Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

62696760 .. 62698915

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG350500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGAAAGTCACTTCCTTCCTCGACCCGGCTCCAAAACTTGACCCGAATCATCTCCTCCGACAAGTTCTCGCGCCCCCCGAAACGCCCGACCCAAGTCCGGGTTTCGCCGCCGCAAACCGCGAAAACGGGTAATATTCTCCGGGTCGACCCGGAGAAAGCCGGGCTGAAGATGGAGAGCTCCGAAGAGCAGAGACGGGTCCCGCTGGCCCGGGTCGTATCGGACTGCGCCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAAGGGCGGCGACTCCGCAATGCAGGTCTTGGTGGGCCAGATGTATCACAGTGGCTATGGTGTTCAGAAAAACCCAGAAAAGGTTGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

10.19

Isoelectric Point (pI)

64.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	73, 122
AciI	CCGC	7 cut(s)	110, 113, 120, 203, 235, 270, 279
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	5 cut(s)	27, 99, 100, 237, 343
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	3 cut(s)	207, 261, 298
AspLEI	GCGC	2 cut(s)	75, 230
AspS9I	GGNCC	3 cut(s)	199, 208, 298
AsuC2I	CCSGG	7 cut(s)	28, 101, 143, 152, 163, 211, 212
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	1 cut(s)	166
BcnI	CCSGG	7 cut(s)	28, 101, 143, 152, 163, 211, 212
BcoDI	GTCTC	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	3 cut(s)	110, 113, 271
BlsI	GCNGC	3 cut(s)	111, 114, 272
Bme1390I	CCNGG	7 cut(s)	28, 101, 143, 152, 163, 211, 212
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	3 cut(s)	199, 208, 298
BmiI	GGNNCC	3 cut(s)	32, 200, 201
BmrFI	CCNGG	7 cut(s)	28, 101, 143, 152, 163, 211, 212
BoxI	GACNNNNGTC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	7 cut(s)	28, 101, 143, 152, 163, 211, 212
BsaJI	CCNNGG	2 cut(s)	210, 264
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 99, 100, 237, 343
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	210, 264
BseLI	CCNNNNNNNGG	5 cut(s)	27, 99, 100, 237, 343
BseMI	GCAATG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	73, 122
BshFI	GGCC	3 cut(s)	209, 263, 300
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	6 cut(s)	28, 100, 142, 152, 162, 211
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	5 cut(s)	27, 99, 100, 237, 343
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	3 cut(s)	209, 263, 300
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	182
BspACI	CCGC	7 cut(s)	110, 113, 120, 203, 235, 270, 279
BspANI	GGCC	3 cut(s)	209, 263, 300
BspFNI	CGCG	2 cut(s)	73, 122
BspLI	GGNNCC	3 cut(s)	32, 200, 201
BspMI	ACCTGC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	210, 264
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	207
BstFNI	CGCG	2 cut(s)	73, 122
BstHHI	GCGC	2 cut(s)	75, 230
BstMAI	GTCTC	1 cut(s)	187
BstPAI	GACNNNNGTC	1 cut(s)	95
BstSCI	CCNGG	7 cut(s)	26, 99, 141, 150, 161, 209, 210
BstUI	CGCG	2 cut(s)	73, 122
BsuRI	GGCC	3 cut(s)	209, 263, 300
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	2 cut(s)	75, 230
Cfr13I	GGNCC	3 cut(s)	199, 208, 298
Cfr9I	CCCGGG	1 cut(s)	210
CviJI	RGCY	8 cut(s)	31, 161, 166, 180, 209, 263, 300, 318
CviKI_1	RGCY	8 cut(s)	31, 161, 166, 180, 209, 263, 300, 318
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	187
FaiI	YATR	1 cut(s)	321
FaqI	GGGAC	1 cut(s)	185
FauI	CCCGC	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	110, 113, 271
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	110, 113, 271
GlaI	GCGC	2 cut(s)	74, 229
GluI	GCNGC	3 cut(s)	110, 113, 271
HaeIII	GGCC	3 cut(s)	209, 263, 300
HapII	CCGG	6 cut(s)	28, 100, 142, 152, 162, 211
HhaI	GCGC	2 cut(s)	75, 230
Hin6I	GCGC	2 cut(s)	73, 228
HinP1I	GCGC	2 cut(s)	73, 228
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	48, 275
HpaII	CCGG	6 cut(s)	28, 100, 142, 152, 162, 211
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	4 cut(s)	61, 184, 223, 330
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	286
HspAI	GCGC	2 cut(s)	73, 228
KflI	GGGWCCC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	36, 185
MaeIII	GTNAC	1 cut(s)	9
MboII	GAAGA	2 cut(s)	181, 197
MhlI	GDGCHC	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	3 cut(s)	31, 67, 253
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	6 cut(s)	28, 100, 142, 152, 162, 211
MspR9I	CCNGG	7 cut(s)	28, 101, 143, 152, 163, 211, 212
MvnI	CGCG	2 cut(s)	73, 122
NciI	CCSGG	7 cut(s)	28, 101, 143, 152, 163, 211, 212
NlaIV	GGNNCC	3 cut(s)	32, 200, 201
NmuCI	GTSAC	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	111, 114, 272
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	32, 200, 201
PspPI	GGNCC	3 cut(s)	199, 208, 298
PspPPI	RGGWCCY	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	182
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	3 cut(s)	110, 113, 271
Sau96I	GGNCC	3 cut(s)	199, 208, 298
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	7 cut(s)	28, 101, 143, 152, 163, 211, 212
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	3 cut(s)	182, 291, 348
SinI	GGWCC	1 cut(s)	199
SmaI	CCCGGG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SsiI	CCGC	7 cut(s)	110, 113, 120, 203, 235, 270, 279
SspI	AATATT	1 cut(s)	136
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	7 cut(s)	26, 99, 141, 150, 161, 209, 210
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	23, 147
TauI	GCSGC	3 cut(s)	112, 115, 273
TfiI	GAWTC	1 cut(s)	48
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	9
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	199
XmaI	CCCGGG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.