Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8172106.1

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Reverse (-)

255 .. 605

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8172106.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgaaaaagattgcccgatatcatgttatactcaaacctgataggccgcgccatatttacaccctgtgtctggtgcgggatgcagctgctagattgcctggaggtgtgggcaccagagcagatatttgtacactcatgcgcgactcacagtatctagtagaagacacctccgatgaacaacttaatcaagttgctagcaaaggactggacaggctgcactatgaagttgatccctgcgtcaagtatgatgggaagttgtgggtttatttacatcgaaatagaggggaggacgactttgaggacgatgctacatcatctgcctatgtaagaagaaggtaccgcggagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0019899 GO:0031011 GO:0031974 GO:0031981 GO:0032991 GO:0033202 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0070603 GO:0097346 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.47

Weight (kDa)

8.45

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	2 cut(s)	110, 336
AccII	CGCG	3 cut(s)	49, 141, 342
AciI	CCGC	4 cut(s)	47, 76, 340, 342
AclWI	GGATC	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	66
AfaI	GTAC	2 cut(s)	130, 338
AfiI	CCNNNNNNNGG	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	83, 86, 214
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	2 cut(s)	51, 141
AsuNHI	GCTAGC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	113
BanI	GGYRCC	2 cut(s)	110, 336
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	73, 95, 201
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	99
BfaI	CTAG	3 cut(s)	90, 155, 195
BisI	GCNGC	4 cut(s)	47, 84, 87, 215
BlsI	GCNGC	4 cut(s)	48, 85, 88, 216
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	112, 338
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	70, 295
BmtI	GCTAGC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	73, 95, 201
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	3 cut(s)	49, 141, 342
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	2 cut(s)	110, 336
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp1407I	TGTACA	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	4 cut(s)	47, 76, 340, 342
BspANI	GGCC	1 cut(s)	46
BspFNI	CGCG	3 cut(s)	49, 141, 342
BspLI	GGNNCC	2 cut(s)	112, 338
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	2 cut(s)	110, 336
BsrGI	TGTACA	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	150
BstAUI	TGTACA	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	3 cut(s)	49, 141, 342
BstHHI	GCGC	2 cut(s)	51, 141
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	113
BstUI	CGCG	3 cut(s)	49, 141, 342
BstV1I	GCAGC	3 cut(s)	73, 95, 201
BstV2I	GAAGAC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	2 cut(s)	51, 141
Cfr42I	CCGCGG	1 cut(s)	343
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	129, 337
CviAII	CATG	2 cut(s)	23, 136
CviJI	RGCY	3 cut(s)	46, 86, 214
CviKI_1	RGCY	3 cut(s)	46, 86, 214
CviQI	GTAC	2 cut(s)	129, 337
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraIII	CACNNNGTG	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	20
FaeI	CATG	2 cut(s)	26, 139
FaiI	YATR	7 cut(s)	24, 29, 54, 137, 222, 246, 324
FatI	CATG	2 cut(s)	22, 135
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	47, 84, 87, 215
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	4 cut(s)	47, 84, 87, 215
FspBI	CTAG	3 cut(s)	90, 155, 195
GlaI	GCGC	2 cut(s)	50, 140
GluI	GCNGC	4 cut(s)	47, 84, 87, 215
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	46
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	2 cut(s)	51, 141
Hin1II	CATG	2 cut(s)	26, 139
Hin6I	GCGC	2 cut(s)	49, 139
HinP1I	GCGC	2 cut(s)	49, 139
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	83, 217
Hsp92II	CATG	2 cut(s)	26, 139
HspAI	GCGC	2 cut(s)	49, 139
KpnI	GGTACC	1 cut(s)	340
KspI	CCGCGG	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	9 cut(s)	51, 56, 77, 84, 111, 127, 191, 196, 247
Lsp1109I	GCAGC	3 cut(s)	73, 95, 201
LweI	GCATC	2 cut(s)	70, 295
MaeI	CTAG	3 cut(s)	90, 155, 195
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	173, 342
MhlI	GDGCHC	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	95, 178, 275, 280, 292
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	2 cut(s)	86, 342
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	3 cut(s)	49, 141, 342
NdeII	GATC	1 cut(s)	229
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	26, 139
NlaIV	GGNNCC	2 cut(s)	112, 338
PkrI	GCNGC	4 cut(s)	48, 85, 88, 216
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	112, 338
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	130, 338
RsaNI	GTAC	2 cut(s)	129, 337
SacII	CCGCGG	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	4 cut(s)	47, 84, 87, 215
Sau3AI	GATC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	5 cut(s)	40, 88, 106, 170, 338
SfaNI	GCATC	2 cut(s)	70, 295
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SsiI	CCGC	4 cut(s)	47, 76, 340, 342
SspMI	CTAG	3 cut(s)	90, 155, 195
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	274
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	3 cut(s)	83, 86, 214
TspDTI	ATGAA	3 cut(s)	17, 189, 237
XspI	CTAG	3 cut(s)	90, 155, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.