MD02G1294400.v1.1

Plant calmodulin-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
34941929 .. 34943350
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1294400.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGGTCCAAAGAAAGGTGCCAAACAAGCTTGGAATCCAAGCTGATCATGATAAATTCGAGAAGCGGTTATCGAACCTGAAGACTTCTTCTCAGTTCCAAGATGGGAAACACAGAGGAGCTGATTTGAAGAAGATGATGAAGAAATCTAGATCAATCAAGCTTTCAGATGTTGAGAGCTTGAGATCATCACCTTTGGGGAAGAACTCATCTCAGCCAGGAAAGCCGCCACCGCCGGCTCTCAATGTTCCAAACACTGCGGCTTCCCCTCAGAAGCAGCCCCTGGCCAAAACAACTTATGGCTCGCCAAACTACATGAAGCCCACCAGCTGTTCTCATGCAAGGAAGGAGCAGTCACAGGTTAGTCTTCGAAGTTCTCCGCCAATATTTTCAGATAGTAAGAACCAGAACCAAAAAAATTCGGGCAGTTCAAAGCTTAGCTCTGCTTCTAGTAAACCTGAAAGAAGTTTAGCAAGGACATCTAGTTTGAAGCTTGCGAGAACTTTAATAAGGTCCCCTAGTTTTAAGCCGGCAAGAGCTCCGGCGAGAAAATCTTCCAGGGTTGCTCTTTGTGCAGATGTTAATGTTCAGAGAGCAACTTGTTCTTCAACACTGAAGGATACAAAGTTTCCGGATTATCTGATGATTAGTCCTGGGGGAACTGAAGCTGAGGGAACTTCAGTCATGGAGGTTTGCCCGTATACGTACTGTTCCCTTAATGGACATCGTCATTCACCTGTGCCACCATTGAAGAGTTTCTTGTCTGCGAGAAGACGTTCATTGAAGACCCAGAAGATGATGAAATTGCAAGCTCAAAGTCCACGTGGAGCAAAGCGATGTAATGATGGAGTAAAAGAAATTGATTTCCAGCAGATGTTTGATGAGAATGACAAAACAGCTGAGAAAGAAGCTGATTTGGATTTCTTTGTTGAAATCTATGCTACAAACAAGGAAGATGACACCGAGGCAATTGGAAGGAAAGCCGGAGCTGATTTTGTAGGAGAACAAGATGGTTACGAGGGTCCTGTGTTTCCAAATTCTGCAAGTGATGAAACAGAAACAGTAGATTATGCCAACAACCTAGTTGTGGAGAACCTGTCGGATAGATCACAGCATTCTGAGAGTGAATCTGAGGCAGAAAGCTTTCGCGAATTTCCTGAAGATCGAAAAGAAGAAGCAAATGAAGACTACGGATCACAGTCCGATCAAGAGGAAAATTCCACTGGAAGCTGCTCGAACGAGAGCAACTCTGAAGACCTTTCAAGCACTGAAATGGAGGATGCAACGGGAGCCCTGATAAAGGGAATTCAGAAACAGATCAAAACGTTCCAAGTGGTGACTTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

49.32

Weight (kDa)

8.48

Isoelectric Point (pI)

58.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 698
AccII CGCG 1 cut(s) 1146
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 5 cut(s) 64, 224, 230, 257, 377
AclI AACGTT 1 cut(s) 1322
AclWI GGATC 1 cut(s) 1198
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 6 cut(s) 53, 415, 1033, 1148, 1213, 1302
AcuI CTGAAG 6 cut(s) 98, 632, 660, 681, 1176, 1269
AcvI CACGTG 1 cut(s) 821
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 3 cut(s) 13, 1084, 1297
AgsI TTSAA 8 cut(s) 127, 429, 487, 606, 748, 781, 929, 1260
AjnI CCWGG 4 cut(s) 214, 279, 554, 649
Alw21I GWGCWC 1 cut(s) 538
AlwI GGATC 1 cut(s) 1198
AlwNI CAGNNNCTG 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 628
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 274, 1227
ApoI RAATTY 6 cut(s) 53, 415, 1033, 1148, 1213, 1302
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
Asp700I GAANNNNTTC 4 cut(s) 550, 752, 772, 1140
AspS9I GGNCC 3 cut(s) 4, 510, 1019
AsuHPI GGTGA 3 cut(s) 180, 723, 1345
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 3 cut(s) 4, 510, 1019
BalI TGGCCA 1 cut(s) 284
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 2 cut(s) 538, 1291
BbrPI CACGTG 1 cut(s) 821
BbsI GAAGAC 6 cut(s) 86, 356, 775, 788, 1188, 1257
Bbv12I GWGCWC 1 cut(s) 538
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 2 cut(s) 286, 1214
BccI CCATC 3 cut(s) 95, 836, 1001
BciT130I CCWGG 4 cut(s) 216, 281, 556, 651
BciVI GTATCC 1 cut(s) 610
BclI TGATCA 1 cut(s) 43
BfaI CTAG 5 cut(s) 147, 447, 480, 516, 1079
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 4 cut(s) 224, 258, 275, 1228
BlpI GCTNAGC 1 cut(s) 434
BlsI GCNGC 4 cut(s) 225, 259, 276, 1229
Bme1390I CCNGG 4 cut(s) 216, 281, 556, 651
Bme18I GGWCC 3 cut(s) 4, 510, 1019
BmgT120I GGNCC 3 cut(s) 4, 510, 1019
BmiI GGNNCC 4 cut(s) 18, 512, 1020, 1288
BmrFI CCNGG 4 cut(s) 216, 281, 556, 651
BmsI GCATC 1 cut(s) 1267
BpiI GAAGAC 6 cut(s) 86, 356, 775, 788, 1188, 1257
BplI GAGNNNNNCTC 2 cut(s) 1229, 1261
Bpu10I CCTNAGC 1 cut(s) 666
Bpu1102I GCTNAGC 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 199
BsaAI YACGTR 2 cut(s) 702, 821
BsaJI CCNNGG 4 cut(s) 279, 555, 650, 960
BsaWI WCCGGW 1 cut(s) 628
BsaXI ACNNNNNCTCC 2 cut(s) 1079, 1109
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 1084, 1297
Bse118I RCCGGY 2 cut(s) 232, 526
Bse1I ACTGG 1 cut(s) 1225
BseAI TCCGGA 1 cut(s) 628
BseBI CCWGG 4 cut(s) 216, 281, 556, 651
BseDI CCNNGG 4 cut(s) 279, 555, 650, 960
BseGI GGATG 1 cut(s) 1282
BseLI CCNNNNNNNGG 3 cut(s) 13, 1084, 1297
BseMII CTCAG 7 cut(s) 104, 224, 281, 657, 888, 1107, 1119
BseNI ACTGG 1 cut(s) 1225
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 2 cut(s) 286, 1214
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 1 cut(s) 1146
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 5 cut(s) 233, 527, 539, 629, 981
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 3 cut(s) 13, 1084, 1297
BsmFI GGGAC 1 cut(s) 496
BsmI GAATGC 1 cut(s) 1111
BsnI GGCC 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 538, 1291
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 8 cut(s) 43, 149, 182, 1103, 1159, 1190, 1201, 1314
Bsp1720I GCTNAGC 1 cut(s) 434
Bsp68I TCGCGA 1 cut(s) 1146
BspACI CCGC 5 cut(s) 64, 224, 230, 257, 377
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 7 cut(s) 103, 223, 280, 658, 889, 1108, 1120
BspEI TCCGGA 1 cut(s) 628
BspFNI CGCG 1 cut(s) 1146
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 4 cut(s) 18, 512, 1020, 1288
BspPI GGATC 1 cut(s) 1198
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 232, 526
BsrI ACTGG 1 cut(s) 1225
BssAI RCCGGY 2 cut(s) 232, 526
BssECI CCNNGG 4 cut(s) 279, 555, 650, 960
BssMI GATC 8 cut(s) 43, 149, 182, 1103, 1159, 1190, 1201, 1314
BssNAI GTATAC 1 cut(s) 699
Bst1107I GTATAC 1 cut(s) 699
Bst2UI CCWGG 4 cut(s) 216, 281, 556, 651
Bst4CI ACNGT 3 cut(s) 707, 1060, 1197
Bst6I CTCTTC 1 cut(s) 743
BstBAI YACGTR 2 cut(s) 702, 821
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 5 cut(s) 234, 302, 492, 528, 807
BstDEI CTNAG 9 cut(s) 90, 210, 267, 434, 666, 897, 1116, 1128, 1344
BstENI CCTNNNNNAGG 1 cut(s) 1295
BstF5I GGATG 1 cut(s) 1282
BstFNI CGCG 1 cut(s) 1146
BstKTI GATC 8 cut(s) 46, 152, 185, 1106, 1162, 1193, 1204, 1317
BstMBI GATC 8 cut(s) 43, 149, 182, 1103, 1159, 1190, 1201, 1314
BstMWI GCNNNNNNNGC 5 cut(s) 25, 220, 229, 569, 1286
BstNI CCWGG 4 cut(s) 216, 281, 556, 651
BstSCI CCNGG 4 cut(s) 214, 279, 554, 649
BstSNI TACGTA 1 cut(s) 702
BstUI CGCG 1 cut(s) 1146
BstV1I GCAGC 2 cut(s) 286, 1214
BstV2I GAAGAC 6 cut(s) 86, 356, 775, 788, 1188, 1257
BstZ17I GTATAC 1 cut(s) 699
BsuI GTATCC 1 cut(s) 610
BsuRI GGCC 1 cut(s) 284
BtgZI GCGATG 1 cut(s) 847
BtsCI GGATG 1 cut(s) 1282
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 4 cut(s) 252, 608, 1218, 1263
BtuMI TCGCGA 1 cut(s) 1146
Cac8I GCNNGC 5 cut(s) 234, 302, 492, 528, 807
CaiI CAGNNNCTG 1 cut(s) 280
CciI TCATGA 1 cut(s) 46
Cfr10I RCCGGY 2 cut(s) 232, 526
Cfr13I GGNCC 3 cut(s) 4, 510, 1019
Csp6I GTAC 1 cut(s) 703
CviAII CATG 4 cut(s) 47, 313, 335, 682
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 9 cut(s) 90, 210, 267, 434, 666, 897, 1116, 1128, 1344
DpnI GATC 8 cut(s) 45, 151, 184, 1105, 1161, 1192, 1203, 1316
DpnII GATC 8 cut(s) 43, 149, 182, 1103, 1159, 1190, 1201, 1314
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 743
EarI CTCTTC 1 cut(s) 743
EciI GGCGGA 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 536
Eco105I TACGTA 1 cut(s) 702
Eco24I GRGCYC 2 cut(s) 538, 1291
Eco47I GGWCC 3 cut(s) 4, 510, 1019
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 6 cut(s) 98, 632, 660, 681, 1176, 1269
Eco72I CACGTG 1 cut(s) 821
EcoICRI GAGCTC 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 1295
EcoO109I RGGNCCY 2 cut(s) 510, 1019
EcoRI GAATTC 1 cut(s) 1302
EcoRII CCWGG 4 cut(s) 214, 279, 554, 649
EcoT38I GRGCYC 2 cut(s) 538, 1291
FaeI CATG 4 cut(s) 50, 316, 338, 685
FaiI YATR 8 cut(s) 48, 297, 314, 336, 683, 699, 936, 1068
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 496
FatI CATG 4 cut(s) 46, 312, 334, 681
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 698
Fnu4HI GCNGC 4 cut(s) 224, 258, 275, 1228
FokI GGATG 1 cut(s) 1289
FriOI GRGCYC 2 cut(s) 538, 1291
Fsp4HI GCNGC 4 cut(s) 224, 258, 275, 1228
FspBI CTAG 5 cut(s) 147, 447, 480, 516, 1079
GluI GCNGC 4 cut(s) 224, 258, 275, 1228
HaeIII GGCC 1 cut(s) 284
HapII CCGG 5 cut(s) 233, 527, 539, 629, 981
Hin1II CATG 4 cut(s) 50, 316, 338, 685
HindIII AAGCTT 5 cut(s) 26, 158, 431, 488, 1138
HinfI GANTC 2 cut(s) 33, 1124
HpaII CCGG 5 cut(s) 233, 527, 539, 629, 981
HphI GGTGA 3 cut(s) 180, 723, 1345
Hpy166II GTNNAC 3 cut(s) 452, 699, 818
Hpy188III TCNNGA 7 cut(s) 47, 58, 147, 629, 1145, 1154, 1205
Hpy8I GTNNAC 3 cut(s) 452, 699, 818
HpyAV CCTTC 3 cut(s) 337, 607, 966
HpyCH4III ACNGT 3 cut(s) 707, 1060, 1197
HpyCH4IV ACGT 4 cut(s) 701, 772, 820, 1322
HpyCH4V TGCA 5 cut(s) 338, 572, 805, 1040, 1280
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 220, 229, 569, 1286
HpyF3I CTNAG 9 cut(s) 90, 210, 267, 434, 666, 897, 1116, 1128, 1344
HpySE526I ACGT 4 cut(s) 701, 772, 820, 1322
Hsp92II CATG 4 cut(s) 50, 316, 338, 685
Kpn2I TCCGGA 1 cut(s) 628
KroI GCCGGC 2 cut(s) 232, 526
KroNI GCCGGC 2 cut(s) 234, 528
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 8 cut(s) 43, 149, 182, 1103, 1159, 1190, 1201, 1314
LmnI GCTCC 6 cut(s) 116, 346, 541, 824, 983, 1286
Lsp1109I GCAGC 2 cut(s) 286, 1214
LweI GCATC 1 cut(s) 1267
MaeI CTAG 5 cut(s) 147, 447, 480, 516, 1079
MaeII ACGT 4 cut(s) 701, 772, 820, 1322
MaeIII GTNAC 3 cut(s) 351, 1010, 1333
MalI GATC 8 cut(s) 45, 151, 184, 1105, 1161, 1192, 1203, 1316
MboI GATC 8 cut(s) 43, 149, 182, 1103, 1159, 1190, 1201, 1314
MfeI CAATTG 1 cut(s) 966
MhlI GDGCHC 2 cut(s) 538, 1291
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 9 cut(s) 53, 415, 800, 855, 966, 1033, 1148, 1213, 1302
MluNI TGGCCA 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 1077
MnlI CCTC 9 cut(s) 107, 276, 661, 679, 955, 1009, 1123, 1201, 1267
Mox20I TGGCCA 1 cut(s) 284
MroI TCCGGA 1 cut(s) 628
MroNI GCCGGC 2 cut(s) 232, 526
MroXI GAANNNNTTC 4 cut(s) 550, 752, 772, 1140
MscI TGGCCA 1 cut(s) 284
MseI TTAA 4 cut(s) 503, 522, 579, 714
MslI CAYNNNNRTG 1 cut(s) 1268
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 2 cut(s) 327, 896
MspI CCGG 5 cut(s) 233, 527, 539, 629, 981
MspR9I CCNGG 4 cut(s) 216, 281, 556, 651
MunI CAATTG 1 cut(s) 966
Mva1269I GAATGC 1 cut(s) 1111
MvaI CCWGG 4 cut(s) 216, 281, 556, 651
MvnI CGCG 1 cut(s) 1146
MwoI GCNNNNNNNGC 5 cut(s) 25, 220, 229, 569, 1286
NaeI GCCGGC 2 cut(s) 234, 528
NdeII GATC 8 cut(s) 43, 149, 182, 1103, 1159, 1190, 1201, 1314
NgoMIV GCCGGC 2 cut(s) 232, 526
NlaIII CATG 4 cut(s) 50, 316, 338, 685
NlaIV GGNNCC 4 cut(s) 18, 512, 1020, 1288
NmuCI GTSAC 2 cut(s) 351, 1333
NruI TCGCGA 1 cut(s) 1146
NspV TTCGAA 1 cut(s) 367
PagI TCATGA 1 cut(s) 46
PctI GAATGC 1 cut(s) 1111
PdiI GCCGGC 2 cut(s) 234, 528
PdmI GAANNNNTTC 4 cut(s) 550, 752, 772, 1140
PfeI GAWTC 2 cut(s) 33, 1124
PflFI GACNNNGTC 1 cut(s) 723
PkrI GCNGC 4 cut(s) 225, 259, 276, 1229
PmaCI CACGTG 1 cut(s) 821
PmlI CACGTG 1 cut(s) 821
Ppu21I YACGTR 2 cut(s) 702, 821
PpuMI RGGWCCY 2 cut(s) 510, 1019
Psp124BI GAGCTC 1 cut(s) 538
Psp1406I AACGTT 1 cut(s) 1322
Psp5II RGGWCCY 2 cut(s) 510, 1019
Psp6I CCWGG 4 cut(s) 214, 279, 554, 649
PspCI CACGTG 1 cut(s) 821
PspGI CCWGG 4 cut(s) 214, 279, 554, 649
PspN4I GGNNCC 4 cut(s) 18, 512, 1020, 1288
PspPI GGNCC 3 cut(s) 4, 510, 1019
PspPPI RGGWCCY 2 cut(s) 510, 1019
PstNI CAGNNNCTG 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 723
PvuII CAGCTG 2 cut(s) 327, 896
RruI TCGCGA 1 cut(s) 1146
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
RseI CAYNNNNRTG 1 cut(s) 1268
SacI GAGCTC 1 cut(s) 538
SaqAI TTAA 4 cut(s) 503, 522, 579, 714
SatI GCNGC 4 cut(s) 224, 258, 275, 1228
Sau3AI GATC 8 cut(s) 43, 149, 182, 1103, 1159, 1190, 1201, 1314
Sau96I GGNCC 3 cut(s) 4, 510, 1019
ScrFI CCNGG 4 cut(s) 216, 281, 556, 651
SduI GDGCHC 2 cut(s) 538, 1291
SfaNI GCATC 1 cut(s) 1267
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 3 cut(s) 4, 510, 1019
SmiMI CAYNNNNRTG 1 cut(s) 1268
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SnaBI TACGTA 1 cut(s) 702
Sse9I AATT 9 cut(s) 53, 415, 800, 855, 966, 1033, 1148, 1213, 1302
SsiI CCGC 5 cut(s) 64, 224, 230, 257, 377
SspI AATATT 1 cut(s) 384
SspMI CTAG 5 cut(s) 147, 447, 480, 516, 1079
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 4 cut(s) 214, 279, 554, 649
TaaI ACNGT 3 cut(s) 707, 1060, 1197
TaiI ACGT 4 cut(s) 704, 775, 823, 1325
TaqI TCGA 5 cut(s) 57, 71, 367, 1162, 1232
TasI AATT 9 cut(s) 53, 415, 800, 855, 966, 1033, 1148, 1213, 1302
TauI GCSGC 2 cut(s) 226, 260
TfiI GAWTC 2 cut(s) 33, 1124
Tru1I TTAA 4 cut(s) 503, 522, 579, 714
Tru9I TTAA 4 cut(s) 503, 522, 579, 714
TscAI CASTG 4 cut(s) 259, 615, 1225, 1270
TseFI GTSAC 2 cut(s) 351, 1333
TseI GCWGC 2 cut(s) 274, 1227
Tsp45I GTSAC 2 cut(s) 351, 1333
TspDTI ATGAA 6 cut(s) 152, 329, 765, 812, 1062, 1194
TspGWI ACGGA 1 cut(s) 1203
TspRI CASTG 4 cut(s) 259, 615, 1225, 1270
Tth111I GACNNNGTC 1 cut(s) 723
VpaK11BI GGWCC 3 cut(s) 4, 510, 1019
XagI CCTNNNNNAGG 1 cut(s) 1295
XapI RAATTY 6 cut(s) 53, 415, 1033, 1148, 1213, 1302
XbaI TCTAGA 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 698
XmnI GAANNNNTTC 4 cut(s) 550, 752, 772, 1140
XspI CTAG 5 cut(s) 147, 447, 480, 516, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.