Rorug01G0363700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003369
Physical Location & Seq
Reverse (-)
47877812 .. 47880905
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0363700.1

Sequence Viewer

Length: 510 bp
ATGGACGCGCCTCCATCCCAAGCCAGTCTCCTCCTCCAAAAACAACTCAAAGATCTTTGCAAGCACCCAGTTGATGGATTCTCGGCTGGTTTGATCGACGAGGCTAATATCTTCGAATGGAACGTCACGATTATTGGCCCCCCTGATACTCTCTATGATGGTGGTTTCTTCAATGCTATCATGAGCTTCCCTAACGATTACCCTAATAACCCTCCTACAGTCAGGTTTGCCTCAGAGATATGGCACCCTAATGTTTACTCGGATGGAAAGGTTTGCATTTCAATTCTTCATCCCCCAGGCGATGATCCTAATGGCTACGAGCTTGCGAGTGAGCGCTGGAATCCAGTCCATACAGTTGAGAGCATTGTTTTGAGTATAATATCAATGCTTTCATGCCCTAATGATGAGTCTCCTGCAAATGTTGAAGCTGCGAAACAATGGAGAGAAGATAGAGACGGTTTCAGGAAGAGAGTAGGTCGCTGCGTGAGGAAGTCACAAGAAATGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.91

Weight (kDa)

4.89

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 12 - 161 5.3e-50 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 74
AccII CGCG 1 cut(s) 8
AclWI GGATC 1 cut(s) 299
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 3 cut(s) 172, 282, 425
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 3 cut(s) 186, 322, 428
AluI AGCT 3 cut(s) 186, 322, 428
Alw26I GTCTC 3 cut(s) 32, 414, 447
AlwI GGATC 1 cut(s) 299
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 428, 480
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AspLEI GCGC 2 cut(s) 10, 336
AspS9I GGNCC 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 114
BanI GGYRCC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 415, 467
BccI CCATC 4 cut(s) 22, 68, 152, 257
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 3 cut(s) 32, 414, 447
BfmI CTRYAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 337
BglII AGATCT 1 cut(s) 52
BisI GCNGC 2 cut(s) 429, 481
BlsI GCNGC 2 cut(s) 430, 482
Bme1390I CCNGG 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 139, 245
BmrFI CCNGG 1 cut(s) 297
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 3 cut(s) 24, 68, 344
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 3 cut(s) 14, 268, 289
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 3 cut(s) 24, 68, 344
BseRI GAGGAG 2 cut(s) 20, 23
BseXI GCAGC 2 cut(s) 415, 467
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 3 cut(s) 32, 414, 447
BsmBI CGTCTC 1 cut(s) 447
BsnI GGCC 1 cut(s) 138
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 3 cut(s) 52, 93, 304
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 245
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 139, 245
BspPI GGATC 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 243
BsrI ACTGG 3 cut(s) 24, 68, 344
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 3 cut(s) 52, 93, 304
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 220, 355, 458
Bst6I CTCTTC 1 cut(s) 461
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 62, 324
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 3 cut(s) 14, 268, 289
BstFNI CGCG 1 cut(s) 8
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 2 cut(s) 10, 336
BstKTI GATC 3 cut(s) 55, 96, 307
BstMAI GTCTC 3 cut(s) 32, 414, 447
BstMBI GATC 3 cut(s) 52, 93, 304
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 216
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 415, 467
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 3 cut(s) 14, 268, 289
Cac8I GCNNGC 2 cut(s) 62, 324
CciI TCATGA 1 cut(s) 180
CfoI GCGC 2 cut(s) 10, 336
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 14
CviAII CATG 2 cut(s) 181, 393
CviJI RGCY 8 cut(s) 23, 86, 104, 138, 186, 315, 322, 428
CviKI_1 RGCY 8 cut(s) 23, 86, 104, 138, 186, 315, 322, 428
DdeI CTNAG 1 cut(s) 232
DpnI GATC 3 cut(s) 54, 95, 306
DpnII GATC 3 cut(s) 52, 93, 304
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco47III AGCGCT 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 2 cut(s) 184, 396
FaiI YATR 7 cut(s) 156, 182, 241, 351, 377, 394, 508
FatI CATG 2 cut(s) 180, 392
Fnu4HI GCNGC 2 cut(s) 429, 481
FokI GGATG 2 cut(s) 275, 276
Fsp4HI GCNGC 2 cut(s) 429, 481
GlaI GCGC 2 cut(s) 9, 335
GluI GCNGC 2 cut(s) 429, 481
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 1 cut(s) 138
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 10, 336
Hin1II CATG 2 cut(s) 184, 396
Hin6I GCGC 2 cut(s) 8, 334
HinP1I GCGC 2 cut(s) 8, 334
HinfI GANTC 3 cut(s) 78, 340, 407
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 235, 262
Hpy188III TCNNGA 3 cut(s) 127, 181, 463
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 101
HpyCH4III ACNGT 3 cut(s) 220, 355, 458
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 60, 276, 416
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 184, 396
HspAI GCGC 2 cut(s) 8, 334
Kzo9I GATC 3 cut(s) 52, 93, 304
Lsp1109I GCAGC 2 cut(s) 415, 467
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 124, 492
MalI GATC 3 cut(s) 54, 95, 306
MboI GATC 3 cut(s) 52, 93, 304
MboII GAAGA 5 cut(s) 103, 160, 278, 458, 478
MflI RGATCY 1 cut(s) 52
MluCI AATT 1 cut(s) 282
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 7 cut(s) 21, 41, 44, 94, 222, 241, 480
MslI CAYNNNNRTG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 8
NdeII GATC 3 cut(s) 52, 93, 304
NlaIII CATG 2 cut(s) 184, 396
NlaIV GGNNCC 2 cut(s) 139, 245
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 124, 492
NspV TTCGAA 1 cut(s) 114
PagI TCATGA 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 2 cut(s) 78, 340
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 2 cut(s) 430, 482
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 139, 245
PspPI GGNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 249
SatI GCNGC 2 cut(s) 429, 481
Sau3AI GATC 3 cut(s) 52, 93, 304
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 297
SetI ASST 7 cut(s) 126, 188, 227, 273, 324, 430, 478
SfcI CTRYAG 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 220, 355, 458
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 96, 114
TasI AATT 1 cut(s) 282
TfiI GAWTC 2 cut(s) 78, 340
TseFI GTSAC 2 cut(s) 124, 492
TseI GCWGC 2 cut(s) 428, 480
Tsp45I GTSAC 2 cut(s) 124, 492
TspDTI ATGAA 2 cut(s) 278, 381
Van91I CCANNNNNTGG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.