErhI	CCWWGG	2 cut(s)	187, 1105
FaeI	CATG	9 cut(s)	380, 570, 737, 883, 1061, 1214, 1286, 1495, 1554
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	1149
FatI	CATG	9 cut(s)	376, 566, 733, 879, 1057, 1210, 1282, 1491, 1550
FauI	CCCGC	1 cut(s)	1000
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	438, 914, 1239, 1332
FokI	GGATG	3 cut(s)	836, 863, 1337
FriOI	GRGCYC	2 cut(s)	712, 1187
Fsp4HI	GCNGC	4 cut(s)	438, 914, 1239, 1332
FspBI	CTAG	3 cut(s)	315, 1076, 1308
GlaI	GCGC	3 cut(s)	436, 814, 828
GluI	GCNGC	4 cut(s)	438, 914, 1239, 1332
GsaI	CCCAGC	1 cut(s)	901
HaeII	RGCGCY	1 cut(s)	816
HaeIII	GGCC	5 cut(s)	192, 461, 738, 906, 920
HapII	CCGG	1 cut(s)	648
HgaI	GACGC	2 cut(s)	974, 1207
HhaI	GCGC	3 cut(s)	437, 815, 829
Hin1I	GRCGYC	2 cut(s)	966, 1218
Hin1II	CATG	9 cut(s)	380, 570, 737, 883, 1061, 1214, 1286, 1495, 1554
Hin6I	GCGC	3 cut(s)	435, 813, 827
HinP1I	GCGC	3 cut(s)	435, 813, 827
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	9 cut(s)	227, 311, 326, 745, 761, 946, 1365, 1453, 1467
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	2 cut(s)	69, 145
Hpy166II	GTNNAC	2 cut(s)	772, 1414
Hpy188I	TCNGA	5 cut(s)	17, 135, 226, 232, 687
Hpy188III	TCNNGA	8 cut(s)	84, 143, 209, 648, 848, 1136, 1222, 1369
Hpy8I	GTNNAC	2 cut(s)	772, 1414
Hpy99I	CGWCG	2 cut(s)	186, 968
HpyAV	CCTTC	3 cut(s)	90, 258, 1016
HpyCH4III	ACNGT	3 cut(s)	282, 500, 1436
HpyCH4IV	ACGT	2 cut(s)	213, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 198, 810, 893, 1528
HpyF3I	CTNAG	6 cut(s)	36, 134, 223, 239, 399, 686
HpySE526I	ACGT	2 cut(s)	213, 671
Hsp92I	GRCGYC	2 cut(s)	966, 1218
Hsp92II	CATG	9 cut(s)	380, 570, 737, 883, 1061, 1214, 1286, 1495, 1554
HspAI	GCGC	3 cut(s)	435, 813, 827
Kpn2I	TCCGGA	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	8 cut(s)	232, 298, 406, 650, 925, 1078, 1099, 1398
LmnI	GCTCC	5 cut(s)	622, 650, 707, 1261, 1552
Lsp1109I	GCAGC	4 cut(s)	424, 900, 1225, 1343
LweI	GCATC	6 cut(s)	185, 349, 436, 814, 1143, 1534
MaeI	CTAG	3 cut(s)	315, 1076, 1308
MaeII	ACGT	2 cut(s)	213, 671
MaeIII	GTNAC	1 cut(s)	1403
MalI	GATC	8 cut(s)	234, 300, 408, 652, 927, 1080, 1101, 1400
MboI	GATC	8 cut(s)	232, 298, 406, 650, 925, 1078, 1099, 1398
MfeI	CAATTG	2 cut(s)	354, 1289
MflI	RGATCY	1 cut(s)	1099
MhlI	GDGCHC	5 cut(s)	66, 712, 733, 990, 1187
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	7 cut(s)	5, 54, 289, 354, 1039, 1289, 1461
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	1476
MmeI	TCCRAC	2 cut(s)	150, 495
MnlI	CCTC	9 cut(s)	158, 178, 212, 944, 1123, 1228, 1511, 1528, 1534
Mox20I	TGGCCA	1 cut(s)	738
MroI	TCCGGA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	1 cut(s)	819
MslI	CAYNNNNRTG	1 cut(s)	598
Msp20I	TGGCCA	1 cut(s)	738
MspA1I	CMGCKG	1 cut(s)	1389
MspI	CCGG	1 cut(s)	648
MspR9I	CCNGG	2 cut(s)	1266, 1380
MunI	CAATTG	2 cut(s)	354, 1289
Mva1269I	GAATGC	2 cut(s)	526, 1062
MvaI	CCWGG	2 cut(s)	1266, 1380
MvnI	CGCG	1 cut(s)	1007
MwoI	GCNNNNNNNGC	5 cut(s)	70, 198, 810, 893, 1528
NdeII	GATC	8 cut(s)	232, 298, 406, 650, 925, 1078, 1099, 1398
NlaIII	CATG	9 cut(s)	380, 570, 737, 883, 1061, 1214, 1286, 1495, 1554
NlaIV	GGNNCC	2 cut(s)	460, 1263
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	748
OliI	CACNNNNGTG	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	1134
PctI	GAATGC	2 cut(s)	526, 1062
PfeI	GAWTC	8 cut(s)	227, 311, 326, 745, 761, 946, 1365, 1453
PkrI	GCNGC	4 cut(s)	439, 915, 1240, 1333
PleI	GAGTC	1 cut(s)	1475
PpsI	GAGTC	1 cut(s)	1475
Ppu21I	YACGTR	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	712
Psp6I	CCWGG	2 cut(s)	1264, 1378
PspFI	CCCAGC	1 cut(s)	897
PspGI	CCWGG	2 cut(s)	1264, 1378
PspN4I	GGNNCC	2 cut(s)	460, 1263
PspPI	GGNCC	2 cut(s)	459, 1495
PsrI	GAACNNNNNNTAC	2 cut(s)	518, 550
PstI	CTGCAG	3 cut(s)	442, 918, 1243
PsuI	RGATCY	1 cut(s)	1099
PvuII	CAGCTG	1 cut(s)	1389
RsaI	GTAC	4 cut(s)	444, 497, 800, 1304
RsaNI	GTAC	4 cut(s)	443, 496, 799, 1303
RseI	CAYNNNNRTG	1 cut(s)	598
SacI	GAGCTC	1 cut(s)	712
SaqAI	TTAA	1 cut(s)	819
SatI	GCNGC	4 cut(s)	438, 914, 1239, 1332
Sau3AI	GATC	8 cut(s)	232, 298, 406, 650, 925, 1078, 1099, 1398
Sau96I	GGNCC	2 cut(s)	459, 1495
SchI	GAGTC	1 cut(s)	1476
ScrFI	CCNGG	2 cut(s)	1266, 1380
SduI	GDGCHC	5 cut(s)	66, 712, 733, 990, 1187
SfaNI	GCATC	6 cut(s)	185, 349, 436, 814, 1143, 1534
SfcI	CTRYAG	3 cut(s)	438, 914, 1239
Sfr274I	CTCGAG	1 cut(s)	1134
SfuI	TTCGAA	1 cut(s)	748
SinI	GGWCC	1 cut(s)	1495
SlaI	CTCGAG	1 cut(s)	1134
SmiMI	CAYNNNNRTG	1 cut(s)	598
SmlI	CTYRAG	1 cut(s)	1134
SmoI	CTYRAG	1 cut(s)	1134
SnaBI	TACGTA	1 cut(s)	672
Sse9I	AATT	7 cut(s)	5, 54, 289, 354, 1039, 1289, 1461
SsiI	CCGC	2 cut(s)	1007, 1498
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	3 cut(s)	315, 1076, 1308
SstI	GAGCTC	1 cut(s)	712
StyD4I	CCNGG	2 cut(s)	1264, 1378
StyI	CCWWGG	2 cut(s)	187, 1105
TaaI	ACNGT	3 cut(s)	282, 500, 1436
TaiI	ACGT	2 cut(s)	216, 674
TasI	AATT	7 cut(s)	5, 54, 289, 354, 1039, 1289, 1461
TatI	WGTACW	1 cut(s)	798
TfiI	GAWTC	8 cut(s)	227, 311, 326, 745, 761, 946, 1365, 1453
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TscAI	CASTG	5 cut(s)	178, 437, 514, 637, 709
TseI	GCWGC	4 cut(s)	437, 913, 1238, 1331
TspDTI	ATGAA	7 cut(s)	261, 324, 555, 956, 1199, 1341, 1367
TspRI	CASTG	5 cut(s)	178, 437, 514, 637, 709
VpaK11BI	GGWCC	1 cut(s)	1495
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	1134
XspI	CTAG	3 cut(s)	315, 1076, 1308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.