Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

60602172 .. 60604299

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGAAAGTCACTTCCTTCCTCGACCCGGCTCCAAAACTTGACCCGAATCATCTCCTCCGACAAGTTCTCGCGCCCCCCGAAACGCCCGACCCAAGTCCGGGTTTCGCCGCCGCAAACCGCGAAAACGGGTAATATTCTCCGGGTCGACCCGGAGAAAGCCGTGCTGAAGATGGAGAGCTCCGAAGAGCAGAGACGGGTCCCGCTGGCCCGGGTCGTATCGGACTGCGCCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAAGGGCGGCGACTCCGCAATGCAGGTCTTGGTGGGCCAGATGTATCACAGTGGCTATGGTGTTCAGAAAAACCCAGAAAAGGGACATGCTTGGATCAGTAGAGCTTCAAGAAGTCGAAGATCGGTTTGGAAAGTAAGCGAGAAGCAACCAGGTTACCACGCAAGTGATTCCGACTCGGATGAATTGGAAGAGGATGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.41

Weight (kDa)

9.85

Isoelectric Point (pI)

75.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	73, 122
AciI	CCGC	7 cut(s)	110, 113, 120, 203, 235, 270, 279
AclWI	GGATC	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	6 cut(s)	27, 99, 100, 237, 343, 344
AgsI	TTSAA	1 cut(s)	372
AjnI	CCWGG	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	2 cut(s)	180, 368
AluI	AGCT	2 cut(s)	180, 368
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	3 cut(s)	207, 261, 298
AspLEI	GCGC	2 cut(s)	75, 230
AspS9I	GGNCC	3 cut(s)	199, 208, 298
AsuC2I	CCSGG	6 cut(s)	28, 101, 143, 152, 211, 212
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	6 cut(s)	28, 101, 143, 152, 211, 212
BcoDI	GTCTC	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	3 cut(s)	110, 113, 271
BlsI	GCNGC	3 cut(s)	111, 114, 272
Bme1390I	CCNGG	7 cut(s)	28, 101, 143, 152, 211, 212, 414
Bme18I	GGWCC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	3 cut(s)	199, 208, 298
BmiI	GGNNCC	3 cut(s)	32, 200, 201
BmrFI	CCNGG	7 cut(s)	28, 101, 143, 152, 211, 212, 414
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	6 cut(s)	28, 101, 143, 152, 211, 212
BsaJI	CCNNGG	2 cut(s)	210, 264
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 99, 100, 237, 343, 344
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	210, 264
BseGI	GGATG	2 cut(s)	448, 463
BseLI	CCNNNNNNNGG	6 cut(s)	27, 99, 100, 237, 343, 344
BseMI	GCAATG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	73, 122
BshFI	GGCC	3 cut(s)	209, 263, 300
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	5 cut(s)	28, 100, 142, 152, 211
BslFI	GGGAC	2 cut(s)	185, 360
BslI	CCNNNNNNNGG	6 cut(s)	27, 99, 100, 237, 343, 344
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	185, 360
BsnI	GGCC	3 cut(s)	209, 263, 300
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	357, 383
BspACI	CCGC	7 cut(s)	110, 113, 120, 203, 235, 270, 279
BspANI	GGCC	3 cut(s)	209, 263, 300
BspFNI	CGCG	2 cut(s)	73, 122
BspLI	GGNNCC	3 cut(s)	32, 200, 201
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	365
BspQI	GCTCTTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	210, 264
BssMI	GATC	2 cut(s)	357, 383
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	180, 447
BstC8I	GCNNGC	1 cut(s)	207
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	448, 463
BstFNI	CGCG	2 cut(s)	73, 122
BstHHI	GCGC	2 cut(s)	75, 230
BstKTI	GATC	2 cut(s)	360, 386
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	357, 383
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	353
BstPAI	GACNNNNGTC	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	7 cut(s)	26, 99, 141, 150, 209, 210, 412
BstUI	CGCG	2 cut(s)	73, 122
BsuRI	GGCC	3 cut(s)	209, 263, 300
BtsCI	GGATG	2 cut(s)	448, 463
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	2 cut(s)	75, 230
Cfr13I	GGNCC	3 cut(s)	199, 208, 298
Cfr9I	CCCGGG	1 cut(s)	210
CsiI	ACCWGGT	1 cut(s)	412
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	8 cut(s)	31, 161, 180, 209, 263, 300, 318, 368
CviKI_1	RGCY	8 cut(s)	31, 161, 180, 209, 263, 300, 318, 368
DpnI	GATC	2 cut(s)	359, 385
DpnII	GATC	2 cut(s)	357, 383
Eam1104I	CTCTTC	2 cut(s)	180, 447
EarI	CTCTTC	2 cut(s)	180, 447
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	1 cut(s)	353
FaiI	YATR	2 cut(s)	321, 351
FaqI	GGGAC	2 cut(s)	185, 360
FatI	CATG	1 cut(s)	349
FauI	CCCGC	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	110, 113, 271
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	110, 113, 271
GlaI	GCGC	2 cut(s)	74, 229
GluI	GCNGC	3 cut(s)	110, 113, 271
HaeIII	GGCC	3 cut(s)	209, 263, 300
HapII	CCGG	5 cut(s)	28, 100, 142, 152, 211
HhaI	GCGC	2 cut(s)	75, 230
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	2 cut(s)	73, 228
HinP1I	GCGC	2 cut(s)	73, 228
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	4 cut(s)	48, 275, 431, 437
HpaII	CCGG	5 cut(s)	28, 100, 142, 152, 211
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	6 cut(s)	61, 184, 223, 330, 436, 442
Hpy188III	TCNNGA	2 cut(s)	245, 372
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	2 cut(s)	286, 461
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	2 cut(s)	73, 228
KflI	GGGWCCC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	357, 383
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	36, 185
LweI	GCATC	1 cut(s)	448
MabI	ACCWGGT	1 cut(s)	412
MaeIII	GTNAC	2 cut(s)	9, 416
MalI	GATC	2 cut(s)	359, 385
MboI	GATC	2 cut(s)	357, 383
MboII	GAAGA	4 cut(s)	181, 197, 393, 464
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	1 cut(s)	446
MlyI	GAGTC	2 cut(s)	269, 431
MmeI	TCCRAC	2 cut(s)	84, 459
MnlI	CCTC	4 cut(s)	31, 67, 253, 448
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	5 cut(s)	28, 100, 142, 152, 211
MspR9I	CCNGG	7 cut(s)	28, 101, 143, 152, 211, 212, 414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	2 cut(s)	73, 122
NciI	CCSGG	6 cut(s)	28, 101, 143, 152, 211, 212
NdeII	GATC	2 cut(s)	357, 383
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	3 cut(s)	32, 200, 201
NmuCI	GTSAC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	353
OliI	CACNNNNGTG	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	48, 431
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	111, 114, 272
PleI	GAGTC	2 cut(s)	269, 431
PpsI	GAGTC	2 cut(s)	269, 431
PpuMI	RGGWCCY	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	412
PspEI	GGTNACC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	32, 200, 201
PspPI	GGNCC	3 cut(s)	199, 208, 298
PspPPI	RGGWCCY	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	182
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	3 cut(s)	110, 113, 271
Sau3AI	GATC	2 cut(s)	357, 383
Sau96I	GGNCC	3 cut(s)	199, 208, 298
SchI	GAGTC	2 cut(s)	269, 431
ScrFI	CCNGG	7 cut(s)	28, 101, 143, 152, 211, 212, 414
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	4 cut(s)	182, 291, 370, 418
SexAI	ACCWGGT	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	199
SmaI	CCCGGG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	446
SsiI	CCGC	7 cut(s)	110, 113, 120, 203, 235, 270, 279
SspI	AATATT	1 cut(s)	136
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	7 cut(s)	26, 99, 141, 150, 209, 210, 412
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	3 cut(s)	23, 147, 379
TasI	AATT	1 cut(s)	446
TauI	GCSGC	3 cut(s)	112, 115, 273
TfiI	GAWTC	2 cut(s)	48, 431
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	459
TspMI	CCCGGG	1 cut(s)	210
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	199
XceI	RCATGY	1 cut(s)	353
XmaI	CCCGGG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.