MD07G1228700.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0003369
Physical Location & Seq
Reverse (-)
30378893 .. 30380193
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1228700.v1.1.491

Sequence Viewer

Length: 438 bp
ATGGGAAAGGCACTCCCTTCACGGACCCGGTTCCAAGATTTGACCCGAATCATCGCCGCCGACAAGCTCCCGCGGCCCAGACGCGTAAAGCAAGCGTCCCAAGTTCGAATTTCGTCCCCGCAGCCGAAACCGGTCGACCCGGAGCGGGTGAAGCTGAGGATAGAGAGCTCCGAGCGGCAGAACCGGGTTCCTCTGGCCCGGAAGGTGTCGGACTGCGTGCGGCGGTGGTTTCAGGACACGCTCAAGGAGGCAAGGGCGGGCGATAGCTCCATGCAGGTGTTGGTGGGTCAGATGTATTGCAGCGGCTATGGTGTTCCTAAAGACCCCAGAAAGGGACATGCTTGGATGAATAAAGCTTCGAAAAGTAGAGCTTCGGTTTGGAAAGTGAGCGATAAGCCTCCAGATGAGTTTTCGATGCGATCTTCTTGCATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.5

Weight (kDa)

10.66

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 92 - 121 8.8e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 265
AccBSI CCGCTC 2 cut(s) 145, 175
AccI GTMKAC 1 cut(s) 135
AccII CGCG 2 cut(s) 73, 84
AcsI RAATTY 1 cut(s) 108
AfiI CCNNNNNNNGG 3 cut(s) 145, 331, 332
AflIII ACRYGT 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 130
AluBI AGCT 6 cut(s) 67, 154, 168, 267, 356, 371
AluI AGCT 6 cut(s) 67, 154, 168, 267, 356, 371
Alw21I GWGCWC 1 cut(s) 170
AoxI GGCC 2 cut(s) 74, 195
ApeKI GCWGC 2 cut(s) 121, 300
ApoI RAATTY 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 130
AspS9I GGNCC 3 cut(s) 24, 75, 196
AsuC2I CCSGG 4 cut(s) 28, 140, 185, 199
AsuHPI GGTGA 1 cut(s) 160
AsuII TTCGAA 2 cut(s) 106, 359
AvaII GGWCC 1 cut(s) 24
BanII GRGCYC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 133, 312
BcgI CGANNNNNNTGC 1 cut(s) 408
BcnI CCSGG 4 cut(s) 28, 140, 185, 199
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 7 cut(s) 57, 74, 122, 176, 221, 301, 304
BlsI GCNGC 7 cut(s) 58, 75, 123, 177, 222, 302, 305
Bme1390I CCNGG 4 cut(s) 28, 140, 185, 199
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 3 cut(s) 24, 75, 196
BmiI GGNNCC 3 cut(s) 26, 32, 189
BmrFI CCNGG 4 cut(s) 28, 140, 185, 199
BmsI GCATC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 155
Bpu14I TTCGAA 2 cut(s) 106, 359
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 4 cut(s) 28, 140, 185, 199
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 331, 332
Bse118I RCCGGY 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 3 cut(s) 145, 331, 332
BseMII CTCAG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 133, 312
Bsh1236I CGCG 2 cut(s) 73, 84
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 76, 197
BshTI ACCGGT 1 cut(s) 130
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 5 cut(s) 28, 131, 140, 184, 199
BslFI GGGAC 3 cut(s) 82, 100, 348
BslI CCNNNNNNNGG 3 cut(s) 145, 331, 332
BsmFI GGGAC 3 cut(s) 82, 100, 348
BsnI GGCC 2 cut(s) 76, 197
Bsp119I TTCGAA 2 cut(s) 106, 359
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 419
BspANI GGCC 2 cut(s) 76, 197
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 2 cut(s) 73, 84
BspLI GGNNCC 3 cut(s) 26, 32, 189
BspMI ACCTGC 1 cut(s) 265
BspT104I TTCGAA 2 cut(s) 106, 359
BsrBI CCGCTC 2 cut(s) 145, 175
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 419
BstBI TTCGAA 2 cut(s) 106, 359
BstC8I GCNNGC 3 cut(s) 93, 218, 259
BstDEI CTNAG 2 cut(s) 155, 435
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 351
BstFNI CGCG 2 cut(s) 73, 84
BstKTI GATC 1 cut(s) 422
BstMBI GATC 1 cut(s) 419
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 73, 151
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 4 cut(s) 26, 138, 183, 197
BstUI CGCG 2 cut(s) 73, 84
BstV1I GCAGC 2 cut(s) 133, 312
BsuRI GGCC 2 cut(s) 76, 197
BtgI CCRYGG 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 93, 218, 259
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 3 cut(s) 24, 75, 196
Cfr42I CCGCGG 1 cut(s) 74
CseI GACGC 2 cut(s) 84, 90
CspAI ACCGGT 1 cut(s) 130
CviAII CATG 2 cut(s) 271, 338
DdeI CTNAG 2 cut(s) 155, 435
DpnI GATC 1 cut(s) 421
DpnII GATC 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 170
FaeI CATG 2 cut(s) 274, 341
FaiI YATR 3 cut(s) 272, 309, 339
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FaqI GGGAC 3 cut(s) 82, 100, 348
FatI CATG 2 cut(s) 270, 337
FauI CCCGC 4 cut(s) 78, 126, 138, 250
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 7 cut(s) 57, 74, 122, 176, 221, 301, 304
FokI GGATG 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 7 cut(s) 57, 74, 122, 176, 221, 301, 304
GluI GCNGC 7 cut(s) 57, 74, 122, 176, 221, 301, 304
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 2 cut(s) 76, 197
HapII CCGG 5 cut(s) 28, 131, 140, 184, 199
HgaI GACGC 2 cut(s) 84, 90
Hin1II CATG 2 cut(s) 274, 341
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 1 cut(s) 48
HpaII CCGG 5 cut(s) 28, 131, 140, 184, 199
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 172, 211, 291
Hpy188III TCNNGA 2 cut(s) 233, 401
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 27, 196
HpyCH4V TGCA 3 cut(s) 274, 300, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 151
HpyF3I CTNAG 2 cut(s) 155, 435
Hsp92II CATG 2 cut(s) 274, 341
KspI CCGCGG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 419
LmnI GCTCC 4 cut(s) 72, 142, 173, 272
Lsp1109I GCAGC 2 cut(s) 133, 312
LweI GCATC 1 cut(s) 405
MalI GATC 1 cut(s) 421
MbiI CCGCTC 2 cut(s) 145, 175
MboI GATC 1 cut(s) 419
MboII GAAGA 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 108
MluI ACGCGT 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 4 cut(s) 150, 201, 241, 408
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 2 cut(s) 73, 303
MspI CCGG 5 cut(s) 28, 131, 140, 184, 199
MspR9I CCNGG 4 cut(s) 28, 140, 185, 199
MvnI CGCG 2 cut(s) 73, 84
MwoI GCNNNNNNNGC 2 cut(s) 73, 151
NciI CCSGG 4 cut(s) 28, 140, 185, 199
NdeII GATC 1 cut(s) 419
NlaIII CATG 2 cut(s) 274, 341
NlaIV GGNNCC 3 cut(s) 26, 32, 189
NspI RCATGY 1 cut(s) 341
NspV TTCGAA 2 cut(s) 106, 359
PaqCI CACCTGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 48
PinAI ACCGGT 1 cut(s) 130
PkrI GCNGC 7 cut(s) 58, 75, 123, 177, 222, 302, 305
Psp124BI GAGCTC 1 cut(s) 170
PspN4I GGNNCC 3 cut(s) 26, 32, 189
PspPI GGNCC 3 cut(s) 24, 75, 196
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 170
SacII CCGCGG 1 cut(s) 74
SalI GTCGAC 1 cut(s) 134
SatI GCNGC 7 cut(s) 57, 74, 122, 176, 221, 301, 304
Sau3AI GATC 1 cut(s) 419
Sau96I GGNCC 3 cut(s) 24, 75, 196
ScrFI CCNGG 4 cut(s) 28, 140, 185, 199
SduI GDGCHC 1 cut(s) 170
SetI ASST 8 cut(s) 69, 156, 170, 207, 269, 279, 358, 373
SfaNI GCATC 1 cut(s) 405
Sfr303I CCGCGG 1 cut(s) 74
SfuI TTCGAA 2 cut(s) 106, 359
SgrBI CCGCGG 1 cut(s) 74
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 108
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 4 cut(s) 26, 138, 183, 197
TaqI TCGA 4 cut(s) 106, 135, 359, 413
TasI AATT 1 cut(s) 108
TauI GCSGC 5 cut(s) 59, 76, 178, 223, 306
TfiI GAWTC 1 cut(s) 48
TseI GCWGC 2 cut(s) 121, 300
TspDTI ATGAA 1 cut(s) 362
TspGWI ACGGA 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 1 cut(s) 108
XceI RCATGY 1 cut(s) 341
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.