Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37320 |
| fragaria_vesca | FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860 |
| malus_domestica | MD12G1130300.v1.1 |
| prunus_persica | Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1 |
| pyrus_communis | pycom12g12640 |
| rosa_chinensis | RchiOBHm_Chr3g0468071 |
| rosa_laevigata | RLG00000024452 RLG00000024453 RLG00000024454 |
| rosa_multiflora | Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100 |
| rosa_rugosa | Rorug03G0092100 Rorug03G0092200 Rorug03G0092300 |
| rosa_samantha | Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600 |
| rosa_wichuraiana | Rw3G013280 Rw3G013290 Rw3G013300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 358 |
| Acc36I | ACCTGC | 1 cut(s) | 613 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1194 |
| AccII | CGCG | 1 cut(s) | 196 |
| AciI | CCGC | 1 cut(s) | 202 |
| AclWI | GGATC | 1 cut(s) | 1247 |
| AcoI | YGGCCR | 2 cut(s) | 477, 1123 |
| AcsI | RAATTY | 3 cut(s) | 9, 286, 859 |
| AcuI | CTGAAG | 1 cut(s) | 241 |
| AfaI | GTAC | 3 cut(s) | 782, 815, 1302 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1194 |
| AflIII | ACRYGT | 1 cut(s) | 113 |
| AjnI | CCWGG | 1 cut(s) | 1393 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 198, 230 |
| AleI | CACNNNNGTG | 1 cut(s) | 616 |
| AluBI | AGCT | 8 cut(s) | 139, 336, 405, 498, 510, 643, 725, 1404 |
| AluI | AGCT | 8 cut(s) | 139, 336, 405, 498, 510, 643, 725, 1404 |
| Alw21I | GWGCWC | 3 cut(s) | 727, 748, 1005 |
| Alw26I | GTCTC | 2 cut(s) | 652, 1031 |
| AlwI | GGATC | 1 cut(s) | 1247 |
| AoxI | GGCC | 5 cut(s) | 208, 477, 919, 1039, 1123 |
| ApeKI | GCWGC | 5 cut(s) | 455, 640, 961, 1253, 1346 |
| ApoI | RAATTY | 3 cut(s) | 9, 286, 859 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AspLEI | GCGC | 4 cut(s) | 196, 359, 844, 1289 |
| AsuC2I | CCSGG | 2 cut(s) | 548, 1127 |
| AsuHPI | GGTGA | 2 cut(s) | 163, 517 |
| AsuNHI | GCTAGC | 1 cut(s) | 1322 |
| BalI | TGGCCA | 1 cut(s) | 479 |
| BanII | GRGCYC | 2 cut(s) | 727, 1202 |
| BbsI | GAAGAC | 2 cut(s) | 408, 1452 |
| Bbv12I | GWGCWC | 3 cut(s) | 727, 748, 1005 |
| BbvI | GCAGC | 5 cut(s) | 467, 652, 973, 1240, 1358 |
| BccI | CCATC | 4 cut(s) | 219, 358, 760, 860 |
| BciT130I | CCWGG | 1 cut(s) | 1395 |
| BclI | TGATCA | 1 cut(s) | 1062 |
| BcnI | CCSGG | 2 cut(s) | 548, 1127 |
| BcoDI | GTCTC | 2 cut(s) | 652, 1031 |
| BfaI | CTAG | 4 cut(s) | 333, 995, 1091, 1323 |
| BfmI | CTRYAG | 3 cut(s) | 236, 1216, 1254 |
| BfuAI | ACCTGC | 1 cut(s) | 613 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 207 |
| BisI | GCNGC | 6 cut(s) | 202, 456, 641, 962, 1254, 1347 |
| BlsI | GCNGC | 6 cut(s) | 203, 457, 642, 963, 1255, 1348 |
| Bme1390I | CCNGG | 3 cut(s) | 548, 1127, 1395 |
| BmiI | GGNNCC | 1 cut(s) | 1278 |
| BmrFI | CCNGG | 3 cut(s) | 548, 1127, 1395 |
| BmsI | GCATC | 7 cut(s) | 367, 512, 619, 829, 970, 1158, 1546 |
| BmtI | GCTAGC | 1 cut(s) | 1326 |
| BpiI | GAAGAC | 2 cut(s) | 408, 1452 |
| BpmI | CTGGAG | 1 cut(s) | 1295 |
| BpuMI | CCSGG | 2 cut(s) | 548, 1127 |
| BsaAI | YACGTR | 1 cut(s) | 687 |
| BsaI | GGTCTC | 1 cut(s) | 1031 |
| BsaJI | CCNNGG | 3 cut(s) | 205, 430, 1394 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1268, 1298 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1194 |
| Bse3DI | GCAATG | 4 cut(s) | 268, 748, 789, 971 |
| BseBI | CCWGG | 1 cut(s) | 1395 |
| BseDI | CCNNGG | 3 cut(s) | 205, 430, 1394 |
| BseGI | GGATG | 6 cut(s) | 322, 771, 835, 871, 1337, 1345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1194 |
| BseMI | GCAATG | 4 cut(s) | 268, 748, 789, 971 |
| BseMII | CTCAG | 1 cut(s) | 692 |
| BseXI | GCAGC | 5 cut(s) | 467, 652, 973, 1240, 1358 |
| BsgI | GTGCAG | 1 cut(s) | 474 |
| Bsh1236I | CGCG | 1 cut(s) | 196 |
| BshFI | GGCC | 5 cut(s) | 210, 479, 921, 1041, 1125 |
| BsiHKAI | GWGCWC | 3 cut(s) | 727, 748, 1005 |
| BsiSI | CCGG | 3 cut(s) | 547, 1042, 1126 |
| BslFI | GGGAC | 1 cut(s) | 1164 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1194 |
| BsmAI | GTCTC | 2 cut(s) | 652, 1031 |
| BsmFI | GGGAC | 1 cut(s) | 1164 |
| BsmI | GAATGC | 1 cut(s) | 544 |
| BsnI | GGCC | 5 cut(s) | 210, 479, 921, 1041, 1125 |
| Bso31I | GGTCTC | 1 cut(s) | 1031 |
| Bsp1286I | GDGCHC | 4 cut(s) | 727, 748, 1005, 1202 |
| Bsp1407I | TGTACA | 2 cut(s) | 780, 1300 |
| Bsp143I | GATC | 5 cut(s) | 940, 1062, 1093, 1114, 1239 |
| Bsp19I | CCATGG | 1 cut(s) | 430 |
| BspACI | CCGC | 1 cut(s) | 202 |
| BspANI | GGCC | 5 cut(s) | 210, 479, 921, 1041, 1125 |
| BspCNI | CTCAG | 1 cut(s) | 693 |
| BspFNI | CGCG | 1 cut(s) | 196 |
| BspLI | GGNNCC | 1 cut(s) | 1278 |
| BspMAI | CTGCAG | 1 cut(s) | 1258 |
| BspMI | ACCTGC | 1 cut(s) | 613 |
| BspOI | GCTAGC | 1 cut(s) | 1326 |
| BspPI | GGATC | 1 cut(s) | 1247 |
| BspTNI | GGTCTC | 1 cut(s) | 1031 |
| BsrDI | GCAATG | 4 cut(s) | 268, 748, 789, 971 |
| BsrGI | TGTACA | 2 cut(s) | 780, 1300 |
| BssECI | CCNNGG | 3 cut(s) | 205, 430, 1394 |
| BssMI | GATC | 5 cut(s) | 940, 1062, 1093, 1114, 1239 |
| BssT1I | CCWWGG | 2 cut(s) | 205, 430 |
| Bst2UI | CCWGG | 1 cut(s) | 1395 |
| Bst4CI | ACNGT | 4 cut(s) | 240, 324, 452, 1451 |
| Bst6I | CTCTTC | 4 cut(s) | 103, 1012, 1137, 1539 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 908 |
| BstAUI | TGTACA | 2 cut(s) | 780, 1300 |
| BstBAI | YACGTR | 1 cut(s) | 687 |
| BstC8I | GCNNGC | 7 cut(s) | 382, 634, 638, 709, 1001, 1265, 1324 |
| BstDEI | CTNAG | 3 cut(s) | 84, 152, 701 |
| BstDSI | CCRYGG | 1 cut(s) | 430 |
| BstF5I | GGATG | 6 cut(s) | 322, 771, 835, 871, 1337, 1345 |
| BstFNI | CGCG | 1 cut(s) | 196 |
| BstHHI | GCGC | 4 cut(s) | 196, 359, 844, 1289 |
| BstKTI | GATC | 5 cut(s) | 943, 1065, 1096, 1117, 1242 |
| BstMAI | GTCTC | 2 cut(s) | 652, 1031 |
| BstMBI | GATC | 5 cut(s) | 940, 1062, 1093, 1114, 1239 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 207, 908, 932, 1534 |
| BstNI | CCWGG | 1 cut(s) | 1395 |
| BstNSI | RCATGY | 1 cut(s) | 398 |
| BstSCI | CCNGG | 3 cut(s) | 546, 1125, 1393 |
| BstSFI | CTRYAG | 3 cut(s) | 236, 1216, 1254 |
| BstSNI | TACGTA | 1 cut(s) | 687 |
| BstUI | CGCG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 5 cut(s) | 467, 652, 973, 1240, 1358 |
| BstV2I | GAAGAC | 2 cut(s) | 408, 1452 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 766 |
| BsuRI | GGCC | 5 cut(s) | 210, 479, 921, 1041, 1125 |
| BtgI | CCRYGG | 1 cut(s) | 430 |
| BtgZI | GCGATG | 1 cut(s) | 105 |
| BtsCI | GGATG | 6 cut(s) | 322, 771, 835, 871, 1337, 1345 |
| BtsI | GCAGTG | 3 cut(s) | 189, 724, 1202 |
| BtsIMutI | CAGTG | 5 cut(s) | 189, 448, 655, 724, 1202 |
| BveI | ACCTGC | 1 cut(s) | 613 |
| Cac8I | GCNNGC | 7 cut(s) | 382, 634, 638, 709, 1001, 1265, 1324 |
| CfoI | GCGC | 4 cut(s) | 196, 359, 844, 1289 |
| CseI | GACGC | 3 cut(s) | 185, 915, 1352 |
| Csp6I | GTAC | 3 cut(s) | 781, 814, 1301 |
| CviQI | GTAC | 3 cut(s) | 781, 814, 1301 |
| DdeI | CTNAG | 3 cut(s) | 84, 152, 701 |
| DpnI | GATC | 5 cut(s) | 942, 1064, 1095, 1116, 1241 |
| DpnII | GATC | 5 cut(s) | 940, 1062, 1093, 1114, 1239 |
| EaeI | YGGCCR | 2 cut(s) | 477, 1123 |
| Eam1104I | CTCTTC | 4 cut(s) | 103, 1012, 1137, 1539 |
| EarI | CTCTTC | 4 cut(s) | 103, 1012, 1137, 1539 |
| Ecl136II | GAGCTC | 1 cut(s) | 725 |
| Eco105I | TACGTA | 1 cut(s) | 687 |
| Eco130I | CCWWGG | 2 cut(s) | 205, 430 |
| Eco24I | GRGCYC | 2 cut(s) | 727, 1202 |
| Eco31I | GGTCTC | 1 cut(s) | 1031 |
| Eco53kI | GAGCTC | 1 cut(s) | 725 |
| Eco57I | CTGAAG | 1 cut(s) | 241 |
| EcoICRI | GAGCTC | 1 cut(s) | 725 |
| EcoRI | GAATTC | 1 cut(s) | 9 |
| EcoRII | CCWGG | 1 cut(s) | 1393 |
| EcoT14I | CCWWGG | 2 cut(s) | 205, 430 |
| EcoT38I | GRGCYC | 2 cut(s) | 727, 1202 |
| ErhI | CCWWGG | 2 cut(s) | 205, 430 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 77, 109, 198, 230, 828, 860 |
| FaqI | GGGAC | 1 cut(s) | 1164 |
| FauNDI | CATATG | 1 cut(s) | 409 |
| FbaI | TGATCA | 1 cut(s) | 1062 |
| Fnu4HI | GCNGC | 6 cut(s) | 202, 456, 641, 962, 1254, 1347 |
| FokI | GGATG | 6 cut(s) | 329, 778, 842, 878, 1344, 1352 |
| FriOI | GRGCYC | 2 cut(s) | 727, 1202 |
| Fsp4HI | GCNGC | 6 cut(s) | 202, 456, 641, 962, 1254, 1347 |
| FspBI | CTAG | 4 cut(s) | 333, 995, 1091, 1323 |
| FspI | TGCGCA | 1 cut(s) | 358 |
| GlaI | GCGC | 4 cut(s) | 195, 358, 843, 1288 |
| GluI | GCNGC | 6 cut(s) | 202, 456, 641, 962, 1254, 1347 |
| GsuI | CTGGAG | 1 cut(s) | 1295 |
| HaeIII | GGCC | 5 cut(s) | 210, 479, 921, 1041, 1125 |
| HapII | CCGG | 3 cut(s) | 547, 1042, 1126 |
| HgaI | GACGC | 3 cut(s) | 185, 915, 1352 |
| HhaI | GCGC | 4 cut(s) | 196, 359, 844, 1289 |
| Hin6I | GCGC | 4 cut(s) | 194, 357, 842, 1287 |
| HinP1I | GCGC | 4 cut(s) | 194, 357, 842, 1287 |
| HinfI | GANTC | 6 cut(s) | 245, 281, 329, 344, 439, 1408 |
| HpaII | CCGG | 3 cut(s) | 547, 1042, 1126 |
| HphI | GGTGA | 2 cut(s) | 163, 517 |
| Hpy166II | GTNNAC | 1 cut(s) | 1429 |
| Hpy188I | TCNGA | 8 cut(s) | 244, 250, 280, 372, 702, 765, 1359, 1413 |
| Hpy188III | TCNNGA | 4 cut(s) | 37, 161, 227, 1034 |
| Hpy8I | GTNNAC | 1 cut(s) | 1429 |
| Hpy99I | CGWCG | 1 cut(s) | 201 |
| HpyAV | CCTTC | 2 cut(s) | 100, 1031 |
| HpyCH4III | ACNGT | 4 cut(s) | 240, 324, 452, 1451 |
| HpyCH4IV | ACGT | 2 cut(s) | 115, 686 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 207, 908, 932, 1534 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 152, 701 |
| HpySE526I | ACGT | 2 cut(s) | 115, 686 |
| HspAI | GCGC | 4 cut(s) | 194, 357, 842, 1287 |
| Ksp22I | TGATCA | 1 cut(s) | 1062 |
| Kzo9I | GATC | 5 cut(s) | 940, 1062, 1093, 1114, 1239 |
| LmnI | GCTCC | 2 cut(s) | 722, 1276 |
| Lsp1109I | GCAGC | 5 cut(s) | 467, 652, 973, 1240, 1358 |
| LweI | GCATC | 7 cut(s) | 367, 512, 619, 829, 970, 1158, 1546 |
| MaeI | CTAG | 4 cut(s) | 333, 995, 1091, 1323 |
| MaeII | ACGT | 2 cut(s) | 115, 686 |
| MaeIII | GTNAC | 4 cut(s) | 390, 531, 927, 1046 |
| MalI | GATC | 5 cut(s) | 942, 1064, 1095, 1116, 1241 |
| MboI | GATC | 5 cut(s) | 940, 1062, 1093, 1114, 1239 |
| MhlI | GDGCHC | 4 cut(s) | 727, 748, 1005, 1202 |
| MlsI | TGGCCA | 1 cut(s) | 479 |
| MluCI | AATT | 6 cut(s) | 9, 286, 859, 1054, 1304, 1473 |
| MluNI | TGGCCA | 1 cut(s) | 479 |
| MmeI | TCCRAC | 1 cut(s) | 294 |
| MnlI | CCTC | 9 cut(s) | 34, 119, 176, 197, 277, 550, 1138, 1243, 1540 |
| Mox20I | TGGCCA | 1 cut(s) | 479 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MscI | TGGCCA | 1 cut(s) | 479 |
| MseI | TTAA | 2 cut(s) | 834, 1383 |
| MslI | CAYNNNNRTG | 3 cut(s) | 616, 764, 1230 |
| Msp20I | TGGCCA | 1 cut(s) | 479 |
| MspI | CCGG | 3 cut(s) | 547, 1042, 1126 |
| MspR9I | CCNGG | 3 cut(s) | 548, 1127, 1395 |
| Mva1269I | GAATGC | 1 cut(s) | 544 |
| MvaI | CCWGG | 1 cut(s) | 1395 |
| MvnI | CGCG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 207, 908, 932, 1534 |
| NciI | CCSGG | 2 cut(s) | 548, 1127 |
| NcoI | CCATGG | 1 cut(s) | 430 |
| NdeI | CATATG | 1 cut(s) | 409 |
| NdeII | GATC | 5 cut(s) | 940, 1062, 1093, 1114, 1239 |
| NheI | GCTAGC | 1 cut(s) | 1322 |
| NlaIV | GGNNCC | 1 cut(s) | 1278 |
| NmuCI | GTSAC | 2 cut(s) | 390, 927 |
| NsbI | TGCGCA | 1 cut(s) | 358 |
| NspI | RCATGY | 1 cut(s) | 398 |
| OliI | CACNNNNGTG | 1 cut(s) | 616 |
| PctI | GAATGC | 1 cut(s) | 544 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 6 cut(s) | 245, 281, 329, 344, 439, 1408 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1194 |
| PkrI | GCNGC | 6 cut(s) | 203, 457, 642, 963, 1255, 1348 |
| Ppu21I | YACGTR | 1 cut(s) | 687 |
| Psp124BI | GAGCTC | 1 cut(s) | 727 |
| Psp6I | CCWGG | 1 cut(s) | 1393 |
| PspGI | CCWGG | 1 cut(s) | 1393 |
| PspN4I | GGNNCC | 1 cut(s) | 1278 |
| PstI | CTGCAG | 1 cut(s) | 1258 |
| RsaI | GTAC | 3 cut(s) | 782, 815, 1302 |
| RsaNI | GTAC | 3 cut(s) | 781, 814, 1301 |
| RseI | CAYNNNNRTG | 3 cut(s) | 616, 764, 1230 |
| SacI | GAGCTC | 1 cut(s) | 727 |
| SaqAI | TTAA | 2 cut(s) | 834, 1383 |
| SatI | GCNGC | 6 cut(s) | 202, 456, 641, 962, 1254, 1347 |
| Sau3AI | GATC | 5 cut(s) | 940, 1062, 1093, 1114, 1239 |
| ScrFI | CCNGG | 3 cut(s) | 548, 1127, 1395 |
| SduI | GDGCHC | 4 cut(s) | 727, 748, 1005, 1202 |
| SfaNI | GCATC | 7 cut(s) | 367, 512, 619, 829, 970, 1158, 1546 |
| SfcI | CTRYAG | 3 cut(s) | 236, 1216, 1254 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 616, 764, 1230 |
| SnaBI | TACGTA | 1 cut(s) | 687 |
| Sse9I | AATT | 6 cut(s) | 9, 286, 859, 1054, 1304, 1473 |
| SsiI | CCGC | 1 cut(s) | 202 |
| SspMI | CTAG | 4 cut(s) | 333, 995, 1091, 1323 |
| SstI | GAGCTC | 1 cut(s) | 727 |
| StyD4I | CCNGG | 3 cut(s) | 546, 1125, 1393 |
| StyI | CCWWGG | 2 cut(s) | 205, 430 |
| TaaI | ACNGT | 4 cut(s) | 240, 324, 452, 1451 |
| TaiI | ACGT | 2 cut(s) | 118, 689 |
| TaqI | TCGA | 3 cut(s) | 162, 555, 774 |
| TasI | AATT | 6 cut(s) | 9, 286, 859, 1054, 1304, 1473 |
| TatI | WGTACW | 3 cut(s) | 780, 813, 1300 |
| TauI | GCSGC | 1 cut(s) | 204 |
| TfiI | GAWTC | 6 cut(s) | 245, 281, 329, 344, 439, 1408 |
| Tru1I | TTAA | 2 cut(s) | 834, 1383 |
| Tru9I | TTAA | 2 cut(s) | 834, 1383 |
| TscAI | CASTG | 5 cut(s) | 196, 455, 655, 724, 1209 |
| TseFI | GTSAC | 2 cut(s) | 390, 927 |
| TseI | GCWGC | 5 cut(s) | 455, 640, 961, 1253, 1346 |
| Tsp45I | GTSAC | 2 cut(s) | 390, 927 |
| TspGWI | ACGGA | 1 cut(s) | 432 |
| TspRI | CASTG | 5 cut(s) | 196, 455, 655, 724, 1209 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1194 |
| XapI | RAATTY | 3 cut(s) | 9, 286, 859 |
| XceI | RCATGY | 1 cut(s) | 398 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| XspI | CTAG | 4 cut(s) | 333, 995, 1091, 1323 |