AT2G38800

Plant calmodulin-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003606
Physical Location & Seq
Forward (+)
16216752 .. 16219159
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38800.1

Sequence Viewer

Length: 1839 bp
ATGGTTCAGAGGAAGAAGACTTGTCTAACAATCGAGTCTTCTTCCAATCTCCAACCTGAAACTCGGTTTGGGCAAGAACATCTCAAGAATCTTGGACCAGAGATGATGATGATGAAGAGAACTAAACCTAGGAGGAAGCTTAAAGACAATCATGTTTCTTCTCAATCAGGTAAGTCACAAGAACTACCAAAGCATGACCTTGTTGTTAAAGTGATAGGTGGTTCACCTAATTACATGAAAGGCACCAGTAGTTCTGAGGCAAGGAAGGAGAACAAGAAAAAATTTAATCTTTCTAGGAATCAGAAGAACCAAACCGGTTCAAAACATGATTCTCGTTATGGAGTTAACAAGGAAAGAAGTTGTAACAAGTCGAGTTCGAGGAACGGTAGAGGTTTGACAAAGGCTCCGATTTTCAAGAGATGTTCACAGAGAGCTACTTGTTCTTCAACTCTAAAAGATTCCAAGTTTCCAGAGTATTTGATGCTTAACCATGGCGAGACTTTTGACCAAGTTAATGGAACCTCTGTCTTGAAAGTCTGTCCTTACACGTATTGTTCACTCAACGGTCATCTTCATGCAGCGCAGTATCCTCCTCTGAAAAGCTTCATATCGTTGAGGAGACAGAGTTTGAAGTCACAAAAGAGTGTGAAAATGGAAGCTTCTGAGGAAGAGTTTGTGAAGATGGATGATCTAGAGGAGAAGAAAGAGTTTGAGAATGGTAATGGAGGTTCTTGTGAGGTTGATATTGATAGTCAAATATCGGAAACTGTTTCTGAAGGAGCACCTCGTTCTGAAACTGATTCTGATGATTACTCTGATAGTGCTGAGATGGTGATTGAGTTAAAAGAATCTTGTTTGGAGGAGACTTTGGTGGATGACTCTGAGAATGAGGTCCAAGAGAAAGCAAACAGAGATGGAGATACCTACCTATTAAAAGAATCTGACTTGGAGGAGACTTTGGTTGAGGATTCTATGAATCAAGATGAAGGAAACAGAGATGGAGATGCTGATCACTCTGGTTGCTTTGATTCTGAAGTTATTGGTATAATCAAGAACTCAGAAGCAGATATTGTTATTGATGAGACTTTGATAGATGACTCTGTGAAAGATTTCGAAGATACAACAAACATATATGGGGATGCTAATGAATTTGGTTGCTTTAATTCTGAAGTTATCGATATGATGAAGAACACAGAAGCAGATACTGCAATCGGGGAGACTTTGGTAGATGAGTCTATGAAAGAGATCCAGGAGAAAGAAAACAAAGATGAAGATGCTGATGAATCTAGTTGCTTTGTTTCAGAACTTATCGATATGATAAAGAACTCAGCTGCAAGTGATGCTATTGAGGATAAAGATGCTACTGGTGAAGAGACACTAAAGGATAAAGCTGAAGATTGCAAAGAGGTGTCTAAAGGCCAGACTGAAGTTATATTGATGACAGAAGAAAATGCAAAGGTTCCATTTAACCGTACACGAAAACCCTGCAAACAAGAAGAGTCAGGCTCTACCATTTCATGGACTATCATCAAATGCAAGAAACCCGTTGCAGAGACCGAGGATTTAAGAGAATTTAATCCAAGAGAACCAAATTACCTTCCAGCTGTAATGGATGAGGATGCTGAAAAAGTGGACCTCAAGCATCAAGACATAGATGAGAGGAGAAATTCAGAGGATTGGATGTTTGATTATGCTCTGCAGCGTGCTGTTAGCAAACTTGCCCCAGCAAGGAAGAGGAAAGTTGCATTACTCGTAGAGGCATTTGAAACCGTGCAACCACATGGTAGAGAACCTGAACAGGTTTTAAGTTATGGAAGACACCTTCAAGCCTGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaM_binding

Protein Analysis

612

Amino Acids

69.02

Weight (kDa)

4.87

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CaM_binding PF07839 500 - 592 8.4e-32 Plant calmodulin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 1518
AclWI GGATC 1 cut(s) 1240
AcsI RAATTY 4 cut(s) 281, 1148, 1571, 1666
AcuI CTGAAG 5 cut(s) 795, 1053, 1188, 1413, 1446
AfaI GTAC 1 cut(s) 1474
AfiI CCNNNNNNNGG 2 cut(s) 1518, 1728
AflIII ACRYGT 1 cut(s) 546
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 7 cut(s) 321, 415, 447, 532, 631, 1766, 1826
AjnI CCWGG 1 cut(s) 1248
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 7 cut(s) 139, 434, 603, 659, 1331, 1391, 1604
AluI AGCT 7 cut(s) 139, 434, 603, 659, 1331, 1391, 1604
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 8 cut(s) 491, 613, 857, 947, 1076, 1211, 1367, 1547
AlwI GGATC 1 cut(s) 1240
AlwNI CAGNNNCTG 1 cut(s) 1205
AoxI GGCC 1 cut(s) 1417
ApeKI GCWGC 3 cut(s) 578, 1331, 1699
ApoI RAATTY 4 cut(s) 281, 1148, 1571, 1666
AsiGI ACCGGT 1 cut(s) 314
Asp700I GAANNNNTTC 2 cut(s) 602, 1109
AspA2I CCTAGG 1 cut(s) 128
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 3 cut(s) 95, 892, 1633
AsuHPI GGTGA 3 cut(s) 216, 844, 1379
AsuII TTCGAA 1 cut(s) 1113
AvaII GGWCC 3 cut(s) 95, 892, 1633
AvrII CCTAGG 1 cut(s) 128
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 3 cut(s) 23, 30, 1822
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 3 cut(s) 590, 1318, 1711
BccI CCATC 4 cut(s) 676, 823, 908, 992
BcgI CGANNNNNNTGC 2 cut(s) 1467, 1501
BciT130I CCWGG 1 cut(s) 1250
BciVI GTATCC 1 cut(s) 597
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 8 cut(s) 491, 613, 857, 947, 1076, 1211, 1367, 1547
BfaI CTAG 4 cut(s) 129, 294, 692, 1287
BfmI CTRYAG 1 cut(s) 1697
BfuI GTATCC 1 cut(s) 597
BisI GCNGC 3 cut(s) 579, 1332, 1700
BlnI CCTAGG 1 cut(s) 128
BlsI GCNGC 3 cut(s) 580, 1333, 1701
Bme1390I CCNGG 1 cut(s) 1250
Bme18I GGWCC 3 cut(s) 95, 892, 1633
BmgT120I GGNCC 3 cut(s) 95, 892, 1633
BmiI GGNNCC 4 cut(s) 244, 405, 520, 1461
BmrFI CCNGG 1 cut(s) 1250
BmsI GCATC 8 cut(s) 471, 994, 1129, 1264, 1330, 1348, 1609, 1651
BpiI GAAGAC 3 cut(s) 23, 30, 1822
BplI GAGNNNNNCTC 2 cut(s) 1490, 1522
Bpu14I TTCGAA 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 68, 1622
Bsa29I ATCGAT 2 cut(s) 1176, 1311
BsaAI YACGTR 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 1008
BsaI GGTCTC 1 cut(s) 1547
BsaJI CCNNGG 3 cut(s) 128, 490, 1557
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 4 cut(s) 388, 418, 610, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 1518, 1728
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 246, 1369
Bse8I GATNNNNATC 1 cut(s) 1008
BseBI CCWGG 1 cut(s) 1250
BseCI ATCGAT 2 cut(s) 1176, 1311
BseDI CCNNGG 3 cut(s) 128, 490, 1557
BseGI GGATG 6 cut(s) 691, 880, 1144, 1618, 1624, 1686
BseJI GATNNNNATC 1 cut(s) 1008
BseLI CCNNNNNNNGG 2 cut(s) 1518, 1728
BseMII CTCAG 6 cut(s) 246, 654, 816, 873, 1071, 1341
BseNI ACTGG 2 cut(s) 246, 1369
BseRI GAGGAG 6 cut(s) 582, 631, 710, 875, 965, 1675
BseXI GCAGC 3 cut(s) 590, 1318, 1711
BseYI CCCAGC 1 cut(s) 1723
BshFI GGCC 1 cut(s) 1419
BshNI GGYRCC 1 cut(s) 242
BshTI ACCGGT 1 cut(s) 314
BshVI ATCGAT 2 cut(s) 1176, 1311
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 1518, 1728
BsmAI GTCTC 8 cut(s) 491, 613, 857, 947, 1076, 1211, 1367, 1547
BsnI GGCC 1 cut(s) 1419
Bso31I GGTCTC 1 cut(s) 1547
Bsp119I TTCGAA 1 cut(s) 1113
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 3 cut(s) 688, 1009, 1245
Bsp19I CCATGG 1 cut(s) 490
BspANI GGCC 1 cut(s) 1419
BspCNI CTCAG 6 cut(s) 247, 655, 817, 874, 1070, 1340
BspDI ATCGAT 2 cut(s) 1176, 1311
BspLI GGNNCC 4 cut(s) 244, 405, 520, 1461
BspMAI CTGCAG 1 cut(s) 1701
BspPI GGATC 1 cut(s) 1240
BspT104I TTCGAA 1 cut(s) 1113
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 1547
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 2 cut(s) 246, 1369
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 128, 490, 1557
BssMI GATC 3 cut(s) 688, 1009, 1245
BssT1I CCWWGG 2 cut(s) 128, 490
Bst2UI CCWGG 1 cut(s) 1250
Bst4CI ACNGT 5 cut(s) 386, 566, 769, 1472, 1771
Bst6I CTCTTC 5 cut(s) 110, 663, 1365, 1491, 1727
BstAPI GCANNNNNTGC 2 cut(s) 1205, 1340
BstBAI YACGTR 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 1113
BstC8I GCNNGC 2 cut(s) 1704, 1831
BstDEI CTNAG 6 cut(s) 255, 663, 825, 882, 1057, 1327
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 6 cut(s) 691, 880, 1144, 1618, 1624, 1686
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 3 cut(s) 691, 1012, 1248
BstMAI GTCTC 8 cut(s) 491, 613, 857, 947, 1076, 1211, 1367, 1547
BstMBI GATC 3 cut(s) 688, 1009, 1245
BstMWI GCNNNNNNNGC 2 cut(s) 1205, 1340
BstNI CCWGG 1 cut(s) 1250
BstSCI CCNGG 1 cut(s) 1248
BstSFI CTRYAG 1 cut(s) 1697
BstV1I GCAGC 3 cut(s) 590, 1318, 1711
BstV2I GAAGAC 3 cut(s) 23, 30, 1822
BstX2I RGATCY 1 cut(s) 1245
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 1 cut(s) 1245
Bsu15I ATCGAT 2 cut(s) 1176, 1311
BsuI GTATCC 1 cut(s) 597
BsuRI GGCC 1 cut(s) 1419
BsuTUI ATCGAT 2 cut(s) 1176, 1311
BtgI CCRYGG 1 cut(s) 490
BtsCI GGATG 6 cut(s) 691, 880, 1144, 1618, 1624, 1686
Cac8I GCNNGC 2 cut(s) 1704, 1831
CaiI CAGNNNCTG 1 cut(s) 1205
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 3 cut(s) 95, 892, 1633
ClaI ATCGAT 2 cut(s) 1176, 1311
Csp6I GTAC 1 cut(s) 1473
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 8 cut(s) 152, 194, 235, 326, 491, 575, 1518, 1781
CviQI GTAC 1 cut(s) 1473
DdeI CTNAG 6 cut(s) 255, 663, 825, 882, 1057, 1327
DpnI GATC 3 cut(s) 690, 1011, 1247
DpnII GATC 3 cut(s) 688, 1009, 1245
Eam1104I CTCTTC 5 cut(s) 110, 663, 1365, 1491, 1727
EarI CTCTTC 5 cut(s) 110, 663, 1365, 1491, 1727
Eco130I CCWWGG 2 cut(s) 128, 490
Eco31I GGTCTC 1 cut(s) 1547
Eco47I GGWCC 3 cut(s) 95, 892, 1633
Eco57I CTGAAG 5 cut(s) 795, 1053, 1188, 1413, 1446
EcoRII CCWGG 1 cut(s) 1248
EcoT14I CCWWGG 2 cut(s) 128, 490
ErhI CCWWGG 2 cut(s) 128, 490
FaeI CATG 8 cut(s) 155, 197, 238, 329, 494, 578, 1521, 1784
FatI CATG 8 cut(s) 151, 193, 234, 325, 490, 574, 1517, 1780
FbaI TGATCA 1 cut(s) 1009
Fnu4HI GCNGC 3 cut(s) 579, 1332, 1700
FokI GGATG 6 cut(s) 698, 887, 1151, 1625, 1631, 1693
Fsp4HI GCNGC 3 cut(s) 579, 1332, 1700
FspBI CTAG 4 cut(s) 129, 294, 692, 1287
GlaI GCGC 1 cut(s) 582
GluI GCNGC 3 cut(s) 579, 1332, 1700
GsaI CCCAGC 1 cut(s) 1727
HaeIII GGCC 1 cut(s) 1419
HapII CCGG 1 cut(s) 315
HhaI GCGC 1 cut(s) 583
Hin1II CATG 8 cut(s) 155, 197, 238, 329, 494, 578, 1521, 1784
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 3 cut(s) 137, 601, 657
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 1 cut(s) 315
HphI GGTGA 3 cut(s) 216, 844, 1379
Hpy166II GTNNAC 6 cut(s) 224, 346, 425, 557, 1475, 1633
Hpy188III TCNNGA 8 cut(s) 85, 415, 470, 529, 692, 980, 1051, 1646
Hpy8I GTNNAC 6 cut(s) 224, 346, 425, 557, 1475, 1633
HpyAV CCTTC 5 cut(s) 259, 770, 980, 1607, 1832
HpyCH4III ACNGT 5 cut(s) 386, 566, 769, 1472, 1771
HpyCH4IV ACGT 1 cut(s) 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 1205, 1340
HpyF3I CTNAG 6 cut(s) 255, 663, 825, 882, 1057, 1327
HpySE526I ACGT 1 cut(s) 548
Hsp92II CATG 8 cut(s) 155, 197, 238, 329, 494, 578, 1521, 1784
HspAI GCGC 1 cut(s) 581
Ksp22I TGATCA 1 cut(s) 1009
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 688, 1009, 1245
LmnI GCTCC 2 cut(s) 409, 779
Lsp1109I GCAGC 3 cut(s) 590, 1318, 1711
LweI GCATC 8 cut(s) 471, 994, 1129, 1264, 1330, 1348, 1609, 1651
MaeI CTAG 4 cut(s) 129, 294, 692, 1287
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 3 cut(s) 174, 362, 633
MalI GATC 3 cut(s) 690, 1011, 1247
MboI GATC 3 cut(s) 688, 1009, 1245
MflI RGATCY 1 cut(s) 1245
MhlI GDGCHC 1 cut(s) 784
MluCI AATT 8 cut(s) 229, 281, 1148, 1162, 1571, 1591, 1666, 1834
MlyI GAGTC 5 cut(s) 44, 872, 1091, 1241, 1508
MmeI TCCRAC 1 cut(s) 76
MroXI GAANNNNTTC 2 cut(s) 602, 1109
MslI CAYNNNNRTG 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 1331, 1604
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 1250
MvaI CCWGG 1 cut(s) 1250
MwoI GCNNNNNNNGC 2 cut(s) 1205, 1340
NcoI CCATGG 1 cut(s) 490
NdeII GATC 3 cut(s) 688, 1009, 1245
NlaIII CATG 8 cut(s) 155, 197, 238, 329, 494, 578, 1521, 1784
NlaIV GGNNCC 4 cut(s) 244, 405, 520, 1461
NmuCI GTSAC 2 cut(s) 174, 633
NspV TTCGAA 1 cut(s) 1113
PdmI GAANNNNTTC 2 cut(s) 602, 1109
PflMI CCANNNNNTGG 1 cut(s) 1518
PfoI TCCNGGA 1 cut(s) 1248
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 3 cut(s) 580, 1333, 1701
PleI GAGTC 5 cut(s) 43, 872, 1091, 1240, 1507
PpsI GAGTC 5 cut(s) 43, 872, 1091, 1240, 1507
Ppu21I YACGTR 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 1248
PspFI CCCAGC 1 cut(s) 1723
PspGI CCWGG 1 cut(s) 1248
PspN4I GGNNCC 4 cut(s) 244, 405, 520, 1461
PspPI GGNCC 3 cut(s) 95, 892, 1633
PsrI GAACNNNNNNTAC 2 cut(s) 712, 744
PstI CTGCAG 1 cut(s) 1701
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 1245
PvuII CAGCTG 2 cut(s) 1331, 1604
RsaI GTAC 1 cut(s) 1474
RsaNI GTAC 1 cut(s) 1473
RseI CAYNNNNRTG 1 cut(s) 573
SatI GCNGC 3 cut(s) 579, 1332, 1700
Sau3AI GATC 3 cut(s) 688, 1009, 1245
Sau96I GGNCC 3 cut(s) 95, 892, 1633
SchI GAGTC 5 cut(s) 44, 872, 1091, 1241, 1508
ScrFI CCNGG 1 cut(s) 1250
SduI GDGCHC 1 cut(s) 784
SfaNI GCATC 8 cut(s) 471, 994, 1129, 1264, 1330, 1348, 1609, 1651
SfcI CTRYAG 1 cut(s) 1697
SfuI TTCGAA 1 cut(s) 1113
SinI GGWCC 3 cut(s) 95, 892, 1633
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 83, 1637
SmoI CTYRAG 2 cut(s) 83, 1637
Sse9I AATT 8 cut(s) 229, 281, 1148, 1162, 1571, 1591, 1666, 1834
SspMI CTAG 4 cut(s) 129, 294, 692, 1287
StyD4I CCNGG 1 cut(s) 1248
StyI CCWWGG 2 cut(s) 128, 490
TaaI ACNGT 5 cut(s) 386, 566, 769, 1472, 1771
TaiI ACGT 1 cut(s) 551
TaqI TCGA 6 cut(s) 33, 371, 377, 1113, 1176, 1311
TaqII GACCGA 1 cut(s) 1571
TasI AATT 8 cut(s) 229, 281, 1148, 1162, 1571, 1591, 1666, 1834
TseFI GTSAC 2 cut(s) 174, 633
TseI GCWGC 3 cut(s) 578, 1331, 1699
Tsp45I GTSAC 2 cut(s) 174, 633
Van91I CCANNNNNTGG 1 cut(s) 1518
VpaK11BI GGWCC 3 cut(s) 95, 892, 1633
XapI RAATTY 4 cut(s) 281, 1148, 1571, 1666
XbaI TCTAGA 1 cut(s) 691
XmaJI CCTAGG 1 cut(s) 128
XmnI GAANNNNTTC 2 cut(s) 602, 1109
XspI CTAG 4 cut(s) 129, 294, 692, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.