Prupe.6G245300_v2.0.a1

protease binding

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
24257380 .. 24260759
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G245300.1

Sequence Viewer

Length: 1722 bp
ATGGAAACTGGAAGTCACGGTTCAATGAGGAAAGTGAAAAATGGAGGACCCAAAGTCCTGTGGGCAGAGCAGTTGAGAAGTATGAAAAATGGGTTCAAAAGAGACCATCATCATCCATCTTGGCAAATGGCTATTCAGAGTCATATAGATGCCGCACATGCTTTGGTACAGTTGGCTAATGAAGATCCTAGTCTGCTTCATGGTGGGTTACGTTCACATGGAATGAAGCATAGTGTGAAAGGGATTCCAAGCATAAAGGATTCGATGGGGATGTCAAGGGGTGATAGTCATTCGGATGTGGCTGGGAGAAAGGTTAATTGTTTGGTAAAGCGTCAGCAAGCTGACTTTGGAGGTTCTATGAAGGATGATGATGCTGCTGCAGTCTTAGATTTTCATTTGCCAGCAGTGCCATATCCTGCAGGGAGAAAGCAGAAAAAGATGAAAATGTTTAAGAAACTATCTTCGCTCGTACCAAAATATATGAAAAGTAATGTCAGTGAGAAGGATGATAATGTGAATGAACCATGTCAGTTGTTGGATAGTTGTGGTCATGATAGACTACGCATGTTAATGGCAAAGAAACGGAAAAGGGTGGCAGGATCCTATTCAAAAAGAGAAACTGTGGAAGTTGCAGCACCAGTAAATTTACCCTTGAAAAGGCAGGGATTCAAATTGCCCGTTCCTACTGTTCATACCGGAATTTCATTCTCCATTGTGCATCTCCTTACTGCCATTCGAAGAGCAATGGTTGTTCCACATGCAGAAGATGATGATGTGGTGTATGGAAATGATCAAGGGGTTAGCAATGCTGAAGGGACAATTCGATTTTATTCTCTCAAAGATAAAGGCATTAGCGATTCTGTACTAACAAATTCCAAAAGTTTACCTTCTCTCACTCTTAACAAGATTGTTGAGCATGTTAGATCAACTCCAATGGATCCTTCTATTCTTCAAACCCAAGAGCACCTTCAAGATTTACTCAGAGGGGTTTTGGAGATATTTTCATCCAAAACAGCGCCTTTAGGAGCTAGAGGATGGAAGCCACTCACTTTCTATTGCAAGTCCAGTAAATGTTGGAAATGGATTGGTCCCATCAATGTTAACTCATGCAATGCTGATGAGGAATATGTATCTTCTAAAGCTTGGAGTCTTCGCCATAATGTGCTTGTGAAGTTGGTTGATTCCTTTGCTATTTGGTACAAGAGTTTTCAAGAGAGATTTCGTCAAGTTGGAAGCCTTCCTGCACCACCTTTGATTTTGATGCAACCAACACTAGATGAAAGCGAATGGTTCAGGGACATAATGTCTCGAAAGAATGCTATCAGTCCGAACTCTGAAGAAGTAAGAGCGTACTTTCAAAGGGAGGAAGCTTTGAGGTATTTAGTCCCAGATATGGCATTTTCTTACACAGCACTGGATGGTCGAAAGTCTGCAGTTGCTCCTCTAACTAGTTGCAGTGGTAAGCCATCATATAGAAACCAAGATCATTTTATGCTTAAAGCTGATCGACCACCTCATATCACCAATCTCTGTCTTGTGAGAGATGCAGCTTCTAGATTGCCTGGAAGTATTGGTACCAGGGAAGATGTTTCTACTCTCGTTCGGCACTCACAGTATATAGTGGAAGATGTCTCTGATGAACAATTTACCCGAGTTATTAGCTCTGCTCTGTCTCAGCTGCAATTTGAATTTGATCCATGCGTAGAATTTGACAGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

574

Amino Acids

64.29

Weight (kDa)

9.29

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1574
AccB1I GGYRCC 1 cut(s) 1574
AciI CCGC 1 cut(s) 153
AclWI GGATC 6 cut(s) 179, 594, 607, 932, 945, 1688
AcsI RAATTY 5 cut(s) 643, 699, 871, 1688, 1706
AcuI CTGAAG 2 cut(s) 831, 1356
AfaI GTAC 6 cut(s) 168, 471, 864, 1199, 1352, 1576
AfiI CCNNNNNNNGG 2 cut(s) 657, 1393
AhdI GACNNNNNGTC 2 cut(s) 53, 1303
AhlI ACTAGT 1 cut(s) 1448
AjnI CCWGG 2 cut(s) 1561, 1577
AjuI GAANNNNNNNTTGG 4 cut(s) 925, 951, 957, 983
AluBI AGCT 8 cut(s) 341, 1028, 1142, 1370, 1502, 1550, 1662, 1678
AluI AGCT 8 cut(s) 341, 1028, 1142, 1370, 1502, 1550, 1662, 1678
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 4 cut(s) 96, 1311, 1636, 1677
AlwI GGATC 6 cut(s) 179, 594, 607, 932, 945, 1688
AlwNI CAGNNNCTG 1 cut(s) 1719
Ama87I CYCGRG 1 cut(s) 1650
ApeKI GCWGC 5 cut(s) 374, 377, 632, 1547, 1678
ApoI RAATTY 5 cut(s) 643, 699, 871, 1688, 1706
Asp718I GGTACC 1 cut(s) 1574
AspLEI GCGC 1 cut(s) 1018
AspS9I GGNCC 2 cut(s) 47, 1088
AsuHPI GGTGA 2 cut(s) 293, 1513
AsuII TTCGAA 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 1650
AvaII GGWCC 2 cut(s) 47, 1088
BaeI ACNNNNGTAYC 2 cut(s) 1189, 1222
BamHI GGATCC 2 cut(s) 599, 937
BanI GGYRCC 1 cut(s) 1574
BarI GAAGNNNNNNTAC 2 cut(s) 1558, 1590
BbsI GAAGAC 1 cut(s) 1142
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 5 cut(s) 361, 364, 644, 1559, 1665
BccI CCATC 7 cut(s) 114, 124, 259, 1029, 1100, 1412, 1474
BciT130I CCWGG 2 cut(s) 1563, 1579
BclI TGATCA 1 cut(s) 790
BcoDI GTCTC 4 cut(s) 96, 1311, 1636, 1677
BcuI ACTAGT 1 cut(s) 1448
BfaI CTAG 5 cut(s) 189, 1029, 1274, 1449, 1554
BfmI CTRYAG 3 cut(s) 378, 417, 1431
BfoI RGCGCY 1 cut(s) 1019
BisI GCNGC 6 cut(s) 153, 375, 378, 633, 1548, 1679
BlsI GCNGC 6 cut(s) 154, 376, 379, 634, 1549, 1680
Bme1390I CCNGG 2 cut(s) 1563, 1579
Bme18I GGWCC 2 cut(s) 47, 1088
BmeRI GACNNNNNGTC 2 cut(s) 53, 1303
BmeT110I CYCGRG 1 cut(s) 1650
BmgT120I GGNCC 2 cut(s) 47, 1088
BmiI GGNNCC 5 cut(s) 49, 601, 939, 1090, 1576
BmrFI CCNGG 2 cut(s) 1563, 1579
BmsI GCATC 5 cut(s) 139, 361, 727, 1251, 1534
BpiI GAAGAC 1 cut(s) 1142
Bpu14I TTCGAA 1 cut(s) 736
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 1578
BsaWI WCCGGW 1 cut(s) 695
Bsc4I CCNNNNNNNGG 2 cut(s) 657, 1393
Bse1I ACTGG 4 cut(s) 13, 638, 1065, 1419
Bse3DI GCAATG 3 cut(s) 750, 811, 1117
BseBI CCWGG 2 cut(s) 1563, 1579
BseDI CCNNGG 1 cut(s) 1578
BseGI GGATG 8 cut(s) 112, 276, 301, 370, 511, 1004, 1040, 1423
BseLI CCNNNNNNNGG 2 cut(s) 657, 1393
BseMI GCAATG 3 cut(s) 750, 811, 1117
BseMII CTCAG 2 cut(s) 994, 1688
BseNI ACTGG 4 cut(s) 13, 638, 1065, 1419
BseRI GAGGAG 1 cut(s) 1431
BseXI GCAGC 5 cut(s) 361, 364, 644, 1559, 1665
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 1227
BshNI GGYRCC 1 cut(s) 1574
BsiHKAI GWGCWC 1 cut(s) 966
BsiHKCI CYCGRG 1 cut(s) 1650
BsiSI CCGG 1 cut(s) 696
BslFI GGGAC 4 cut(s) 829, 1074, 1310, 1370
BslI CCNNNNNNNGG 2 cut(s) 657, 1393
BsmAI GTCTC 4 cut(s) 96, 1311, 1636, 1677
BsmFI GGGAC 4 cut(s) 829, 1074, 1310, 1370
BsmI GAATGC 1 cut(s) 1321
Bso31I GGTCTC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 1650
Bsp119I TTCGAA 1 cut(s) 736
Bsp1286I GDGCHC 1 cut(s) 966
Bsp143I GATC 8 cut(s) 184, 599, 790, 923, 937, 1483, 1504, 1693
BspACI CCGC 1 cut(s) 153
BspCNI CTCAG 2 cut(s) 993, 1687
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 5 cut(s) 49, 601, 939, 1090, 1576
BspMAI CTGCAG 3 cut(s) 382, 421, 1435
BspPI GGATC 6 cut(s) 179, 594, 607, 932, 945, 1688
BspQI GCTCTTC 1 cut(s) 733
BspT104I TTCGAA 1 cut(s) 736
BspT107I GGYRCC 1 cut(s) 1574
BspTNI GGTCTC 1 cut(s) 96
BsrDI GCAATG 3 cut(s) 750, 811, 1117
BsrI ACTGG 4 cut(s) 13, 638, 1065, 1419
BssECI CCNNGG 1 cut(s) 1578
BssMI GATC 8 cut(s) 184, 599, 790, 923, 937, 1483, 1504, 1693
Bst2UI CCWGG 2 cut(s) 1563, 1579
Bst4CI ACNGT 5 cut(s) 20, 171, 622, 688, 1614
Bst6I CTCTTC 1 cut(s) 733
BstBI TTCGAA 1 cut(s) 736
BstC8I GCNNGC 2 cut(s) 339, 402
BstDEI CTNAG 3 cut(s) 385, 980, 1674
BstENI CCTNNNNNAGG 1 cut(s) 655
BstF5I GGATG 8 cut(s) 112, 276, 301, 370, 511, 1004, 1040, 1423
BstH2I RGCGCY 1 cut(s) 1019
BstHHI GCGC 1 cut(s) 1018
BstKTI GATC 8 cut(s) 187, 602, 793, 926, 940, 1486, 1507, 1696
BstMAI GTCTC 4 cut(s) 96, 1311, 1636, 1677
BstMBI GATC 8 cut(s) 184, 599, 790, 923, 937, 1483, 1504, 1693
BstMWI GCNNNNNNNGC 2 cut(s) 158, 406
BstNI CCWGG 2 cut(s) 1563, 1579
BstNSI RCATGY 4 cut(s) 161, 568, 761, 920
BstSCI CCNGG 2 cut(s) 1561, 1577
BstSFI CTRYAG 3 cut(s) 378, 417, 1431
BstV1I GCAGC 5 cut(s) 361, 364, 644, 1559, 1665
BstV2I GAAGAC 1 cut(s) 1142
BstX2I RGATCY 3 cut(s) 184, 599, 937
BstYI RGATCY 3 cut(s) 184, 599, 937
BtsCI GGATG 8 cut(s) 112, 276, 301, 370, 511, 1004, 1040, 1423
BtsI GCAGTG 2 cut(s) 411, 1462
BtsIMutI CAGTG 5 cut(s) 411, 502, 1412, 1462, 1717
Cac8I GCNNGC 2 cut(s) 339, 402
CaiI CAGNNNCTG 1 cut(s) 1719
CciI TCATGA 1 cut(s) 550
CfoI GCGC 1 cut(s) 1018
Cfr13I GGNCC 2 cut(s) 47, 1088
CseI GACGC 1 cut(s) 320
Csp6I GTAC 6 cut(s) 167, 470, 863, 1198, 1351, 1575
CviQI GTAC 6 cut(s) 167, 470, 863, 1198, 1351, 1575
DdeI CTNAG 3 cut(s) 385, 980, 1674
DpnI GATC 8 cut(s) 186, 601, 792, 925, 939, 1485, 1506, 1695
DpnII GATC 8 cut(s) 184, 599, 790, 923, 937, 1483, 1504, 1693
DriI GACNNNNNGTC 2 cut(s) 53, 1303
Eam1104I CTCTTC 1 cut(s) 733
Eam1105I GACNNNNNGTC 2 cut(s) 53, 1303
EarI CTCTTC 1 cut(s) 733
Eco31I GGTCTC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 47, 1088
Eco57I CTGAAG 2 cut(s) 831, 1356
Eco88I CYCGRG 1 cut(s) 1650
EcoNI CCTNNNNNAGG 1 cut(s) 655
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 1561, 1577
FalI AAGNNNNNCTT 4 cut(s) 871, 903, 951, 983
FaqI GGGAC 4 cut(s) 829, 1074, 1310, 1370
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 6 cut(s) 153, 375, 378, 633, 1548, 1679
FokI GGATG 8 cut(s) 99, 283, 308, 377, 518, 991, 1047, 1430
Fsp4HI GCNGC 6 cut(s) 153, 375, 378, 633, 1548, 1679
FspBI CTAG 5 cut(s) 189, 1029, 1274, 1449, 1554
GlaI GCGC 1 cut(s) 1017
GluI GCNGC 6 cut(s) 153, 375, 378, 633, 1548, 1679
GsaI CCCAGC 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 1019
HapII CCGG 1 cut(s) 696
HgaI GACGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 1018
Hin6I GCGC 1 cut(s) 1016
HinP1I GCGC 1 cut(s) 1016
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 2 cut(s) 1140, 1368
HinfI GANTC 7 cut(s) 139, 244, 260, 666, 857, 1147, 1181
HpaI GTTAAC 1 cut(s) 1102
HpaII CCGG 1 cut(s) 696
HphI GGTGA 2 cut(s) 293, 1513
Hpy166II GTNNAC 3 cut(s) 215, 884, 1102
Hpy188I TCNGA 6 cut(s) 138, 295, 983, 1329, 1336, 1636
Hpy188III TCNNGA 5 cut(s) 551, 971, 1211, 1308, 1554
Hpy8I GTNNAC 3 cut(s) 215, 884, 1102
HpyAV CCTTC 7 cut(s) 355, 496, 806, 897, 951, 977, 1247
HpyCH4III ACNGT 5 cut(s) 20, 171, 622, 688, 1614
HpyCH4IV ACGT 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 406
HpyF3I CTNAG 3 cut(s) 385, 980, 1674
HpySE526I ACGT 1 cut(s) 211
HspAI GCGC 1 cut(s) 1016
KpnI GGTACC 1 cut(s) 1578
Ksp22I TGATCA 1 cut(s) 790
KspAI GTTAAC 1 cut(s) 1102
Kzo9I GATC 8 cut(s) 184, 599, 790, 923, 937, 1483, 1504, 1693
LguI GCTCTTC 1 cut(s) 733
LmnI GCTCC 2 cut(s) 1025, 1444
Lsp1109I GCAGC 5 cut(s) 361, 364, 644, 1559, 1665
LweI GCATC 5 cut(s) 139, 361, 727, 1251, 1534
MaeI CTAG 5 cut(s) 189, 1029, 1274, 1449, 1554
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 14, 207
MalI GATC 8 cut(s) 186, 601, 792, 925, 939, 1485, 1506, 1695
MboI GATC 8 cut(s) 184, 599, 790, 923, 937, 1483, 1504, 1693
MflI RGATCY 3 cut(s) 184, 599, 937
MhlI GDGCHC 1 cut(s) 966
MlyI GAGTC 2 cut(s) 148, 1156
MmeI TCCRAC 3 cut(s) 516, 1055, 1210
MseI TTAA 6 cut(s) 315, 450, 569, 900, 1101, 1497
MslI CAYNNNNRTG 3 cut(s) 147, 294, 569
MspA1I CMGCKG 1 cut(s) 1678
MspI CCGG 1 cut(s) 696
MspR9I CCNGG 2 cut(s) 1563, 1579
Mva1269I GAATGC 1 cut(s) 1321
MvaI CCWGG 2 cut(s) 1563, 1579
MwoI GCNNNNNNNGC 2 cut(s) 158, 406
NdeII GATC 8 cut(s) 184, 599, 790, 923, 937, 1483, 1504, 1693
NlaIV GGNNCC 5 cut(s) 49, 601, 939, 1090, 1576
NmuCI GTSAC 1 cut(s) 14
NspI RCATGY 4 cut(s) 161, 568, 761, 920
NspV TTCGAA 1 cut(s) 736
PagI TCATGA 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 733
PctI GAATGC 1 cut(s) 1321
PfeI GAWTC 5 cut(s) 244, 260, 666, 857, 1181
PkrI GCNGC 6 cut(s) 154, 376, 379, 634, 1549, 1680
PleI GAGTC 2 cut(s) 147, 1155
PpsI GAGTC 2 cut(s) 147, 1155
PpuMI RGGWCCY 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 1561, 1577
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 1561, 1577
PspN4I GGNNCC 5 cut(s) 49, 601, 939, 1090, 1576
PspPI GGNCC 2 cut(s) 47, 1088
PspPPI RGGWCCY 1 cut(s) 47
PstI CTGCAG 3 cut(s) 382, 421, 1435
PstNI CAGNNNCTG 1 cut(s) 1719
PsuI RGATCY 3 cut(s) 184, 599, 937
PvuII CAGCTG 1 cut(s) 1678
RsaI GTAC 6 cut(s) 168, 471, 864, 1199, 1352, 1576
RsaNI GTAC 6 cut(s) 167, 470, 863, 1198, 1351, 1575
RseI CAYNNNNRTG 3 cut(s) 147, 294, 569
SapI GCTCTTC 1 cut(s) 733
SaqAI TTAA 6 cut(s) 315, 450, 569, 900, 1101, 1497
SatI GCNGC 6 cut(s) 153, 375, 378, 633, 1548, 1679
Sau3AI GATC 8 cut(s) 184, 599, 790, 923, 937, 1483, 1504, 1693
Sau96I GGNCC 2 cut(s) 47, 1088
SbfI CCTGCAGG 1 cut(s) 421
SchI GAGTC 2 cut(s) 148, 1156
ScrFI CCNGG 2 cut(s) 1563, 1579
SdaI CCTGCAGG 1 cut(s) 421
SduI GDGCHC 1 cut(s) 966
SfaNI GCATC 5 cut(s) 139, 361, 727, 1251, 1534
SfcI CTRYAG 3 cut(s) 378, 417, 1431
SfuI TTCGAA 1 cut(s) 736
SinI GGWCC 2 cut(s) 47, 1088
SmiMI CAYNNNNRTG 3 cut(s) 147, 294, 569
SpeI ACTAGT 1 cut(s) 1448
Sse8387I CCTGCAGG 1 cut(s) 421
SsiI CCGC 1 cut(s) 153
SspMI CTAG 5 cut(s) 189, 1029, 1274, 1449, 1554
StyD4I CCNGG 2 cut(s) 1561, 1577
TaaI ACNGT 5 cut(s) 20, 171, 622, 688, 1614
TaiI ACGT 1 cut(s) 214
TaqI TCGA 6 cut(s) 263, 736, 823, 1309, 1423, 1507
TatI WGTACW 1 cut(s) 862
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 5 cut(s) 244, 260, 666, 857, 1181
Tru1I TTAA 6 cut(s) 315, 450, 569, 900, 1101, 1497
Tru9I TTAA 6 cut(s) 315, 450, 569, 900, 1101, 1497
TscAI CASTG 4 cut(s) 411, 502, 1419, 1462
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 5 cut(s) 374, 377, 632, 1547, 1678
Tsp45I GTSAC 1 cut(s) 14
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 4 cut(s) 411, 502, 1419, 1462
VpaK11BI GGWCC 2 cut(s) 47, 1088
XagI CCTNNNNNAGG 1 cut(s) 655
XapI RAATTY 5 cut(s) 643, 699, 871, 1688, 1706
XbaI TCTAGA 1 cut(s) 1553
XceI RCATGY 4 cut(s) 161, 568, 761, 920
XspI CTAG 5 cut(s) 189, 1029, 1274, 1449, 1554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.