Prupe.6G286300_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003369
Physical Location & Seq
Reverse (-)
26520996 .. 26524039
3044 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G286300.2

Sequence Viewer

Length: 309 bp
ATGGAGACTGAGAGCAGCTCAAAGAAGGAGACCAACCACCGTCTGCCGCTATCGGAGGTCGTATCGGATTGCATAAAGCGGTGGTTCAAAGACACGCTTAAAGAGGCCAAAGCCGGCGATATTAACATGCAGGTCTTGGTGGGTCAGATGTATTACAACGGTTATGGAGTTCCCAGAGATGCCCATATGGGAAGAATATGGATTACAAGAGCGTCAAGGACGCGATCTTCAGTTTGGAAAGTCAGTGATAAGCAGCCAGGTTATAATGCAAGTGATTCAGATTCAGATGAATTGAAGGGTGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

7.84

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 121
AccII CGCG 1 cut(s) 223
AciI CCGC 2 cut(s) 47, 79
AcuI CTGAAG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 88, 295
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 15, 253
BbvI GCAGC 2 cut(s) 27, 265
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 121
BisI GCNGC 3 cut(s) 16, 47, 254
BlsI GCNGC 3 cut(s) 17, 48, 255
Bme1390I CCNGG 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 169
BplI GAGNNNNNCTC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 27, 265
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 2 cut(s) 47, 79
BspANI GGCC 1 cut(s) 107
BspFNI CGCG 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 41, 161
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 9, 306
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 256
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 27, 265
BsuRI GGCC 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 113
CseI GACGC 2 cut(s) 201, 229
CviAII CATG 1 cut(s) 127
CviJI RGCY 4 cut(s) 18, 107, 113, 256
CviKI_1 RGCY 4 cut(s) 18, 107, 113, 256
DdeI CTNAG 2 cut(s) 9, 306
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
Eco31I GGTCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 130
FaiI YATR 7 cut(s) 74, 128, 165, 186, 188, 199, 264
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 1 cut(s) 126
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 16, 47, 254
Fsp4HI GCNGC 3 cut(s) 16, 47, 254
GluI GCNGC 3 cut(s) 16, 47, 254
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 114
HgaI GACGC 2 cut(s) 201, 229
Hin1II CATG 1 cut(s) 130
HinfI GANTC 3 cut(s) 275, 281, 302
HpaII CCGG 1 cut(s) 114
Hpy188I TCNGA 5 cut(s) 55, 67, 147, 280, 286
HpyAV CCTTC 2 cut(s) 19, 289
HpyCH4III ACNGT 2 cut(s) 41, 161
HpyCH4V TGCA 3 cut(s) 72, 130, 269
HpyF3I CTNAG 2 cut(s) 9, 306
Hsp92II CATG 1 cut(s) 130
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 224
LpnPI CCDG 5 cut(s) 116, 127, 187, 243, 270
Lsp1109I GCAGC 2 cut(s) 27, 265
LweI GCATC 1 cut(s) 169
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 2 cut(s) 204, 219
MluCI AATT 1 cut(s) 290
MnlI CCTC 2 cut(s) 49, 97
MroNI GCCGGC 1 cut(s) 113
MseI TTAA 2 cut(s) 99, 123
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 223
NaeI GCCGGC 1 cut(s) 115
NdeI CATATG 1 cut(s) 186
NdeII GATC 1 cut(s) 224
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 130
NspI RCATGY 1 cut(s) 130
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 3 cut(s) 275, 281, 302
PkrI GCNGC 3 cut(s) 17, 48, 255
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
SaqAI TTAA 2 cut(s) 99, 123
SatI GCNGC 3 cut(s) 16, 47, 254
Sau3AI GATC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 258
SetI ASST 4 cut(s) 20, 60, 135, 262
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 1 cut(s) 290
SsiI CCGC 2 cut(s) 47, 79
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 2 cut(s) 41, 161
TasI AATT 1 cut(s) 290
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 3 cut(s) 275, 281, 302
Tru1I TTAA 2 cut(s) 99, 123
Tru9I TTAA 2 cut(s) 99, 123
TscAI CASTG 1 cut(s) 250
TseI GCWGC 2 cut(s) 15, 253
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 1 cut(s) 250
XceI RCATGY 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.