Rorug03G0047800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003369
Physical Location & Seq
Forward (+)
3714367 .. 3731935
17569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0047800.1

Sequence Viewer

Length: 1815 bp
ATGGGAGGGTGTTTTTCCGACGTGAAAGGTGGCAAGCAGGCCGTGGGAGGTGGTGGGGCCCATCATCTTCAACAGAGGCCCATCAACAGGGACGCTGACACAAACGACGCCGTTGAGCTCTTTAACCGCTCCCGTGGCGTTTTTCCACTCTACACTCCGCTTGAGTTATCGCTGTCAGCCACTAACTTGCTTGATCGTGATATTATGTCAAAGAGTGATCCCATGGTTGTGGTTTATGTGAAGAAAGGAGATGGTAAGCTAGAGGAACTAGGGAGAACTGAAGTAATACTGAATAGTTTGAATCCAGCGTGGATTGAGAAAATTACAGTTTCATATCAGTTTGAGGTTGTGCAGCCATTGATATTCCATGTCTATGATGTCGATACAAAATATCACAATGTAAATGTAAAGACACTGAAGTTGGAGGATCAAGAATTTCTTGGGGAAGGCAGTTGTGTTCTTTCAGAGATAGTGACCAAACAAAGTCGAAGTTTAACCTTGAATCTGCATAGCAGAAGTGGGCGTGGAGGTTTGAGAAACTTCGGAACACTCACTGTCCATGCTGAAGAAACTATGGCTTCAAAGAGTGTTGTTGAGATAAAATTCCGTTGTTCCCAATTGGAAAACAAAGACCTCTTCTCTAAAAGTGATCCTTTCTTAAGAGTATCTAGAATTGTTGAGAATGGAAGTTCTGTTCCAATTTGCAAGACTGAAGTGGTAGATAACAATTTAAATCCAATCTGGAAACCACTATCCCTGAGTATGCAGCAGTTTGGAAGCAAGGATAATCCATTAGTCATCGAGTGCTTTGATTTCAACAGCAATGGCAATCATGTTCTTATTGGGAAACTTCAAAAGTCAGTGGCAGACCTGGAGAGATTATACCAAGAAAAAAGTGGGGTGAATTTCGTCATTCCATCTTCTCATGGTCATGAAAAGGTTTCAAAGGGTCAGTTGTTTGTGGATCAATTTAATGAGAAGCAACAGTTCAGCTTTCTCGATTATATTTCCAGTGGATTTGAACTTAACTTCATGGTTGCTATTGACTTTACGGGTTCAAATGGAAACCCTCAACAACATGATTCGTTGCACTACATTGATCCGTATGGGCGGTTGAACTCTTACCAGCAGGCAATAATGGAAGTTGGGGAAGTCATTCAGTTTTATGATGCTGATAAACGCTTTCCTGCTTGGGGCTTTGGAGGAAGGACAGCTGAAGGACCTGTATCGCACTGTTTTAACTTGGATGGAACTGCAACTGGCTTTGAGGTTGAAGGAGTTCAAGGCATAATGACTGCTTATGCCAGTGCTCTACACAATGTTTCTCTATCAGGACCCACTTTGTTTGGCCCAGTGGTTAATAGGGCTGCAGAGATTGCTGGCAATTCTCTATTCCACAACAACAATAAGTACTATGTATTGCTGATCATAACGGATGGGATACTTACAGACCTACAAGAAACAACAGATGCTTTGGTGAGGGCATCTGATCTTCCCTTCTCAGTTCTAATAGTTGGAGTAGGAAGTGCAGATTTCAAACAAATGGAGATTCTCGATGCTGACAATGGACAGCAATTATCGAGTTCAACAGGTCGTGTGGCTACCAGAGACATTGTACAGTTTGTTCCTATGAGAGAAGTGCAGAGTGGGCGCATTTCCACGGTTCAATCGCTTCTCGAAGAGCTGCCTGGACAGTTCTTGAGTTACATGCGCTGCAGAGACATCATGCCTCTCACTGTCCATGCAGCCCAATCATCTGCTCCACAGGACCACAACTTTAGAACGGCACAAGCACAGCATCGTGAAGTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

604

Amino Acids

66.91

Weight (kDa)

5.55

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 58 - 164 6.6e-13 C2 domain
C2 PF00168 203 - 292 6.7e-13 C2 domain
Copine PF07002 362 - 576 5.8e-77 Copine
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AciI CCGC 3 cut(s) 127, 158, 1111
AclWI GGATC 5 cut(s) 212, 435, 644, 972, 1094
AcsI RAATTY 3 cut(s) 434, 602, 904
AcuI CTGAAG 5 cut(s) 300, 437, 585, 732, 1236
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 1412, 1617
AfiI CCNNNNNNNGG 2 cut(s) 87, 1193
AflII CTTAAG 1 cut(s) 658
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 2 cut(s) 870, 1687
AloI GAACNNNNNNTCC 2 cut(s) 678, 710
AluBI AGCT 5 cut(s) 118, 259, 993, 1214, 1684
AluI AGCT 5 cut(s) 118, 259, 993, 1214, 1684
Alw21I GWGCWC 2 cut(s) 120, 1312
Alw26I GTCTC 2 cut(s) 1602, 1713
AlwI GGATC 5 cut(s) 212, 435, 644, 972, 1094
AoxI GGCC 4 cut(s) 39, 57, 77, 1348
ApaI GGGCCC 1 cut(s) 61
ApeKI GCWGC 6 cut(s) 352, 766, 1367, 1684, 1713, 1745
ApoI RAATTY 3 cut(s) 434, 602, 904
Asp700I GAANNNNTTC 2 cut(s) 1155, 1278
AspLEI GCGC 2 cut(s) 1653, 1713
AspS9I GGNCC 7 cut(s) 57, 58, 78, 1220, 1334, 1349, 1768
AsuHPI GGTGA 2 cut(s) 913, 1489
AvaII GGWCC 3 cut(s) 1220, 1334, 1768
BaeGI GKGCMC 1 cut(s) 61
BanII GRGCYC 2 cut(s) 61, 120
Bbv12I GWGCWC 2 cut(s) 120, 1312
BbvI GCAGC 6 cut(s) 364, 778, 1354, 1671, 1700, 1757
BccI CCATC 6 cut(s) 69, 89, 245, 925, 1241, 1430
BceAI ACGGC 3 cut(s) 26, 95, 1800
BciT130I CCWGG 2 cut(s) 872, 1689
BciVI GTATCC 1 cut(s) 1434
BclI TGATCA 1 cut(s) 1425
BcoDI GTCTC 2 cut(s) 1602, 1713
BfaI CTAG 3 cut(s) 260, 269, 669
BfmI CTRYAG 2 cut(s) 1368, 1714
BfrI CTTAAG 1 cut(s) 658
BfuI GTATCC 1 cut(s) 1434
BisI GCNGC 6 cut(s) 353, 767, 1368, 1685, 1714, 1746
BlsI GCNGC 6 cut(s) 354, 768, 1369, 1686, 1715, 1747
BmcAI AGTACT 1 cut(s) 1412
Bme1390I CCNGG 2 cut(s) 872, 1689
Bme18I GGWCC 3 cut(s) 1220, 1334, 1768
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 7 cut(s) 57, 58, 78, 1220, 1334, 1349, 1768
BmiI GGNNCC 3 cut(s) 58, 59, 1336
BmrFI CCNGG 2 cut(s) 872, 1689
BmrI ACTGGG 1 cut(s) 1346
BmsI GCATC 5 cut(s) 1159, 1459, 1493, 1546, 1807
BmuI ACTGGG 1 cut(s) 1346
BpmI CTGGAG 1 cut(s) 893
BpuEI CTTGAG 2 cut(s) 182, 1720
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 42, 133, 222, 1659
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 1193
Bse1I ACTGG 4 cut(s) 1011, 1264, 1305, 1352
Bse3DI GCAATG 1 cut(s) 829
BseBI CCWGG 2 cut(s) 872, 1689
BseDI CCNNGG 4 cut(s) 42, 133, 222, 1659
BseGI GGATG 2 cut(s) 1252, 1441
BseLI CCNNNNNNNGG 2 cut(s) 87, 1193
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 2 cut(s) 749, 1515
BseNI ACTGG 4 cut(s) 1011, 1264, 1305, 1352
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 6 cut(s) 364, 778, 1354, 1671, 1700, 1757
BsgI GTGCAG 3 cut(s) 371, 1548, 1661
BshFI GGCC 4 cut(s) 41, 59, 79, 1350
BsiHKAI GWGCWC 2 cut(s) 120, 1312
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 87, 1193
BsmAI GTCTC 2 cut(s) 1602, 1713
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 4 cut(s) 41, 59, 79, 1350
Bsp120I GGGCCC 1 cut(s) 57
Bsp1286I GDGCHC 3 cut(s) 61, 120, 1312
Bsp1407I TGTACA 1 cut(s) 1615
Bsp143I GATC 8 cut(s) 193, 217, 427, 649, 964, 1099, 1425, 1489
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 3 cut(s) 127, 158, 1111
BspANI GGCC 4 cut(s) 41, 59, 79, 1350
BspCNI CTCAG 2 cut(s) 750, 1514
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 3 cut(s) 58, 59, 1336
BspMAI CTGCAG 2 cut(s) 1372, 1718
BspPI GGATC 5 cut(s) 212, 435, 644, 972, 1094
BspQI GCTCTTC 1 cut(s) 1674
BspTI CTTAAG 1 cut(s) 658
BsrBI CCGCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 829
BsrGI TGTACA 1 cut(s) 1615
BsrI ACTGG 4 cut(s) 1011, 1264, 1305, 1352
BssECI CCNNGG 4 cut(s) 42, 133, 222, 1659
BssMI GATC 8 cut(s) 193, 217, 427, 649, 964, 1099, 1425, 1489
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 872, 1689
Bst4CI ACNGT 8 cut(s) 328, 556, 987, 1235, 1620, 1663, 1695, 1738
Bst6I CTCTTC 2 cut(s) 641, 1674
BstACI GRCGYC 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 658
BstAPI GCANNNNNTGC 1 cut(s) 1376
BstAUI TGTACA 1 cut(s) 1615
BstC8I GCNNGC 4 cut(s) 35, 39, 1131, 1381
BstDEI CTNAG 2 cut(s) 758, 1501
BstDSI CCRYGG 4 cut(s) 42, 133, 222, 1659
BstF5I GGATG 2 cut(s) 1252, 1441
BstHHI GCGC 2 cut(s) 1653, 1713
BstKTI GATC 8 cut(s) 196, 220, 430, 652, 967, 1102, 1428, 1492
BstMAI GTCTC 2 cut(s) 1602, 1713
BstMBI GATC 8 cut(s) 193, 217, 427, 649, 964, 1099, 1425, 1489
BstMWI GCNNNNNNNGC 3 cut(s) 135, 1376, 1648
BstNI CCWGG 2 cut(s) 872, 1689
BstNSI RCATGY 1 cut(s) 1711
BstSCI CCNGG 2 cut(s) 870, 1687
BstSFI CTRYAG 2 cut(s) 1368, 1714
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 6 cut(s) 364, 778, 1354, 1671, 1700, 1757
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 1434
BsuRI GGCC 4 cut(s) 41, 59, 79, 1350
BtgI CCRYGG 4 cut(s) 42, 133, 222, 1659
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 2 cut(s) 1252, 1441
BtsIMutI CAGTG 8 cut(s) 413, 552, 867, 1018, 1231, 1312, 1359, 1734
Cac8I GCNNGC 4 cut(s) 35, 39, 1131, 1381
CciI TCATGA 1 cut(s) 931
CfoI GCGC 2 cut(s) 1653, 1713
Cfr13I GGNCC 7 cut(s) 57, 58, 78, 1220, 1334, 1349, 1768
CseI GACGC 2 cut(s) 101, 116
Csp6I GTAC 2 cut(s) 1411, 1616
CspCI CAANNNNNGTGG 2 cut(s) 1327, 1362
CviQI GTAC 2 cut(s) 1411, 1616
DdeI CTNAG 2 cut(s) 758, 1501
DpnI GATC 8 cut(s) 195, 219, 429, 651, 966, 1101, 1427, 1491
DpnII GATC 8 cut(s) 193, 217, 427, 649, 964, 1099, 1425, 1489
DraI TTTAAA 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 641, 1674
EarI CTCTTC 2 cut(s) 641, 1674
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 2 cut(s) 61, 120
Eco47I GGWCC 3 cut(s) 1220, 1334, 1768
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 5 cut(s) 300, 437, 585, 732, 1236
EcoICRI GAGCTC 1 cut(s) 118
EcoO109I RGGNCCY 3 cut(s) 57, 1220, 1334
EcoRII CCWGG 2 cut(s) 870, 1687
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 61, 120
ErhI CCWWGG 1 cut(s) 222
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 637, 669
FaqI GGGAC 1 cut(s) 104
FbaI TGATCA 1 cut(s) 1425
Fnu4HI GCNGC 6 cut(s) 353, 767, 1368, 1685, 1714, 1746
FokI GGATG 2 cut(s) 1259, 1448
FriOI GRGCYC 2 cut(s) 61, 120
Fsp4HI GCNGC 6 cut(s) 353, 767, 1368, 1685, 1714, 1746
FspBI CTAG 3 cut(s) 260, 269, 669
GlaI GCGC 2 cut(s) 1652, 1712
GluI GCNGC 6 cut(s) 353, 767, 1368, 1685, 1714, 1746
GsuI CTGGAG 1 cut(s) 893
HaeIII GGCC 4 cut(s) 41, 59, 79, 1350
HgaI GACGC 2 cut(s) 101, 116
HhaI GCGC 2 cut(s) 1653, 1713
Hin1I GRCGYC 1 cut(s) 108
Hin6I GCGC 2 cut(s) 1651, 1711
HinP1I GCGC 2 cut(s) 1651, 1711
HinfI GANTC 4 cut(s) 301, 502, 1082, 1549
HphI GGTGA 2 cut(s) 913, 1489
Hpy188I TCNGA 4 cut(s) 19, 466, 545, 1489
Hpy99I CGWCG 2 cut(s) 23, 110
HpyAV CCTTC 5 cut(s) 440, 1200, 1211, 1268, 1507
HpyCH4III ACNGT 8 cut(s) 328, 556, 987, 1235, 1620, 1663, 1695, 1738
HpyCH4IV ACGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 1376, 1648
HpyF3I CTNAG 2 cut(s) 758, 1501
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 108
HspAI GCGC 2 cut(s) 1651, 1711
Ksp22I TGATCA 1 cut(s) 1425
Kzo9I GATC 8 cut(s) 193, 217, 427, 649, 964, 1099, 1425, 1489
LguI GCTCTTC 1 cut(s) 1674
LmnI GCTCC 2 cut(s) 134, 1765
Lsp1109I GCAGC 6 cut(s) 364, 778, 1354, 1671, 1700, 1757
LweI GCATC 5 cut(s) 1159, 1459, 1493, 1546, 1807
MaeI CTAG 3 cut(s) 260, 269, 669
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 472, 1703
MalI GATC 8 cut(s) 195, 219, 429, 651, 966, 1101, 1427, 1491
MbiI CCGCTC 1 cut(s) 129
MboI GATC 8 cut(s) 193, 217, 427, 649, 964, 1099, 1425, 1489
MboII GAAGA 7 cut(s) 59, 253, 578, 628, 912, 1484, 1691
MfeI CAATTG 1 cut(s) 617
MhlI GDGCHC 3 cut(s) 61, 120, 1312
MmeI TCCRAC 3 cut(s) 42, 402, 1495
MroXI GAANNNNTTC 2 cut(s) 1155, 1278
MseI TTAA 8 cut(s) 123, 494, 659, 731, 972, 1026, 1239, 1359
MslI CAYNNNNRTG 3 cut(s) 227, 372, 930
MspA1I CMGCKG 1 cut(s) 1214
MspCI CTTAAG 1 cut(s) 658
MspR9I CCNGG 2 cut(s) 872, 1689
MunI CAATTG 1 cut(s) 617
MvaI CCWGG 2 cut(s) 872, 1689
MwoI GCNNNNNNNGC 3 cut(s) 135, 1376, 1648
NcoI CCATGG 1 cut(s) 222
NdeII GATC 8 cut(s) 193, 217, 427, 649, 964, 1099, 1425, 1489
NlaIV GGNNCC 3 cut(s) 58, 59, 1336
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 1711
PagI TCATGA 1 cut(s) 931
PciSI GCTCTTC 1 cut(s) 1674
PdmI GAANNNNTTC 2 cut(s) 1155, 1278
PfeI GAWTC 4 cut(s) 301, 502, 1082, 1549
PkrI GCNGC 6 cut(s) 354, 768, 1369, 1686, 1715, 1747
PpuMI RGGWCCY 2 cut(s) 1220, 1334
Psp124BI GAGCTC 1 cut(s) 120
Psp5II RGGWCCY 2 cut(s) 1220, 1334
Psp6I CCWGG 2 cut(s) 870, 1687
PspGI CCWGG 2 cut(s) 870, 1687
PspN4I GGNNCC 3 cut(s) 58, 59, 1336
PspOMI GGGCCC 1 cut(s) 57
PspPI GGNCC 7 cut(s) 57, 58, 78, 1220, 1334, 1349, 1768
PspPPI RGGWCCY 2 cut(s) 1220, 1334
PsrI GAACNNNNNNTAC 2 cut(s) 1608, 1640
PstI CTGCAG 2 cut(s) 1372, 1718
PvuII CAGCTG 1 cut(s) 1214
RsaI GTAC 2 cut(s) 1412, 1617
RsaNI GTAC 2 cut(s) 1411, 1616
RseI CAYNNNNRTG 3 cut(s) 227, 372, 930
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 1674
SaqAI TTAA 8 cut(s) 123, 494, 659, 731, 972, 1026, 1239, 1359
SatI GCNGC 6 cut(s) 353, 767, 1368, 1685, 1714, 1746
Sau3AI GATC 8 cut(s) 193, 217, 427, 649, 964, 1099, 1425, 1489
Sau96I GGNCC 7 cut(s) 57, 58, 78, 1220, 1334, 1349, 1768
ScaI AGTACT 1 cut(s) 1412
ScrFI CCNGG 2 cut(s) 872, 1689
SduI GDGCHC 3 cut(s) 61, 120, 1312
SfaNI GCATC 5 cut(s) 1159, 1459, 1493, 1546, 1807
SfcI CTRYAG 2 cut(s) 1368, 1714
SinI GGWCC 3 cut(s) 1220, 1334, 1768
SmiI ATTTAAAT 1 cut(s) 732
SmiMI CAYNNNNRTG 3 cut(s) 227, 372, 930
SmlI CTYRAG 3 cut(s) 161, 658, 1699
SmoI CTYRAG 3 cut(s) 161, 658, 1699
SsiI CCGC 3 cut(s) 127, 158, 1111
SspMI CTAG 3 cut(s) 260, 269, 669
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 870, 1687
StyI CCWWGG 1 cut(s) 222
SwaI ATTTAAAT 1 cut(s) 732
TaaI ACNGT 8 cut(s) 328, 556, 987, 1235, 1620, 1663, 1695, 1738
TaiI ACGT 1 cut(s) 24
TaqI TCGA 7 cut(s) 381, 487, 801, 999, 1554, 1580, 1677
TatI WGTACW 2 cut(s) 1410, 1615
TfiI GAWTC 4 cut(s) 301, 502, 1082, 1549
Tru1I TTAA 8 cut(s) 123, 494, 659, 731, 972, 1026, 1239, 1359
Tru9I TTAA 8 cut(s) 123, 494, 659, 731, 972, 1026, 1239, 1359
TscAI CASTG 8 cut(s) 420, 559, 867, 1018, 1238, 1312, 1359, 1741
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 6 cut(s) 352, 766, 1367, 1684, 1713, 1745
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 321, 948, 1021
TspGWI ACGGA 3 cut(s) 596, 1092, 1448
TspRI CASTG 8 cut(s) 420, 559, 867, 1018, 1238, 1312, 1359, 1741
Vha464I CTTAAG 1 cut(s) 658
VpaK11BI GGWCC 3 cut(s) 1220, 1334, 1768
XapI RAATTY 3 cut(s) 434, 602, 904
XbaI TCTAGA 1 cut(s) 668
XceI RCATGY 1 cut(s) 1711
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XmnI GAANNNNTTC 2 cut(s) 1155, 1278
XspI CTAG 3 cut(s) 260, 269, 669
ZrmI AGTACT 1 cut(s) 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.