Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

6106402 .. 6111687

Gene Structure 5286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGACTTCGAGCAGCTCGCAGAAGGAGAAGAGCCAGGCGCCGCTGAAGGAGGTTGTATCGGAATGCGTGAAGCGGTGGTTCAAGGATACTCTCAAAGAGGCTAAAGCTGGTGATATTAATATGCAGATTTTGGTGGGGCAGATGTACTATAGCGGCTATGGTGTTCCCAGAGATGCCCATTTGGGAAGAGTATGGATCACAAGAGCATCGAGGACGCGGTCTTCGGCTTGGAAAGTTTGTGAAAAGCCACCAGGTTATAATGCAAGTGATTCAGATTCGGATGAATTGAAGGGGGAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.3

Weight (kDa)

8.56

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	1 cut(s)	220
AciI	CCGC	4 cut(s)	44, 76, 156, 220
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	85, 292
AjnI	CCWGG	2 cut(s)	36, 253
AluBI	AGCT	2 cut(s)	18, 110
AluI	AGCT	2 cut(s)	18, 110
AlwI	GGATC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	38, 255
BciVI	GTATCC	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	151
BfoI	RGCGCY	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	3 cut(s)	16, 44, 157
BlsI	GCNGC	3 cut(s)	17, 45, 158
Bme1390I	CCNGG	2 cut(s)	38, 255
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	2 cut(s)	38, 255
BmsI	GCATC	2 cut(s)	166, 218
BpiI	GAAGAC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	38, 255
BseGI	GGATG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	4 cut(s)	44, 76, 156, 220
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	40
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	38, 255
Bst6I	CTCTTC	2 cut(s)	26, 184
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	220
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstNI	CCWGG	2 cut(s)	38, 255
BstSCI	CCNGG	2 cut(s)	36, 253
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	148
CviJI	RGCY	7 cut(s)	18, 36, 104, 110, 159, 230, 250
CviKI_1	RGCY	7 cut(s)	18, 36, 104, 110, 159, 230, 250
CviQI	GTAC	1 cut(s)	148
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	26, 184
EarI	CTCTTC	2 cut(s)	26, 184
Eco57I	CTGAAG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	36, 253
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaiI	YATR	5 cut(s)	125, 153, 162, 196, 261
Fnu4HI	GCNGC	3 cut(s)	16, 44, 157
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	3 cut(s)	16, 44, 157
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	3 cut(s)	16, 44, 157
HaeII	RGCGCY	1 cut(s)	44
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	3 cut(s)	272, 278, 299
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	64, 277, 283
HpyAV	CCTTC	3 cut(s)	19, 43, 286
HpyCH4V	TGCA	2 cut(s)	127, 266
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	198
LguI	GCTCTTC	1 cut(s)	26
LpnPI	CCDG	6 cut(s)	23, 50, 96, 184, 240, 267
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	2 cut(s)	166, 218
MabI	ACCWGGT	1 cut(s)	253
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	3 cut(s)	43, 201, 216
MluCI	AATT	1 cut(s)	287
Mly113I	GGCGCC	1 cut(s)	41
MnlI	CCTC	3 cut(s)	46, 94, 207
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	38, 255
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	38, 255
MvnI	CGCG	1 cut(s)	220
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	1 cut(s)	198
NlaIV	GGNNCC	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	272, 278, 299
PflFI	GACNNNGTC	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	17, 45, 158
PluTI	GGCGCC	1 cut(s)	44
PshBI	ATTAAT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	36, 253
PspGI	CCWGG	2 cut(s)	36, 253
PspN4I	GGNNCC	1 cut(s)	42
PsyI	GACNNNGTC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	16, 44, 157
Sau3AI	GATC	1 cut(s)	198
ScrFI	CCNGG	2 cut(s)	38, 255
SetI	ASST	4 cut(s)	20, 57, 112, 259
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	166, 218
SfcI	CTRYAG	1 cut(s)	151
SfoI	GGCGCC	1 cut(s)	42
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	4 cut(s)	44, 76, 156, 220
SspDI	GGCGCC	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	36, 253
TaqI	TCGA	2 cut(s)	11, 212
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	46, 159
TfiI	GAWTC	3 cut(s)	272, 278, 299
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	300
Tth111I	GACNNNGTC	1 cut(s)	220
VspI	ATTAAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.