Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

60882138 .. 60882401

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG375800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGCCAAGTCCGGGTTTCGCCGCCGCAAACAGCAAAAACGGGCAATATTCTCCGGGTTGATCCAGAGCGAGCTGAGCTAAAGATGGAGAGCTCCGAAGAGCAATGGAGGGTCCCTCTGGCCCAGGTCGTATCAGACTGCTCCAAATGGCGGTTTCAGGACACGCTCAAGGAAGCCAAGGGCGTTGACTTTGCAATGCAGGTCTTGGTGGGCCAGATGTATCATAATGGCTATGATGTTAAAAAAATGGACATGCTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.95

Weight (kDa)

6.56

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AciI	CCGC	3 cut(s)	23, 26, 151
AclWI	GGATC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	13, 150
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	74, 79, 93
AluI	AGCT	3 cut(s)	74, 79, 93
Alw21I	GWGCWC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	120, 211
AspS9I	GGNCC	3 cut(s)	112, 121, 211
AsuC2I	CCSGG	2 cut(s)	14, 56
AvaII	GGWCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	95
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	2 cut(s)	14, 56
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	2 cut(s)	23, 26
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	2 cut(s)	24, 27
Bme1390I	CCNGG	3 cut(s)	14, 56, 125
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	112, 121, 211
BmiI	GGNNCC	2 cut(s)	113, 114
BmrFI	CCNGG	3 cut(s)	14, 56, 125
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	2 cut(s)	14, 56
BsaJI	CCNNGG	2 cut(s)	123, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 150
Bse3DI	GCAATG	2 cut(s)	110, 201
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	123, 177
BseLI	CCNNNNNNNGG	2 cut(s)	13, 150
BseMI	GCAATG	2 cut(s)	110, 201
BseMII	CTCAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	122, 213
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	13, 55
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	13, 150
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	122, 213
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	61
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	3 cut(s)	23, 26, 151
BspANI	GGCC	2 cut(s)	122, 213
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	113, 114
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	93
BsrDI	GCAATG	2 cut(s)	110, 201
BssECI	CCNNGG	2 cut(s)	123, 177
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	3 cut(s)	12, 54, 123
BsuRI	GGCC	2 cut(s)	122, 213
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	112, 121, 211
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	8 cut(s)	6, 74, 79, 93, 122, 176, 213, 231
CviKI_1	RGCY	8 cut(s)	6, 74, 79, 93, 122, 176, 213, 231
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	256
FaiI	YATR	3 cut(s)	225, 234, 254
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	23, 26
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	23, 26
GluI	GCNGC	2 cut(s)	23, 26
HaeIII	GGCC	2 cut(s)	122, 213
HapII	CCGG	2 cut(s)	13, 55
Hin1II	CATG	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	13, 55
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	97, 136
Hpy188III	TCNNGA	2 cut(s)	65, 158
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	194, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	256
KflI	GGGWCCC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	98, 146
LpnPI	CCDG	9 cut(s)	26, 68, 78, 104, 110, 137, 143, 185, 227
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	95
MnlI	CCTC	2 cut(s)	102, 126
MseI	TTAA	1 cut(s)	240
MspI	CCGG	2 cut(s)	13, 55
MspR9I	CCNGG	3 cut(s)	14, 56, 125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	76
NciI	CCSGG	2 cut(s)	14, 56
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	113, 114
NspI	RCATGY	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	24, 27
PpuMI	RGGWCCY	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	113, 114
PspPI	GGNCC	3 cut(s)	112, 121, 211
PspPPI	RGGWCCY	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	95
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	23, 26
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	3 cut(s)	112, 121, 211
ScrFI	CCNGG	3 cut(s)	14, 56, 125
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	5 cut(s)	76, 81, 95, 129, 204
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SsiI	CCGC	3 cut(s)	23, 26, 151
SspI	AATATT	1 cut(s)	49
SstI	GAGCTC	1 cut(s)	95
StyD4I	CCNGG	3 cut(s)	12, 54, 123
StyI	CCWWGG	1 cut(s)	177
TauI	GCSGC	2 cut(s)	25, 28
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.