Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

25827421 .. 25829862

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1168100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGACTGAGAGCAGCTCAGTGAAGGCGAGCAGCAGCAGCAACGAACATCGCGTGCCGCTCTCCGCCGTCGTGTCGGACTGCATAAAGCGGTGGTTCAAGGACACGCTCAAGGAGGCCAAAGCTGGCGATATTAACATGCAGGTTTTGGTGGGACAGATGTATTACAACGGCTATGGCGTCCCCAGAGATGACCACATGGGAAGAGTATGGATTACAAGAGCCTCGAGGACTCGATCTTCGGTTTGGAAAGTTAGTGATAAGCAGCCAGGTTATAATGCAAGTGACTCAGATTCAGATGAACTGAAGGGTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.82

Weight (kDa)

6.72

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AbsI	CCTCGAGG	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	61
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	59, 66, 91
AcyI	GRCGYC	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	18, 125
AluI	AGCT	2 cut(s)	18, 125
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	5 cut(s)	15, 33, 36, 39, 265
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AvaI	CYCGRG	1 cut(s)	226
BbvI	GCAGC	5 cut(s)	27, 45, 48, 51, 277
BceAI	ACGGC	2 cut(s)	53, 187
BciT130I	CCWGG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	6 cut(s)	16, 34, 37, 40, 59, 266
BlsI	GCNGC	6 cut(s)	17, 35, 38, 41, 60, 267
Bme1390I	CCNGG	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	270
BplI	GAGNNNNNCTC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	33, 303
BseXI	GCAGC	5 cut(s)	27, 45, 48, 51, 277
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	226
BslFI	GGGAC	2 cut(s)	167, 168
BsmFI	GGGAC	2 cut(s)	167, 168
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	3 cut(s)	59, 66, 91
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	2 cut(s)	32, 302
BspFNI	CGCG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	61
BssMI	GATC	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	31, 56, 127
BstDEI	CTNAG	4 cut(s)	9, 19, 289, 318
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	5 cut(s)	27, 45, 48, 51, 277
BsuRI	GGCC	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	31, 56, 127
CseI	GACGC	1 cut(s)	169
CviAII	CATG	2 cut(s)	139, 199
CviJI	RGCY	6 cut(s)	18, 119, 125, 174, 224, 268
CviKI_1	RGCY	6 cut(s)	18, 119, 125, 174, 224, 268
DdeI	CTNAG	4 cut(s)	9, 19, 289, 318
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	268
FaeI	CATG	2 cut(s)	142, 202
FaiI	YATR	6 cut(s)	86, 140, 177, 200, 211, 276
FaqI	GGGAC	2 cut(s)	167, 168
FatI	CATG	2 cut(s)	138, 198
Fnu4HI	GCNGC	6 cut(s)	16, 34, 37, 40, 59, 266
Fsp4HI	GCNGC	6 cut(s)	16, 34, 37, 40, 59, 266
GluI	GCNGC	6 cut(s)	16, 34, 37, 40, 59, 266
HaeIII	GGCC	1 cut(s)	119
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	142, 202
HinfI	GANTC	4 cut(s)	232, 287, 293, 314
Hpy188I	TCNGA	3 cut(s)	79, 292, 298
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	19, 301
HpyCH4V	TGCA	3 cut(s)	84, 142, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	4 cut(s)	9, 19, 289, 318
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	142, 202
Kzo9I	GATC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	111, 128, 199, 255, 282
Lsp1109I	GCAGC	5 cut(s)	27, 45, 48, 51, 277
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	238
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	216, 231
MlyI	GAGTC	2 cut(s)	226, 281
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	109, 222, 235
MseI	TTAA	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	142, 202
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 177
PfeI	GAWTC	2 cut(s)	293, 314
PkrI	GCNGC	6 cut(s)	17, 35, 38, 41, 60, 267
PleI	GAGTC	2 cut(s)	226, 281
PpsI	GAGTC	2 cut(s)	226, 281
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	6 cut(s)	16, 34, 37, 40, 59, 266
Sau3AI	GATC	1 cut(s)	236
SchI	GAGTC	2 cut(s)	226, 281
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	4 cut(s)	20, 127, 147, 274
Sfr274I	CTCGAG	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	226
SmlI	CTYRAG	2 cut(s)	110, 226
SmoI	CTYRAG	2 cut(s)	110, 226
SsiI	CCGC	3 cut(s)	59, 66, 91
StyD4I	CCNGG	1 cut(s)	268
TaqI	TCGA	2 cut(s)	227, 235
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	293, 314
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	5 cut(s)	15, 33, 36, 39, 265
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	27
XceI	RCATGY	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.