Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

8826152 .. 8826843

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG109100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGACTTCGAGCAGCTCACAGAGGGAGAAGAGCCGCGCGCCGCTGAAGGAGGTTGTGTCGGAATGCGTGAAGCGGTGGTTCAAGGATACTCTGAAAGAGGCCAAAGCCGGCGATATTAATATGCAGGTGTTGGTGGGGCAGATGTACTACAGCGGCTATGGTGTTCCCAGAGATGCCCATTTGGGGAGAGTATGGATCACAAGAGCATCGAGAACGCGGTCTTCGGCTTGGAAAGTGTGTGAAAAGCCACCAGGTTATAATGCAAGTGATTCAGATTCAGATGAATTGAAGGGTGAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.35

Weight (kDa)

8.95

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AarI	CACCTGC	1 cut(s)	118
Acc36I	ACCTGC	1 cut(s)	118
AccII	CGCG	3 cut(s)	39, 41, 220
AciI	CCGC	5 cut(s)	37, 44, 76, 156, 220
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	85, 292
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	15
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	41, 43
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	255
BciVI	GTATCC	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	4 cut(s)	16, 37, 44, 157
BlsI	GCNGC	4 cut(s)	17, 38, 45, 158
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	166, 218
BpiI	GAAGAC	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	186
BsePI	GCGCGC	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	3 cut(s)	39, 41, 220
BshFI	GGCC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	5 cut(s)	37, 44, 76, 156, 220
BspANI	GGCC	1 cut(s)	104
BspFNI	CGCG	3 cut(s)	39, 41, 220
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssHII	GCGCGC	1 cut(s)	39
BssMI	GATC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	41, 112
BstFNI	CGCG	3 cut(s)	39, 41, 220
BstHHI	GCGC	2 cut(s)	41, 43
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	3 cut(s)	39, 41, 220
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	41, 112
CfoI	GCGC	2 cut(s)	41, 43
Cfr10I	RCCGGY	1 cut(s)	110
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	148
CviJI	RGCY	7 cut(s)	18, 36, 104, 110, 159, 230, 250
CviKI_1	RGCY	7 cut(s)	18, 36, 104, 110, 159, 230, 250
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	253
FaiI	YATR	4 cut(s)	125, 162, 196, 261
Fnu4HI	GCNGC	4 cut(s)	16, 37, 44, 157
Fsp4HI	GCNGC	4 cut(s)	16, 37, 44, 157
GlaI	GCGC	2 cut(s)	40, 42
GluI	GCNGC	4 cut(s)	16, 37, 44, 157
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	2 cut(s)	41, 43
Hin6I	GCGC	2 cut(s)	39, 41
HinP1I	GCGC	2 cut(s)	39, 41
HinfI	GANTC	3 cut(s)	272, 278, 299
HpaII	CCGG	1 cut(s)	111
Hpy188I	TCNGA	4 cut(s)	64, 96, 277, 283
Hpy188III	TCNNGA	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	43, 286
HpyCH4V	TGCA	2 cut(s)	127, 266
HspAI	GCGC	2 cut(s)	39, 41
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	198
LguI	GCTCTTC	1 cut(s)	26
LpnPI	CCDG	5 cut(s)	113, 124, 184, 240, 267
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	2 cut(s)	166, 218
MabI	ACCWGGT	1 cut(s)	253
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	43, 216
MluCI	AATT	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	3 cut(s)	18, 46, 94
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	46, 156
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	3 cut(s)	39, 41, 220
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	1 cut(s)	198
NgoMIV	GCCGGC	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	118
PauI	GCGCGC	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	272, 278
PkrI	GCNGC	4 cut(s)	17, 38, 45, 158
PshBI	ATTAAT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PteI	GCGCGC	1 cut(s)	39
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	4 cut(s)	16, 37, 44, 157
Sau3AI	GATC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	4 cut(s)	20, 57, 132, 259
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	166, 218
SfcI	CTRYAG	1 cut(s)	151
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	5 cut(s)	37, 44, 76, 156, 220
StyD4I	CCNGG	1 cut(s)	253
TaqI	TCGA	2 cut(s)	11, 212
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	3 cut(s)	39, 46, 159
TfiI	GAWTC	2 cut(s)	272, 278
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	1 cut(s)	300
VspI	ATTAAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.