pycom04g14910

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003369
Physical Location & Seq
Reverse (-)
17701480 .. 17702219
740 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14910.1

Sequence Viewer

Length: 327 bp
ATGGAGACTGAGAGCAGCTCAGTGAAGGCGAGCAGCAGCAGCAGCAGCAACGAACATCGCGTGCCGCTCTCCGCCGTCGTGTCGGACTGCATAAAGCGGTGGTTCAAGGACACGCTCAAGGAGGCCAAAGCTGGCGATATTAACATGCAGGTTTTAGTGGGACAGATGTATTACAACGGCTATGGCGTCCCCAGAGATGACCACATGGGAAGAGTATGGATTACAAGAGCGTCGAGGACGCGATCTTCGGTTTGGAAAGTTAGTGATAAGCAGCCAGGTTATAATGCAAGTGACTCAGATTCAGATGAACTGAAGGGTGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.99

Weight (kDa)

6.72

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 67
AccII CGCG 2 cut(s) 60, 241
AciI CCGC 3 cut(s) 65, 72, 97
AcyI GRCGYC 1 cut(s) 186
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 18, 131
AluI AGCT 2 cut(s) 18, 131
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 7 cut(s) 15, 33, 36, 39, 42, 45, 271
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
BbvI GCAGC 7 cut(s) 27, 45, 48, 51, 54, 57, 283
BceAI ACGGC 2 cut(s) 59, 193
BciT130I CCWGG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 8 cut(s) 16, 34, 37, 40, 43, 46, 65, 272
BlsI GCNGC 8 cut(s) 17, 35, 38, 41, 44, 47, 66, 273
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BplI GAGNNNNNCTC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 186
BseBI CCWGG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 33, 309
BseXI GCAGC 7 cut(s) 27, 45, 48, 51, 54, 57, 283
Bsh1236I CGCG 2 cut(s) 60, 241
BshFI GGCC 1 cut(s) 125
BslFI GGGAC 2 cut(s) 173, 174
BsmFI GGGAC 2 cut(s) 173, 174
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 3 cut(s) 65, 72, 97
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 32, 308
BspFNI CGCG 2 cut(s) 60, 241
BspMI ACCTGC 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 67
BssMI GATC 1 cut(s) 242
BssNI GRCGYC 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 31, 62, 133
BstDEI CTNAG 4 cut(s) 9, 19, 295, 324
BstFNI CGCG 2 cut(s) 60, 241
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 3 cut(s) 39, 42, 45
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 274
BstUI CGCG 2 cut(s) 60, 241
BstV1I GCAGC 7 cut(s) 27, 45, 48, 51, 54, 57, 283
BsuRI GGCC 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 27
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 3 cut(s) 31, 62, 133
CseI GACGC 3 cut(s) 175, 219, 247
CviAII CATG 2 cut(s) 145, 205
CviJI RGCY 5 cut(s) 18, 125, 131, 180, 274
CviKI_1 RGCY 5 cut(s) 18, 125, 131, 180, 274
DdeI CTNAG 4 cut(s) 9, 19, 295, 324
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
EciI GGCGGA 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 148, 208
FaiI YATR 6 cut(s) 92, 146, 183, 206, 217, 282
FaqI GGGAC 2 cut(s) 173, 174
FatI CATG 2 cut(s) 144, 204
Fnu4HI GCNGC 8 cut(s) 16, 34, 37, 40, 43, 46, 65, 272
Fsp4HI GCNGC 8 cut(s) 16, 34, 37, 40, 43, 46, 65, 272
GluI GCNGC 8 cut(s) 16, 34, 37, 40, 43, 46, 65, 272
HaeIII GGCC 1 cut(s) 125
HgaI GACGC 3 cut(s) 175, 219, 247
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 2 cut(s) 148, 208
HinfI GANTC 3 cut(s) 293, 299, 320
Hpy188I TCNGA 3 cut(s) 85, 298, 304
Hpy99I CGWCG 2 cut(s) 80, 235
HpyAV CCTTC 2 cut(s) 19, 307
HpyCH4V TGCA 3 cut(s) 90, 148, 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 42, 45
HpyF3I CTNAG 4 cut(s) 9, 19, 295, 324
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 2 cut(s) 148, 208
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 5 cut(s) 117, 134, 205, 261, 288
Lsp1109I GCAGC 7 cut(s) 27, 45, 48, 51, 54, 57, 283
MaeIII GTNAC 1 cut(s) 290
MalI GATC 1 cut(s) 244
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 242
MboII GAAGA 2 cut(s) 222, 237
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 115, 228
MseI TTAA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 2 cut(s) 60, 241
MwoI GCNNNNNNNGC 3 cut(s) 39, 42, 45
NdeII GATC 1 cut(s) 242
NlaIII CATG 2 cut(s) 148, 208
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 148
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 183
PfeI GAWTC 2 cut(s) 299, 320
PkrI GCNGC 8 cut(s) 17, 35, 38, 41, 44, 47, 66, 273
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PsiI TTATAA 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 8 cut(s) 16, 34, 37, 40, 43, 46, 65, 272
Sau3AI GATC 1 cut(s) 242
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 276
SetI ASST 4 cut(s) 20, 133, 153, 280
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 3 cut(s) 65, 72, 97
StyD4I CCNGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 233
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 299, 320
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 7 cut(s) 15, 33, 36, 39, 42, 45, 271
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 1 cut(s) 27
XceI RCATGY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.