Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Forward (+)

6941537 .. 6943658

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGAAAGATTCCACCTTTAATGGGAAAGTCACTTCCTTCCTCGACCCGGCTCCAAAACTTGACCCGAATCATCGCCTCCGACAAGTTCTCGCGCCCCCGAAACGCCCGACCCAAGTCCGGGTTTCGCCGCCGCAAACCGCGAAAACGGGTAATATTCTCCGGGTCGACCCGGAGAAAGCCGGGCTGAAGATGGAGAGCTCTGAAGAGCAGAGACGGGTCCCGCTGGCCCGGGTCGTATCGGACTGCGCCAAGCGGTGGTTTCAGGACACGCTCAAGGAGGCCAAGGGCGGCGACTCCGCAATGCAGGTCTTGGTGGGCCAGATGTATCACAGTGGCTATGGTGTTCAGAAAAACCCAGAAAAGAGCTTCAAGAAGTCGAAGATCGGTTTGGAAAGTAGCGAGAAGCAACCAGGTTACCACGCAAGTGATTCCGACTCGGATGAATTGGAAGAGGATGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.25

Weight (kDa)

8.92

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	2 cut(s)	95, 143
AciI	CCGC	7 cut(s)	131, 134, 141, 224, 256, 291, 300
AcuI	CTGAAG	2 cut(s)	209, 225
AfiI	CCNNNNNNNGG	5 cut(s)	24, 49, 120, 121, 258
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	2 cut(s)	201, 369
AluI	AGCT	2 cut(s)	201, 369
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	3 cut(s)	228, 282, 319
AspLEI	GCGC	2 cut(s)	97, 251
AspS9I	GGNCC	3 cut(s)	220, 229, 319
AsuC2I	CCSGG	7 cut(s)	50, 122, 164, 173, 184, 232, 233
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	7 cut(s)	50, 122, 164, 173, 184, 232, 233
BcoDI	GTCTC	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	3 cut(s)	131, 134, 292
BlsI	GCNGC	3 cut(s)	132, 135, 293
Bme1390I	CCNGG	8 cut(s)	50, 122, 164, 173, 184, 232, 233, 414
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	3 cut(s)	220, 229, 319
BmiI	GGNNCC	3 cut(s)	54, 221, 222
BmrFI	CCNGG	8 cut(s)	50, 122, 164, 173, 184, 232, 233, 414
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	7 cut(s)	50, 122, 164, 173, 184, 232, 233
BsaJI	CCNNGG	2 cut(s)	231, 285
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 49, 120, 121, 258
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	231, 285
BseGI	GGATG	2 cut(s)	448, 463
BseLI	CCNNNNNNNGG	5 cut(s)	24, 49, 120, 121, 258
BseMI	GCAATG	1 cut(s)	309
Bsh1236I	CGCG	2 cut(s)	95, 143
BshFI	GGCC	3 cut(s)	230, 284, 321
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	6 cut(s)	50, 121, 163, 173, 183, 232
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	5 cut(s)	24, 49, 120, 121, 258
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	230, 284, 321
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	384
BspACI	CCGC	7 cut(s)	131, 134, 141, 224, 256, 291, 300
BspANI	GGCC	3 cut(s)	230, 284, 321
BspFNI	CGCG	2 cut(s)	95, 143
BspLI	GGNNCC	3 cut(s)	54, 221, 222
BspMI	ACCTGC	1 cut(s)	298
BspQI	GCTCTTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	231, 285
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	2 cut(s)	201, 447
BstC8I	GCNNGC	1 cut(s)	228
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	448, 463
BstFNI	CGCG	2 cut(s)	95, 143
BstHHI	GCGC	2 cut(s)	97, 251
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	414
BstPAI	GACNNNNGTC	1 cut(s)	116
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	8 cut(s)	48, 120, 162, 171, 182, 230, 231, 412
BstUI	CGCG	2 cut(s)	95, 143
BsuRI	GGCC	3 cut(s)	230, 284, 321
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	448, 463
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	2 cut(s)	97, 251
Cfr13I	GGNCC	3 cut(s)	220, 229, 319
Cfr9I	CCCGGG	1 cut(s)	231
CsiI	ACCWGGT	1 cut(s)	412
CviJI	RGCY	9 cut(s)	53, 182, 187, 201, 230, 284, 321, 339, 369
CviKI_1	RGCY	9 cut(s)	53, 182, 187, 201, 230, 284, 321, 339, 369
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	201, 447
EarI	CTCTTC	2 cut(s)	201, 447
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	209, 225
Eco88I	CYCGRG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	208
FaiI	YATR	1 cut(s)	342
FaqI	GGGAC	1 cut(s)	206
FauI	CCCGC	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	131, 134, 292
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	131, 134, 292
GlaI	GCGC	2 cut(s)	96, 250
GluI	GCNGC	3 cut(s)	131, 134, 292
HaeIII	GGCC	3 cut(s)	230, 284, 321
HapII	CCGG	6 cut(s)	50, 121, 163, 173, 183, 232
HhaI	GCGC	2 cut(s)	97, 251
Hin6I	GCGC	2 cut(s)	95, 249
HinP1I	GCGC	2 cut(s)	95, 249
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	5 cut(s)	11, 70, 296, 431, 437
HpaII	CCGG	6 cut(s)	50, 121, 163, 173, 183, 232
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	6 cut(s)	83, 205, 244, 351, 436, 442
Hpy188III	TCNNGA	2 cut(s)	266, 373
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	2 cut(s)	307, 461
HspAI	GCGC	2 cut(s)	95, 249
KflI	GGGWCCC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	384
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	58
LweI	GCATC	1 cut(s)	448
MabI	ACCWGGT	1 cut(s)	412
MaeIII	GTNAC	2 cut(s)	31, 416
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	4 cut(s)	202, 218, 394, 464
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	446
MlyI	GAGTC	2 cut(s)	290, 431
MmeI	TCCRAC	2 cut(s)	106, 459
MnlI	CCTC	4 cut(s)	53, 89, 274, 448
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	6 cut(s)	50, 121, 163, 173, 183, 232
MspR9I	CCNGG	8 cut(s)	50, 122, 164, 173, 184, 232, 233, 414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	2 cut(s)	95, 143
NciI	CCSGG	7 cut(s)	50, 122, 164, 173, 184, 232, 233
NdeII	GATC	1 cut(s)	384
NlaIV	GGNNCC	3 cut(s)	54, 221, 222
NmuCI	GTSAC	1 cut(s)	31
OliI	CACNNNNGTG	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	11, 70, 431
PflMI	CCANNNNNTGG	1 cut(s)	258
PkrI	GCNGC	3 cut(s)	132, 135, 293
PleI	GAGTC	2 cut(s)	290, 431
PpsI	GAGTC	2 cut(s)	290, 431
PpuMI	RGGWCCY	1 cut(s)	220
PshAI	GACNNNNGTC	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	412
PspEI	GGTNACC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	54, 221, 222
PspPI	GGNCC	3 cut(s)	220, 229, 319
PspPPI	RGGWCCY	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	203
SalI	GTCGAC	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	3 cut(s)	131, 134, 292
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	3 cut(s)	220, 229, 319
SchI	GAGTC	2 cut(s)	290, 431
ScrFI	CCNGG	8 cut(s)	50, 122, 164, 173, 184, 232, 233, 414
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	5 cut(s)	20, 203, 312, 371, 418
SexAI	ACCWGGT	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	220
SmaI	CCCGGG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	446
SsiI	CCGC	7 cut(s)	131, 134, 141, 224, 256, 291, 300
SspI	AATATT	1 cut(s)	157
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	8 cut(s)	48, 120, 162, 171, 182, 230, 231, 412
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	45, 168, 380
TasI	AATT	1 cut(s)	446
TauI	GCSGC	3 cut(s)	133, 136, 294
TfiI	GAWTC	3 cut(s)	11, 70, 431
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	459
TspMI	CCCGGG	1 cut(s)	231
TspRI	CASTG	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.