Prupe.6G245400_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
24260845 .. 24262623
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G245400.2

Sequence Viewer

Length: 1572 bp
ATGAATGGAATTCTCTTTCAAGCCTCTTTCAGTTTCAGGAAGAAACTTTCTCAATATATCTTACAGACACATTCATCACACTCTAAGCCCTTCTTCTCTTCTCCCAACCTCACACGTTCATCGCAGGAAACCAAGAAGCTACACAACGCTCTTAGAGTTCTCGACCTCATCACCCCAAAGCCAACCCTCACTGCGCGTCGCCGCCAAGGCCATCTTCGGCTCATTCAGGACTTTCTACAGTCAGATTCCGAACACTTCAGCAATGCCTCTGCTTTCTCTGATTCAAATTCGCCAATAAAAATCTCAACTTTGTTGGATGAACTGTTTGATTCTAGCTCTGTTGATTCTCCATCATGCGCAGAAAGGTTTCCGATTGATGCAAGCGTTTTGTCACATGCCATAAGCTCATATGGGTCTTCTCGTAATCTCCATGGTGGGATTCCGTATCACTGTGCAGCAATAAGAAGTGGGCTTGTGGCCAATGTTTATATTGGAAGCTCTTTGGTGAGCTTTTATGGTAGATGCAACGAGTTACAGAATGCCTACCGGGTTTTCGAGGAAATGCCTGTGAGAAATGTGGTGTCATGGACAGCCATTATTTCAGGGTTTGCACAAGAGTGGCAGGTTGATGCGTGCTTGCAGCTTTTCAGTGAGATGAGACATTCTTCAAAACCCAATGATTTTACGTATGCAAGTATTCTGAGTGCTTGCACAGGCAGTGGAGCTCTTGGGCATGGAAGAAGTGCTCATTGCCATACCATTCGGATGGGCTTCGATTTGTACATTCACATTGCTAATGCTCTTATCTCAATGTACTGCAAATGTGGGGATGTTAAAGATGCGCTTTGCATATTCAAAAATTTGGATGGCAAAGATAATGTATCTTGGAACTCCATGATTGCAGGGTATGCACAGCATGGCCTTGCGTCACAGGCTATTGATCTTTTTGAAGAAATGAAGCAGCAATGTGTAGAACCCGATGCCATTACTTTACTAGGCGTGCTCTCTTCGTGTCGTCATGCTGGTCTCGTTCAAGAAGGCCGGAGTTACTTCAATTCAATGATCAAAGAACATGGTATTCAGCCAGAACTAGATCATTATTCATGTGTTATTGATCTTCTTGGCCGGGCTGGTTGTTTGGAAGAGGCTCAATGTTTCATTGAAAAGATGCCTATTCGTCCCAATGCCATTATCTGGGGCTCACTGCTTTCTTCCTGTAGGGTTCATGGGAGTGTGTGGATCGGCATTGAGGCTGCAGAGAGCAGGCTATTGCTGGAGCCAGAGTGCGCTTCTACCCATGTACAATTAGCAAACCTGTATGCTAGCGTGGGATGTTGGGATGACGCAGCAAGAGTTCGGAAGTTGATGAAAGATAAAGGGATTAAAACAAGTCCTGGGTTTAGCTGGATTCAGATTAGTAATGAAGTTCACAGGTTTAGAGCAGAAGACTGTTCAAACCCCAAAATGATTGAAATTATTGCTGTCTTGGATAGTTTGGTAGAACACAATAAGACTTTACGCTATGAGCCTGAAATGCAAGAAGAAGAGGTTGATGATGCTTTATATATATAA

Protein Analysis

524

Amino Acids

58.22

Weight (kDa)

6.16

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 358
Acc36I ACCTGC 1 cut(s) 613
AccB7I CCANNNNNTGG 1 cut(s) 1194
AccII CGCG 1 cut(s) 196
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 1247
AcoI YGGCCR 2 cut(s) 477, 1123
AcsI RAATTY 3 cut(s) 9, 286, 859
AcuI CTGAAG 1 cut(s) 241
AfaI GTAC 3 cut(s) 782, 815, 1302
AfiI CCNNNNNNNGG 1 cut(s) 1194
AflIII ACRYGT 1 cut(s) 113
AjnI CCWGG 1 cut(s) 1393
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AleI CACNNNNGTG 1 cut(s) 616
AluBI AGCT 8 cut(s) 139, 336, 405, 498, 510, 643, 725, 1404
AluI AGCT 8 cut(s) 139, 336, 405, 498, 510, 643, 725, 1404
Alw21I GWGCWC 3 cut(s) 727, 748, 1005
Alw26I GTCTC 2 cut(s) 652, 1031
AlwI GGATC 1 cut(s) 1247
AoxI GGCC 5 cut(s) 208, 477, 919, 1039, 1123
ApeKI GCWGC 5 cut(s) 455, 640, 961, 1253, 1346
ApoI RAATTY 3 cut(s) 9, 286, 859
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 4 cut(s) 196, 359, 844, 1289
AsuC2I CCSGG 2 cut(s) 548, 1127
AsuHPI GGTGA 2 cut(s) 163, 517
AsuNHI GCTAGC 1 cut(s) 1322
BalI TGGCCA 1 cut(s) 479
BanII GRGCYC 2 cut(s) 727, 1202
BbsI GAAGAC 2 cut(s) 408, 1452
Bbv12I GWGCWC 3 cut(s) 727, 748, 1005
BbvI GCAGC 5 cut(s) 467, 652, 973, 1240, 1358
BccI CCATC 4 cut(s) 219, 358, 760, 860
BciT130I CCWGG 1 cut(s) 1395
BclI TGATCA 1 cut(s) 1062
BcnI CCSGG 2 cut(s) 548, 1127
BcoDI GTCTC 2 cut(s) 652, 1031
BfaI CTAG 4 cut(s) 333, 995, 1091, 1323
BfmI CTRYAG 3 cut(s) 236, 1216, 1254
BfuAI ACCTGC 1 cut(s) 613
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 6 cut(s) 202, 456, 641, 962, 1254, 1347
BlsI GCNGC 6 cut(s) 203, 457, 642, 963, 1255, 1348
Bme1390I CCNGG 3 cut(s) 548, 1127, 1395
BmiI GGNNCC 1 cut(s) 1278
BmrFI CCNGG 3 cut(s) 548, 1127, 1395
BmsI GCATC 7 cut(s) 367, 512, 619, 829, 970, 1158, 1546
BmtI GCTAGC 1 cut(s) 1326
BpiI GAAGAC 2 cut(s) 408, 1452
BpmI CTGGAG 1 cut(s) 1295
BpuMI CCSGG 2 cut(s) 548, 1127
BsaAI YACGTR 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 3 cut(s) 205, 430, 1394
BsaXI ACNNNNNCTCC 2 cut(s) 1268, 1298
Bsc4I CCNNNNNNNGG 1 cut(s) 1194
Bse3DI GCAATG 4 cut(s) 268, 748, 789, 971
BseBI CCWGG 1 cut(s) 1395
BseDI CCNNGG 3 cut(s) 205, 430, 1394
BseGI GGATG 6 cut(s) 322, 771, 835, 871, 1337, 1345
BseLI CCNNNNNNNGG 1 cut(s) 1194
BseMI GCAATG 4 cut(s) 268, 748, 789, 971
BseMII CTCAG 1 cut(s) 692
BseXI GCAGC 5 cut(s) 467, 652, 973, 1240, 1358
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 5 cut(s) 210, 479, 921, 1041, 1125
BsiHKAI GWGCWC 3 cut(s) 727, 748, 1005
BsiSI CCGG 3 cut(s) 547, 1042, 1126
BslFI GGGAC 1 cut(s) 1164
BslI CCNNNNNNNGG 1 cut(s) 1194
BsmAI GTCTC 2 cut(s) 652, 1031
BsmFI GGGAC 1 cut(s) 1164
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 5 cut(s) 210, 479, 921, 1041, 1125
Bso31I GGTCTC 1 cut(s) 1031
Bsp1286I GDGCHC 4 cut(s) 727, 748, 1005, 1202
Bsp1407I TGTACA 2 cut(s) 780, 1300
Bsp143I GATC 5 cut(s) 940, 1062, 1093, 1114, 1239
Bsp19I CCATGG 1 cut(s) 430
BspACI CCGC 1 cut(s) 202
BspANI GGCC 5 cut(s) 210, 479, 921, 1041, 1125
BspCNI CTCAG 1 cut(s) 693
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 1278
BspMAI CTGCAG 1 cut(s) 1258
BspMI ACCTGC 1 cut(s) 613
BspOI GCTAGC 1 cut(s) 1326
BspPI GGATC 1 cut(s) 1247
BspTNI GGTCTC 1 cut(s) 1031
BsrDI GCAATG 4 cut(s) 268, 748, 789, 971
BsrGI TGTACA 2 cut(s) 780, 1300
BssECI CCNNGG 3 cut(s) 205, 430, 1394
BssMI GATC 5 cut(s) 940, 1062, 1093, 1114, 1239
BssT1I CCWWGG 2 cut(s) 205, 430
Bst2UI CCWGG 1 cut(s) 1395
Bst4CI ACNGT 4 cut(s) 240, 324, 452, 1451
Bst6I CTCTTC 4 cut(s) 103, 1012, 1137, 1539
BstAPI GCANNNNNTGC 1 cut(s) 908
BstAUI TGTACA 2 cut(s) 780, 1300
BstBAI YACGTR 1 cut(s) 687
BstC8I GCNNGC 7 cut(s) 382, 634, 638, 709, 1001, 1265, 1324
BstDEI CTNAG 3 cut(s) 84, 152, 701
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 6 cut(s) 322, 771, 835, 871, 1337, 1345
BstFNI CGCG 1 cut(s) 196
BstHHI GCGC 4 cut(s) 196, 359, 844, 1289
BstKTI GATC 5 cut(s) 943, 1065, 1096, 1117, 1242
BstMAI GTCTC 2 cut(s) 652, 1031
BstMBI GATC 5 cut(s) 940, 1062, 1093, 1114, 1239
BstMWI GCNNNNNNNGC 4 cut(s) 207, 908, 932, 1534
BstNI CCWGG 1 cut(s) 1395
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 3 cut(s) 546, 1125, 1393
BstSFI CTRYAG 3 cut(s) 236, 1216, 1254
BstSNI TACGTA 1 cut(s) 687
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 5 cut(s) 467, 652, 973, 1240, 1358
BstV2I GAAGAC 2 cut(s) 408, 1452
BstXI CCANNNNNNTGG 1 cut(s) 766
BsuRI GGCC 5 cut(s) 210, 479, 921, 1041, 1125
BtgI CCRYGG 1 cut(s) 430
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 6 cut(s) 322, 771, 835, 871, 1337, 1345
BtsI GCAGTG 3 cut(s) 189, 724, 1202
BtsIMutI CAGTG 5 cut(s) 189, 448, 655, 724, 1202
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 7 cut(s) 382, 634, 638, 709, 1001, 1265, 1324
CfoI GCGC 4 cut(s) 196, 359, 844, 1289
CseI GACGC 3 cut(s) 185, 915, 1352
Csp6I GTAC 3 cut(s) 781, 814, 1301
CviQI GTAC 3 cut(s) 781, 814, 1301
DdeI CTNAG 3 cut(s) 84, 152, 701
DpnI GATC 5 cut(s) 942, 1064, 1095, 1116, 1241
DpnII GATC 5 cut(s) 940, 1062, 1093, 1114, 1239
EaeI YGGCCR 2 cut(s) 477, 1123
Eam1104I CTCTTC 4 cut(s) 103, 1012, 1137, 1539
EarI CTCTTC 4 cut(s) 103, 1012, 1137, 1539
Ecl136II GAGCTC 1 cut(s) 725
Eco105I TACGTA 1 cut(s) 687
Eco130I CCWWGG 2 cut(s) 205, 430
Eco24I GRGCYC 2 cut(s) 727, 1202
Eco31I GGTCTC 1 cut(s) 1031
Eco53kI GAGCTC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 725
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 1393
EcoT14I CCWWGG 2 cut(s) 205, 430
EcoT38I GRGCYC 2 cut(s) 727, 1202
ErhI CCWWGG 2 cut(s) 205, 430
FalI AAGNNNNNCTT 6 cut(s) 77, 109, 198, 230, 828, 860
FaqI GGGAC 1 cut(s) 1164
FauNDI CATATG 1 cut(s) 409
FbaI TGATCA 1 cut(s) 1062
Fnu4HI GCNGC 6 cut(s) 202, 456, 641, 962, 1254, 1347
FokI GGATG 6 cut(s) 329, 778, 842, 878, 1344, 1352
FriOI GRGCYC 2 cut(s) 727, 1202
Fsp4HI GCNGC 6 cut(s) 202, 456, 641, 962, 1254, 1347
FspBI CTAG 4 cut(s) 333, 995, 1091, 1323
FspI TGCGCA 1 cut(s) 358
GlaI GCGC 4 cut(s) 195, 358, 843, 1288
GluI GCNGC 6 cut(s) 202, 456, 641, 962, 1254, 1347
GsuI CTGGAG 1 cut(s) 1295
HaeIII GGCC 5 cut(s) 210, 479, 921, 1041, 1125
HapII CCGG 3 cut(s) 547, 1042, 1126
HgaI GACGC 3 cut(s) 185, 915, 1352
HhaI GCGC 4 cut(s) 196, 359, 844, 1289
Hin6I GCGC 4 cut(s) 194, 357, 842, 1287
HinP1I GCGC 4 cut(s) 194, 357, 842, 1287
HinfI GANTC 6 cut(s) 245, 281, 329, 344, 439, 1408
HpaII CCGG 3 cut(s) 547, 1042, 1126
HphI GGTGA 2 cut(s) 163, 517
Hpy166II GTNNAC 1 cut(s) 1429
Hpy188I TCNGA 8 cut(s) 244, 250, 280, 372, 702, 765, 1359, 1413
Hpy188III TCNNGA 4 cut(s) 37, 161, 227, 1034
Hpy8I GTNNAC 1 cut(s) 1429
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 100, 1031
HpyCH4III ACNGT 4 cut(s) 240, 324, 452, 1451
HpyCH4IV ACGT 2 cut(s) 115, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 908, 932, 1534
HpyF3I CTNAG 3 cut(s) 84, 152, 701
HpySE526I ACGT 2 cut(s) 115, 686
HspAI GCGC 4 cut(s) 194, 357, 842, 1287
Ksp22I TGATCA 1 cut(s) 1062
Kzo9I GATC 5 cut(s) 940, 1062, 1093, 1114, 1239
LmnI GCTCC 2 cut(s) 722, 1276
Lsp1109I GCAGC 5 cut(s) 467, 652, 973, 1240, 1358
LweI GCATC 7 cut(s) 367, 512, 619, 829, 970, 1158, 1546
MaeI CTAG 4 cut(s) 333, 995, 1091, 1323
MaeII ACGT 2 cut(s) 115, 686
MaeIII GTNAC 4 cut(s) 390, 531, 927, 1046
MalI GATC 5 cut(s) 942, 1064, 1095, 1116, 1241
MboI GATC 5 cut(s) 940, 1062, 1093, 1114, 1239
MhlI GDGCHC 4 cut(s) 727, 748, 1005, 1202
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 6 cut(s) 9, 286, 859, 1054, 1304, 1473
MluNI TGGCCA 1 cut(s) 479
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 9 cut(s) 34, 119, 176, 197, 277, 550, 1138, 1243, 1540
Mox20I TGGCCA 1 cut(s) 479
MroXI GAANNNNTTC 1 cut(s) 366
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 834, 1383
MslI CAYNNNNRTG 3 cut(s) 616, 764, 1230
Msp20I TGGCCA 1 cut(s) 479
MspI CCGG 3 cut(s) 547, 1042, 1126
MspR9I CCNGG 3 cut(s) 548, 1127, 1395
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 1395
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 4 cut(s) 207, 908, 932, 1534
NciI CCSGG 2 cut(s) 548, 1127
NcoI CCATGG 1 cut(s) 430
NdeI CATATG 1 cut(s) 409
NdeII GATC 5 cut(s) 940, 1062, 1093, 1114, 1239
NheI GCTAGC 1 cut(s) 1322
NlaIV GGNNCC 1 cut(s) 1278
NmuCI GTSAC 2 cut(s) 390, 927
NsbI TGCGCA 1 cut(s) 358
NspI RCATGY 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 616
PctI GAATGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 6 cut(s) 245, 281, 329, 344, 439, 1408
PflMI CCANNNNNTGG 1 cut(s) 1194
PkrI GCNGC 6 cut(s) 203, 457, 642, 963, 1255, 1348
Ppu21I YACGTR 1 cut(s) 687
Psp124BI GAGCTC 1 cut(s) 727
Psp6I CCWGG 1 cut(s) 1393
PspGI CCWGG 1 cut(s) 1393
PspN4I GGNNCC 1 cut(s) 1278
PstI CTGCAG 1 cut(s) 1258
RsaI GTAC 3 cut(s) 782, 815, 1302
RsaNI GTAC 3 cut(s) 781, 814, 1301
RseI CAYNNNNRTG 3 cut(s) 616, 764, 1230
SacI GAGCTC 1 cut(s) 727
SaqAI TTAA 2 cut(s) 834, 1383
SatI GCNGC 6 cut(s) 202, 456, 641, 962, 1254, 1347
Sau3AI GATC 5 cut(s) 940, 1062, 1093, 1114, 1239
ScrFI CCNGG 3 cut(s) 548, 1127, 1395
SduI GDGCHC 4 cut(s) 727, 748, 1005, 1202
SfaNI GCATC 7 cut(s) 367, 512, 619, 829, 970, 1158, 1546
SfcI CTRYAG 3 cut(s) 236, 1216, 1254
SmiMI CAYNNNNRTG 3 cut(s) 616, 764, 1230
SnaBI TACGTA 1 cut(s) 687
Sse9I AATT 6 cut(s) 9, 286, 859, 1054, 1304, 1473
SsiI CCGC 1 cut(s) 202
SspMI CTAG 4 cut(s) 333, 995, 1091, 1323
SstI GAGCTC 1 cut(s) 727
StyD4I CCNGG 3 cut(s) 546, 1125, 1393
StyI CCWWGG 2 cut(s) 205, 430
TaaI ACNGT 4 cut(s) 240, 324, 452, 1451
TaiI ACGT 2 cut(s) 118, 689
TaqI TCGA 3 cut(s) 162, 555, 774
TasI AATT 6 cut(s) 9, 286, 859, 1054, 1304, 1473
TatI WGTACW 3 cut(s) 780, 813, 1300
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 6 cut(s) 245, 281, 329, 344, 439, 1408
Tru1I TTAA 2 cut(s) 834, 1383
Tru9I TTAA 2 cut(s) 834, 1383
TscAI CASTG 5 cut(s) 196, 455, 655, 724, 1209
TseFI GTSAC 2 cut(s) 390, 927
TseI GCWGC 5 cut(s) 455, 640, 961, 1253, 1346
Tsp45I GTSAC 2 cut(s) 390, 927
TspGWI ACGGA 1 cut(s) 432
TspRI CASTG 5 cut(s) 196, 455, 655, 724, 1209
Van91I CCANNNNNTGG 1 cut(s) 1194
XapI RAATTY 3 cut(s) 9, 286, 859
XceI RCATGY 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 4 cut(s) 333, 995, 1091, 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.