Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Forward (+)

16101926 .. 16102998

Gene Structure 1073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGAAAATCGATTCCCGTCAAAACAGGGCTAAGAGGAGCTTCCGCAGCAGTAGCTGGATTCATCAAATCCTCAAAACCGATCCGACCCATTTCCTCCATGGACAGTTCCGACAAAGATTCATCATCCACCACCACCACCAGCGAAACTACACGACGTTTCGTTCCGCTTTCATCGGTGGTTTCTGATTGTGCGAAGCGGTGGTTTAAAGACACTCTTGAGGAAGCTAAAGCTGGGAACATCACTATGCAGGTTTTGTTAGGTCAGATGTATTACTCTGGGTATGGAGTCCCTAAGGATGCTAGAAAGGGGAGACTTTGGATTACGAAAGCATCAAGAGTTCGTTCTTCAGTGTGGAAAGTGATAGATAAACGACCAGGTTACAACGCAAGTGATTCAGATTCAGAGTCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.02

Weight (kDa)

9.85

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AciI	CCGC	3 cut(s)	45, 167, 199
AclWI	GGATC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	333
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	4 cut(s)	41, 56, 227, 233
AluI	AGCT	4 cut(s)	41, 56, 227, 233
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	2 cut(s)	56, 410
ApeKI	GCWGC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	289, 341
BpuEI	CTTGAG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	99
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	378
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	125, 304
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	59
BseYI	CCCAGC	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	45, 167, 199
BspDI	ATCGAT	1 cut(s)	11
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	32, 294
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	125, 304
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 53
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	59
Bsu15I	ATCGAT	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	125, 304
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	241
CaiI	CAGNNNCTG	2 cut(s)	56, 410
ClaI	ATCGAT	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	376
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	5 cut(s)	31, 41, 56, 227, 233
CviKI_1	RGCY	5 cut(s)	31, 41, 56, 227, 233
DdeI	CTNAG	2 cut(s)	32, 294
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DraI	TTTAAA	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	333
Eco81I	CCTNAGG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	103
FaiI	YATR	3 cut(s)	101, 248, 285
FalI	AAGNNNNNCTT	4 cut(s)	25, 57, 201, 233
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	2 cut(s)	112, 311
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	7 cut(s)	13, 60, 119, 288, 395, 401, 407
Hpy188I	TCNGA	7 cut(s)	86, 112, 187, 267, 400, 406, 412
Hpy188III	TCNNGA	2 cut(s)	218, 336
Hpy99I	CGWCG	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 53
HpyF3I	CTNAG	2 cut(s)	32, 294
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	8 cut(s)	12, 42, 154, 219, 236, 264, 363, 390
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	2 cut(s)	289, 341
MabI	ACCWGGT	1 cut(s)	376
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	339
MlyI	GAGTC	2 cut(s)	297, 416
MmeI	TCCRAC	2 cut(s)	109, 135
MnlI	CCTC	4 cut(s)	29, 82, 106, 214
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	47, 53
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	103
PfeI	GAWTC	5 cut(s)	13, 60, 119, 395, 401
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	296, 415
PpsI	GAGTC	2 cut(s)	296, 415
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	376
PstNI	CAGNNNCTG	2 cut(s)	56, 410
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	81
SchI	GAGTC	2 cut(s)	297, 416
ScrFI	CCNGG	1 cut(s)	378
SetI	ASST	8 cut(s)	43, 58, 160, 229, 235, 255, 265, 382
SexAI	ACCWGGT	1 cut(s)	376
SfaNI	GCATC	2 cut(s)	289, 341
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SsiI	CCGC	3 cut(s)	45, 167, 199
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	5 cut(s)	13, 60, 119, 395, 401
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	52, 111, 162
TspRI	CASTG	1 cut(s)	357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.