Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

19385166 .. 19385880

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGTCTGAAAGCAGCTCAGTGAACGCGAACAGCAGCAGCAACGAACACCGCGTGCCGCTCTCCGCCGTCGTGTCGGACTGCATAAAGCGGTGGTTCAAGGACACGCTTAAGGAGGCCAAAGCCGGCGATATTAACATGCAGGTTTTGGTGGGCCAGATGTATTACAACGGCTATGGCGTCGCCAGAGATGCCCACATGGGAAGAGTATGGATTACAAGAGCGTCGAGGACGCGATCTTCAGCTTGGAAAGTTGGTGATAAGCAGCCCGGTTATAATGCAAGTGATTCAGATTCAGATGAACTGAAGTGTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.74

Weight (kDa)

6.72

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	61
AccII	CGCG	3 cut(s)	29, 54, 235
AciI	CCGC	4 cut(s)	52, 59, 66, 91
AcuI	CTGAAG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	55
AflII	CTTAAG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	2 cut(s)	18, 245
AluI	AGCT	2 cut(s)	18, 245
AoxI	GGCC	2 cut(s)	117, 154
ApeKI	GCWGC	4 cut(s)	15, 36, 39, 265
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	269
BbvI	GCAGC	4 cut(s)	27, 48, 51, 277
BceAI	ACGGC	2 cut(s)	53, 187
BcnI	CCSGG	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	110
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	5 cut(s)	16, 37, 40, 59, 266
BlsI	GCNGC	5 cut(s)	17, 38, 41, 60, 267
Bme1390I	CCNGG	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	27, 48, 51, 277
Bsh1236I	CGCG	3 cut(s)	29, 54, 235
BshFI	GGCC	2 cut(s)	119, 156
BsiSI	CCGG	2 cut(s)	126, 270
BsnI	GGCC	2 cut(s)	119, 156
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	4 cut(s)	52, 59, 66, 91
BspANI	GGCC	2 cut(s)	119, 156
BspCNI	CTCAG	1 cut(s)	32
BspFNI	CGCG	3 cut(s)	29, 54, 235
BspMI	ACCTGC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	56, 127
BstDEI	CTNAG	2 cut(s)	19, 318
BstFNI	CGCG	3 cut(s)	29, 54, 235
BstKTI	GATC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	268
BstUI	CGCG	3 cut(s)	29, 54, 235
BstV1I	GCAGC	4 cut(s)	27, 48, 51, 277
BsuRI	GGCC	2 cut(s)	119, 156
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	56, 127
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	3 cut(s)	169, 213, 241
CviAII	CATG	2 cut(s)	139, 199
CviJI	RGCY	7 cut(s)	18, 119, 125, 156, 174, 245, 268
CviKI_1	RGCY	7 cut(s)	18, 119, 125, 156, 174, 245, 268
DdeI	CTNAG	2 cut(s)	19, 318
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
DraIII	CACNNNGTG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	225
FaeI	CATG	2 cut(s)	142, 202
FaiI	YATR	6 cut(s)	86, 140, 177, 200, 211, 276
FatI	CATG	2 cut(s)	138, 198
Fnu4HI	GCNGC	5 cut(s)	16, 37, 40, 59, 266
Fsp4HI	GCNGC	5 cut(s)	16, 37, 40, 59, 266
GluI	GCNGC	5 cut(s)	16, 37, 40, 59, 266
HaeIII	GGCC	2 cut(s)	119, 156
HapII	CCGG	2 cut(s)	126, 270
HgaI	GACGC	3 cut(s)	169, 213, 241
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	142, 202
HinfI	GANTC	4 cut(s)	5, 287, 293, 314
HpaII	CCGG	2 cut(s)	126, 270
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	10, 79, 292, 298
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	3 cut(s)	74, 185, 229
HpyCH4V	TGCA	3 cut(s)	84, 142, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	19, 318
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	142, 202
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	128, 139, 170, 199, 283
Lsp1109I	GCAGC	4 cut(s)	27, 48, 51, 277
LweI	GCATC	1 cut(s)	181
MalI	GATC	1 cut(s)	238
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	216, 231
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	109, 222
MroNI	GCCGGC	1 cut(s)	125
MseI	TTAA	2 cut(s)	111, 135
MspCI	CTTAAG	1 cut(s)	110
MspI	CCGG	2 cut(s)	126, 270
MspR9I	CCNGG	1 cut(s)	270
MvnI	CGCG	3 cut(s)	29, 54, 235
MwoI	GCNNNNNNNGC	1 cut(s)	191
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	236
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	142, 202
NspI	RCATGY	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 177
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	287, 293, 314
PkrI	GCNGC	5 cut(s)	17, 38, 41, 60, 267
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	154
SaqAI	TTAA	2 cut(s)	111, 135
SatI	GCNGC	5 cut(s)	16, 37, 40, 59, 266
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	3 cut(s)	20, 147, 247
SfaNI	GCATC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	4 cut(s)	52, 59, 66, 91
StyD4I	CCNGG	1 cut(s)	268
TaqI	TCGA	1 cut(s)	227
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	287, 293, 314
Tru1I	TTAA	2 cut(s)	111, 135
Tru9I	TTAA	2 cut(s)	111, 135
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	4 cut(s)	15, 36, 39, 265
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	110
XceI	RCATGY	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.