Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003369

Physical Location & Seq

Genomic Coordinates Reverse (-)

26945839 .. 26947942

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G258800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGAAAGGCACTTCCTACAGCGACCAGATTCCAAGAGTTCACCAGAGTTGTCTCTGCGGACAAGCTCCCAGGCAGGCCCAGACGCACCAAGCAAGTCTCGCAAGTCCGAATTTCGCCCCCACAAGCACCCAAATCGGAGAGCTTTCGGGTCGACCCGGAGCGAATTAAGCTGAAGATGGAGAGCTCCGAGGGCCAGAGCCGGGTTCCGCTGGCCCGGGTGGTCTCAGACTGCGTGAAACGGTGGTTCCAGGACACGCTCAAGGAGGCCAAGGCGGGTGATAGCTCCATGCAGGTCTTGGTGGGTCAGATGTATTACAGCGGCTATGGCGTTTCTAGAGACGCCAAAAAGGGGCAGGCTTGGATGAATAGAGCTTCGAAAAGTCGAACTTCGGTTTGGAAAGTGAGTAATAAACCTCCAGGTTATAACGCAAGTGATTCAAACTCGGATGAATTGGAAGAGGATGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.59

Weight (kDa)

9.95

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38450 AT2G38450
fragaria_vesca	FvH4_6g10270 FvH4_7g25430
malus_domestica	MD04G1168100.v1.1 MD07G1228700.v1.1 MD12G1181500.v1.1
prunus_persica	Prupe.2G258800_v2.0.a1 Prupe.2G258800_v2.0.a1 Prupe.6G286300_v2.0.a1 Prupe.6G286300_v2.0.a1
pyrus_communis	pycom04g14910 pycom12g17090
rosa_chinensis	RchiOBHm_Chr1g0371401 RchiOBHm_Chr1g0371721 RchiOBHm_Chr3g0461011
rosa_laevigata	RLG00000026966
rosa_multiflora	Rmu_sc0000809.1_g000025 Rmu_sc0029638.1_g000002 Rmu_ssc0000090.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285720 Rroxscaffold_6G00418940
rosa_rugosa	Rorug01G0363700 Rorug03G0047800
rosa_samantha	Rh1AG373800 Rh1AG375800 Rh1BG337200 Rh1BG339200 Rh1CG350500 Rh1DG368200 Rh1DG370300 Rh3BG109100 Rh3CG110700 Rh3DG110800
rosa_wichuraiana	Rw1G032880 Rw3G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	283
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	4 cut(s)	59, 209, 275, 321
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	202, 351
AgsI	TTSAA	1 cut(s)	441
AjnI	CCWGG	3 cut(s)	70, 249, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	6 cut(s)	67, 144, 172, 186, 285, 374
AluI	AGCT	6 cut(s)	67, 144, 172, 186, 285, 374
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	4 cut(s)	58, 103, 229, 333
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	4 cut(s)	77, 193, 213, 267
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	78, 193, 214
AsuC2I	CCSGG	4 cut(s)	158, 203, 217, 218
AsuHPI	GGTGA	2 cut(s)	34, 290
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciT130I	CCWGG	3 cut(s)	72, 251, 420
BcnI	CCSGG	4 cut(s)	158, 203, 217, 218
BcoDI	GTCTC	4 cut(s)	58, 103, 229, 333
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	7 cut(s)	72, 158, 203, 217, 218, 251, 420
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	3 cut(s)	78, 193, 214
BmiI	GGNNCC	2 cut(s)	207, 248
BmrFI	CCNGG	7 cut(s)	72, 158, 203, 217, 218, 251, 420
BmsI	GCATC	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	4 cut(s)	158, 203, 217, 218
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	4 cut(s)	70, 189, 216, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 351
BseBI	CCWGG	3 cut(s)	72, 251, 420
BseDI	CCNNGG	4 cut(s)	70, 189, 216, 270
BseGI	GGATG	3 cut(s)	369, 454, 469
BseLI	CCNNNNNNNGG	2 cut(s)	202, 351
BseMII	CTCAG	1 cut(s)	240
BshFI	GGCC	4 cut(s)	79, 195, 215, 269
BsiHKAI	GWGCWC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	158, 202, 217
BslI	CCNNNNNNNGG	2 cut(s)	202, 351
BsmAI	GTCTC	4 cut(s)	58, 103, 229, 333
BsmBI	CGTCTC	1 cut(s)	333
BsnI	GGCC	4 cut(s)	79, 195, 215, 269
Bso31I	GGTCTC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	216
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	188
BspACI	CCGC	4 cut(s)	59, 209, 275, 321
BspANI	GGCC	4 cut(s)	79, 195, 215, 269
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	207, 248
BspMI	ACCTGC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	229
BssECI	CCNNGG	4 cut(s)	70, 189, 216, 270
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	3 cut(s)	72, 251, 420
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	77, 213, 357
BstDEI	CTNAG	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	369, 454, 469
BstMAI	GTCTC	4 cut(s)	58, 103, 229, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 169, 192, 327
BstNI	CCWGG	3 cut(s)	72, 251, 420
BstSCI	CCNGG	7 cut(s)	70, 156, 201, 215, 216, 249, 418
BstSFI	CTRYAG	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	79, 195, 215, 269
BtsCI	GGATG	3 cut(s)	369, 454, 469
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	77, 213, 357
Cfr13I	GGNCC	3 cut(s)	78, 193, 214
Cfr9I	CCCGGG	1 cut(s)	216
CseI	GACGC	2 cut(s)	93, 350
CviAII	CATG	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	186
EcoRII	CCWGG	3 cut(s)	70, 249, 418
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	1 cut(s)	292
FaiI	YATR	3 cut(s)	290, 327, 426
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FatI	CATG	1 cut(s)	288
FauI	CCCGC	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	2 cut(s)	376, 461
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	1 cut(s)	322
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	4 cut(s)	79, 195, 215, 269
HapII	CCGG	3 cut(s)	158, 202, 217
HgaI	GACGC	2 cut(s)	93, 350
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	30, 437
HpaII	CCGG	3 cut(s)	158, 202, 217
HphI	GGTGA	2 cut(s)	34, 290
Hpy166II	GTNNAC	2 cut(s)	42, 154
Hpy188I	TCNGA	6 cut(s)	110, 139, 190, 229, 309, 448
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	2 cut(s)	42, 154
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	292, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 169, 192, 327
HpyF3I	CTNAG	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	292
LmnI	GCTCC	4 cut(s)	72, 160, 191, 290
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	336
MboII	GAAGA	2 cut(s)	187, 470
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	3 cut(s)	111, 165, 452
MnlI	CCTC	4 cut(s)	184, 259, 426, 454
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	2 cut(s)	211, 321
MspI	CCGG	3 cut(s)	158, 202, 217
MspR9I	CCNGG	7 cut(s)	72, 158, 203, 217, 218, 251, 420
MvaI	CCWGG	3 cut(s)	72, 251, 420
MwoI	GCNNNNNNNGC	4 cut(s)	100, 169, 192, 327
NciI	CCSGG	4 cut(s)	158, 203, 217, 218
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	207, 248
NspV	TTCGAA	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	30, 437
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	323
PsiI	TTATAA	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	3 cut(s)	70, 249, 418
PspGI	CCWGG	3 cut(s)	70, 249, 418
PspN4I	GGNNCC	2 cut(s)	207, 248
PspPI	GGNCC	3 cut(s)	78, 193, 214
SacI	GAGCTC	1 cut(s)	188
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	322
Sau96I	GGNCC	3 cut(s)	78, 193, 214
ScrFI	CCNGG	7 cut(s)	72, 158, 203, 217, 218, 251, 420
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	9 cut(s)	69, 146, 174, 188, 287, 297, 376, 418, 424
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	1 cut(s)	18
SfuI	TTCGAA	1 cut(s)	377
SmaI	CCCGGG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	111, 165, 452
SsiI	CCGC	4 cut(s)	59, 209, 275, 321
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	7 cut(s)	70, 156, 201, 215, 216, 249, 418
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	153, 377, 385
TasI	AATT	3 cut(s)	111, 165, 452
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	2 cut(s)	30, 437
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	380, 465
TspMI	CCCGGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	111
XbaI	TCTAGA	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.