Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

19413620 .. 19415198

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGAAAGTCCCTCCCTTCCTCGACCCGGTTCCAAAACTTGACCCGAATCATCGCCTCCGAAAAGTTCTCGCGCCCGACACGCCCGATCCAAGTCCGGGTTTCGCCGCCGCAAACCGCGAAAACGGGTACCAGTCTCCGGGTCGACTCGGAGCTAGTCGGGCTGAAGATGGAGAGCTCCGAAGGGCAGAGTCGGGTCCCGCTGGCCCGGGTTGTATCGGACTGTGCGAAGCGGTGGTTTCAGGACACGCTGAAGGAGGCCAAGGGCGGCGACACCGCAATGCAGGTGTTGGTGGGGCAGATGTATCACAGTGGCTATGGTGTTGAGAAGAACCCAGAAAAGGGACATGCTTGGATTAGTAGAGCTTCAAGAAGTCGAAGGGCAGTTTGGAAAGTAAGCCAGAAGCAACCAGGTTACCACGCAAGTGATTCCGACTCGGATGAATTGGAAGATGTTGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.08

Weight (kDa)

9.83

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	274
Acc36I	ACCTGC	1 cut(s)	274
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	73, 119
AciI	CCGC	7 cut(s)	107, 110, 117, 200, 232, 267, 276
AclWI	GGATC	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	185, 272
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	5 cut(s)	27, 97, 138, 340, 341
AgsI	TTSAA	1 cut(s)	369
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AleI	CACNNNNGTG	1 cut(s)	423
AluBI	AGCT	3 cut(s)	154, 177, 365
AluI	AGCT	3 cut(s)	154, 177, 365
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	2 cut(s)	204, 258
Asp718I	GGTACC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	196, 205
AsuC2I	CCSGG	5 cut(s)	28, 98, 140, 208, 209
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	179
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	411
BcnI	CCSGG	5 cut(s)	28, 98, 140, 208, 209
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	274
BisI	GCNGC	3 cut(s)	107, 110, 268
BlsI	GCNGC	3 cut(s)	108, 111, 269
Bme1390I	CCNGG	6 cut(s)	28, 98, 140, 208, 209, 411
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	196, 205
BmiI	GGNNCC	4 cut(s)	32, 130, 197, 198
BmrFI	CCNGG	6 cut(s)	28, 98, 140, 208, 209, 411
BpuMI	CCSGG	5 cut(s)	28, 98, 140, 208, 209
BsaJI	CCNNGG	2 cut(s)	207, 261
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 97, 138, 340, 341
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	207, 261
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	5 cut(s)	27, 97, 138, 340, 341
BseMI	GCAATG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	132
Bsh1236I	CGCG	2 cut(s)	73, 119
BshFI	GGCC	2 cut(s)	206, 260
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	4 cut(s)	28, 97, 139, 208
BslFI	GGGAC	2 cut(s)	182, 357
BslI	CCNNNNNNNGG	5 cut(s)	27, 97, 138, 340, 341
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	182, 357
BsnI	GGCC	2 cut(s)	206, 260
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	7 cut(s)	107, 110, 117, 200, 232, 267, 276
BspANI	GGCC	2 cut(s)	206, 260
BspFNI	CGCG	2 cut(s)	73, 119
BspLI	GGNNCC	4 cut(s)	32, 130, 197, 198
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	207, 261
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	224, 311
BstC8I	GCNNGC	1 cut(s)	204
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	2 cut(s)	73, 119
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 160
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	350
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	6 cut(s)	26, 96, 138, 206, 207, 409
BstUI	CGCG	2 cut(s)	73, 119
BsuRI	GGCC	2 cut(s)	206, 260
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	196, 205
Cfr9I	CCCGGG	1 cut(s)	207
CsiI	ACCWGGT	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	8 cut(s)	154, 163, 177, 206, 260, 315, 365, 399
CviKI_1	RGCY	8 cut(s)	154, 163, 177, 206, 260, 315, 365, 399
CviQI	GTAC	1 cut(s)	129
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	185, 272
Eco88I	CYCGRG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	350
FaiI	YATR	2 cut(s)	318, 348
FaqI	GGGAC	2 cut(s)	182, 357
FatI	CATG	1 cut(s)	346
FauI	CCCGC	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	107, 110, 268
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	3 cut(s)	107, 110, 268
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	107, 110, 268
HaeIII	GGCC	2 cut(s)	206, 260
HapII	CCGG	4 cut(s)	28, 97, 139, 208
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	5 cut(s)	48, 146, 190, 428, 434
HpaII	CCGG	4 cut(s)	28, 97, 139, 208
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	6 cut(s)	61, 151, 181, 220, 433, 439
Hpy188III	TCNNGA	2 cut(s)	242, 369
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	4 cut(s)	27, 176, 247, 372
HpyCH4III	ACNGT	2 cut(s)	224, 311
HpyCH4V	TGCA	2 cut(s)	283, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 160
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	1 cut(s)	73
KflI	GGGWCCC	1 cut(s)	196
KpnI	GGTACC	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	151, 182
MabI	ACCWGGT	1 cut(s)	409
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	3 cut(s)	178, 340, 461
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	3 cut(s)	140, 199, 428
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	4 cut(s)	23, 31, 67, 250
MslI	CAYNNNNRTG	2 cut(s)	278, 423
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	4 cut(s)	28, 97, 139, 208
MspR9I	CCNGG	6 cut(s)	28, 98, 140, 208, 209, 411
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	2 cut(s)	73, 119
MwoI	GCNNNNNNNGC	2 cut(s)	81, 160
NciI	CCSGG	5 cut(s)	28, 98, 140, 208, 209
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	4 cut(s)	32, 130, 197, 198
NspI	RCATGY	1 cut(s)	350
OliI	CACNNNNGTG	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	48, 428
PkrI	GCNGC	3 cut(s)	108, 111, 269
PleI	GAGTC	3 cut(s)	140, 198, 428
PpsI	GAGTC	3 cut(s)	140, 198, 428
PpuMI	RGGWCCY	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	409
PspEI	GGTNACC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	32, 130, 197, 198
PspPI	GGNCC	2 cut(s)	196, 205
PspPPI	RGGWCCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	2 cut(s)	278, 423
SacI	GAGCTC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	143
SatI	GCNGC	3 cut(s)	107, 110, 268
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	2 cut(s)	196, 205
SchI	GAGTC	3 cut(s)	140, 199, 428
ScrFI	CCNGG	6 cut(s)	28, 98, 140, 208, 209, 411
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	5 cut(s)	156, 179, 288, 367, 415
SexAI	ACCWGGT	1 cut(s)	409
SinI	GGWCC	1 cut(s)	196
SmaI	CCCGGG	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	278, 423
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	7 cut(s)	107, 110, 117, 200, 232, 267, 276
SspMI	CTAG	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	6 cut(s)	26, 96, 138, 206, 207, 409
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	224, 311
TaqI	TCGA	3 cut(s)	23, 144, 376
TasI	AATT	1 cut(s)	443
TauI	GCSGC	3 cut(s)	109, 112, 270
TfiI	GAWTC	2 cut(s)	48, 428
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	456
TspMI	CCCGGG	1 cut(s)	207
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	350
XmaI	CCCGGG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.