Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000090.1

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

2427 .. 3481

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000090.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ctggaaagtggctttcccaggctgtaccagctatccaaaacgacgtcgtcgcagagcgtcggagctccgagggaagcagagctcactgcaggaattattgggcacaaatcgaagcggttgaagttggagggagagatggagacttcgagcagctcacagagggagaagagccgcgcgccgctgaaggaggttgtgtcggaatgcgtgaagcggtggttcaaggatactctgaaagaggccaaagccggcgatattaatatgcaggtgttggtggggcagatgtactacagcggctatggtgttcccagagatgcccatttggggagagtatggatcacaagagcatctaggacgcggtcttcagcttggaaagtgtgtgaaaagccaccaggttataatgcaagtgattcagattcagatgaattgaagggtgagtcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.2

Weight (kDa)

9.25

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AarI	CACCTGC	1 cut(s)	253
AatII	GACGTC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	253
AccII	CGCG	3 cut(s)	174, 176, 355
AciI	CCGC	6 cut(s)	115, 172, 179, 211, 291, 355
AclWI	GGATC	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	203, 345
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	2 cut(s)	26, 284
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	121, 220, 427
AjnI	CCWGG	2 cut(s)	17, 388
AluBI	AGCT	5 cut(s)	31, 65, 82, 153, 365
AluI	AGCT	5 cut(s)	31, 65, 82, 153, 365
Alw21I	GWGCWC	2 cut(s)	67, 84
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	150
AseI	ATTAAT	1 cut(s)	255
AspLEI	GCGC	2 cut(s)	176, 178
BaeGI	GKGCMC	1 cut(s)	105
BanII	GRGCYC	2 cut(s)	67, 84
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	2 cut(s)	67, 84
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	19, 390
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	2 cut(s)	87, 286
BfuAI	ACCTGC	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	151, 172, 179, 292
BlsI	GCNGC	4 cut(s)	152, 173, 180, 293
Bme1390I	CCNGG	2 cut(s)	19, 390
BmrFI	CCNGG	2 cut(s)	19, 390
BmsI	GCATC	2 cut(s)	301, 353
BpiI	GAAGAC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	17, 68
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse118I	RCCGGY	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	19, 390
BseDI	CCNNGG	2 cut(s)	17, 68
BseLI	CCNNNNNNNGG	1 cut(s)	321
BsePI	GCGCGC	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	3 cut(s)	174, 176, 355
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	2 cut(s)	67, 84
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	3 cut(s)	67, 84, 105
Bsp143I	GATC	1 cut(s)	333
BspACI	CCGC	6 cut(s)	115, 172, 179, 211, 291, 355
BspANI	GGCC	1 cut(s)	239
BspFNI	CGCG	3 cut(s)	174, 176, 355
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	17, 68
BssHII	GCGCGC	1 cut(s)	174
BssMI	GATC	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	44
Bst2UI	CCWGG	2 cut(s)	19, 390
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	176, 247
BstFNI	CGCG	3 cut(s)	174, 176, 355
BstHHI	GCGC	2 cut(s)	176, 178
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	2 cut(s)	19, 390
BstSCI	CCNGG	2 cut(s)	17, 388
BstSFI	CTRYAG	2 cut(s)	87, 286
BstSLI	GKGCMC	1 cut(s)	105
BstUI	CGCG	3 cut(s)	174, 176, 355
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	176, 247
CfoI	GCGC	2 cut(s)	176, 178
Cfr10I	RCCGGY	1 cut(s)	245
CseI	GACGC	2 cut(s)	46, 361
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	25, 283
CviQI	GTAC	2 cut(s)	25, 283
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Ecl136II	GAGCTC	2 cut(s)	65, 82
Eco24I	GRGCYC	2 cut(s)	67, 84
Eco53kI	GAGCTC	2 cut(s)	65, 82
Eco57I	CTGAAG	2 cut(s)	203, 345
EcoICRI	GAGCTC	2 cut(s)	65, 82
EcoRII	CCWGG	2 cut(s)	17, 388
EcoT38I	GRGCYC	2 cut(s)	67, 84
FaiI	YATR	4 cut(s)	260, 297, 331, 396
Fnu4HI	GCNGC	4 cut(s)	151, 172, 179, 292
FriOI	GRGCYC	2 cut(s)	67, 84
Fsp4HI	GCNGC	4 cut(s)	151, 172, 179, 292
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	2 cut(s)	175, 177
GluI	GCNGC	4 cut(s)	151, 172, 179, 292
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	2 cut(s)	46, 361
HhaI	GCGC	2 cut(s)	176, 178
Hin1I	GRCGYC	1 cut(s)	44
Hin6I	GCGC	2 cut(s)	174, 176
HinP1I	GCGC	2 cut(s)	174, 176
HinfI	GANTC	3 cut(s)	407, 413, 434
HpaII	CCGG	1 cut(s)	246
Hpy188I	TCNGA	6 cut(s)	62, 69, 199, 231, 412, 418
Hpy99I	CGWCG	4 cut(s)	46, 49, 52, 62
HpyAV	CCTTC	2 cut(s)	178, 421
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	3 cut(s)	89, 262, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	44
HspAI	GCGC	2 cut(s)	174, 176
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	333
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	62, 70
LpnPI	CCDG	9 cut(s)	4, 31, 41, 75, 248, 259, 319, 375, 402
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	2 cut(s)	301, 353
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	44
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	2 cut(s)	178, 351
MhlI	GDGCHC	3 cut(s)	67, 84, 105
MluCI	AATT	2 cut(s)	93, 422
MmeI	TCCRAC	3 cut(s)	40, 105, 177
MnlI	CCTC	5 cut(s)	63, 121, 153, 181, 229
MroNI	GCCGGC	1 cut(s)	245
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	181, 291
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	2 cut(s)	19, 390
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	2 cut(s)	19, 390
MvnI	CGCG	3 cut(s)	174, 176, 355
MwoI	GCNNNNNNNGC	1 cut(s)	28
NaeI	GCCGGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	333
NgoMIV	GCCGGC	1 cut(s)	245
PaqCI	CACCTGC	1 cut(s)	253
PauI	GCGCGC	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	161
PctI	GAATGC	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	407, 413
PflFI	GACNNNGTC	2 cut(s)	46, 355
PkrI	GCNGC	4 cut(s)	152, 173, 180, 293
PshBI	ATTAAT	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	2 cut(s)	67, 84
Psp6I	CCWGG	2 cut(s)	17, 388
PspGI	CCWGG	2 cut(s)	17, 388
PstI	CTGCAG	1 cut(s)	91
PsyI	GACNNNGTC	2 cut(s)	46, 355
PteI	GCGCGC	1 cut(s)	174
RsaI	GTAC	2 cut(s)	26, 284
RsaNI	GTAC	2 cut(s)	25, 283
SacI	GAGCTC	2 cut(s)	67, 84
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	4 cut(s)	151, 172, 179, 292
Sau3AI	GATC	1 cut(s)	333
ScrFI	CCNGG	2 cut(s)	19, 390
SduI	GDGCHC	3 cut(s)	67, 84, 105
SetI	ASST	9 cut(s)	33, 47, 67, 84, 155, 192, 267, 367, 394
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	2 cut(s)	301, 353
SfcI	CTRYAG	2 cut(s)	87, 286
Sse9I	AATT	2 cut(s)	93, 422
SsiI	CCGC	6 cut(s)	115, 172, 179, 211, 291, 355
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	2 cut(s)	67, 84
StyD4I	CCNGG	2 cut(s)	17, 388
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	110, 146
TasI	AATT	2 cut(s)	93, 422
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	3 cut(s)	174, 181, 294
TfiI	GAWTC	2 cut(s)	407, 413
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	1 cut(s)	150
TspDTI	ATGAA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	91
Tth111I	GACNNNGTC	2 cut(s)	46, 355
VspI	ATTAAT	1 cut(s)	255
XspI	CTAG	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.