Rh7CG336800

Plant calmodulin-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003606
Physical Location & Seq
Reverse (-)
37617237 .. 37617707
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG336800.1

Sequence Viewer

Length: 471 bp
ATGGAAGTGGACAACACTTCAGAGCCAGAAGCAGCAGAAACTTTCCTCATGGCCAATAGTAGCATCGGTCCAGGGATGAAGAGAAAGTTTTCCCATCAAGAAAGCAATTCGGATGAAGAACTGCAATACACAAACCGGAAATGGAAAATCAATTGCAAGAGAAGTATCAAGGATGAGGAAGAACAATGGAAATATAATCAAAGAAAACCCAATTACCTGCCGTTGGTTCCTGGTCCTGAAGCAGAGAAGGTTGACTTGAGGCATCAGATAATAGATGAAAAGAAAAATGCAGAGGAATGGATGCTCGACTTTGCAATCCAACAAGCTGTAACCAAACTTGCTCCAGCTAGGAAGAAGAAGGTGGCATTGCTTGTTGAAGCTTTTGAGAAAGTCATGCCAGTGCCGCAATATGAACCCTGTTTGAAGCATTCTTCAGCAGCCTTCAGTCATGATAAGTCAAGTGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaM_binding

Protein Analysis

156

Amino Acids

18.01

Weight (kDa)

6.14

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CaM_binding PF07839 33 - 133 1.2e-29 Plant calmodulin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 225
AciI CCGC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 51
AcuI CTGAAG 3 cut(s) 258, 417, 427
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 2 cut(s) 377, 424
AjnI CCWGG 2 cut(s) 70, 229
AluBI AGCT 3 cut(s) 326, 347, 380
AluI AGCT 3 cut(s) 326, 347, 380
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 32, 437
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 68, 233
AvaII GGWCC 2 cut(s) 68, 233
BalI TGGCCA 1 cut(s) 53
BbvI GCAGC 2 cut(s) 44, 449
BccI CCATC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 2 cut(s) 72, 231
BfaI CTAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 225
BisI GCNGC 3 cut(s) 33, 404, 438
BlsI GCNGC 3 cut(s) 34, 405, 439
Bme1390I CCNGG 2 cut(s) 72, 231
Bme18I GGWCC 2 cut(s) 68, 233
BmgT120I GGNCC 2 cut(s) 68, 233
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 72, 231
BmsI GCATC 3 cut(s) 72, 271, 291
BpmI CTGGAG 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 365
BseBI CCWGG 2 cut(s) 72, 231
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 4 cut(s) 81, 118, 178, 306
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 44, 449
BshFI GGCC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 223
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 1 cut(s) 53
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 53
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 365
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 72, 231
Bst6I CTCTTC 1 cut(s) 74
BstF5I GGATG 4 cut(s) 81, 118, 178, 306
BstMWI GCNNNNNNNGC 1 cut(s) 403
BstNI CCWGG 2 cut(s) 72, 231
BstSCI CCNGG 2 cut(s) 70, 229
BstV1I GCAGC 2 cut(s) 44, 449
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 4 cut(s) 81, 118, 178, 306
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 225
CciI TCATGA 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 68, 233
CviAII CATG 3 cut(s) 49, 394, 449
CviJI RGCY 6 cut(s) 25, 53, 326, 347, 380, 440
CviKI_1 RGCY 6 cut(s) 25, 53, 326, 347, 380, 440
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco47I GGWCC 2 cut(s) 68, 233
Eco57I CTGAAG 3 cut(s) 258, 417, 427
EcoRII CCWGG 2 cut(s) 70, 229
FaeI CATG 3 cut(s) 52, 397, 452
FaiI YATR 5 cut(s) 50, 195, 395, 411, 450
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 3 cut(s) 48, 393, 448
Fnu4HI GCNGC 3 cut(s) 33, 404, 438
FokI GGATG 4 cut(s) 88, 125, 185, 313
Fsp4HI GCNGC 3 cut(s) 33, 404, 438
FspBI CTAG 1 cut(s) 348
GluI GCNGC 3 cut(s) 33, 404, 438
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 136
Hin1II CATG 3 cut(s) 52, 397, 452
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 378
HpaII CCGG 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 10, 253
Hpy188I TCNGA 3 cut(s) 22, 112, 267
Hpy188III TCNNGA 3 cut(s) 98, 236, 449
Hpy8I GTNNAC 2 cut(s) 10, 253
HpyAV CCTTC 3 cut(s) 241, 352, 451
HpyCH4V TGCA 5 cut(s) 124, 156, 290, 314, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 403
Hsp92II CATG 3 cut(s) 52, 397, 452
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 2 cut(s) 44, 449
LweI GCATC 3 cut(s) 72, 271, 291
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 6 cut(s) 91, 128, 191, 364, 367, 423
MfeI CAATTG 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 3 cut(s) 106, 151, 211
MluNI TGGCCA 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 4 cut(s) 56, 169, 252, 286
Mox20I TGGCCA 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 88
MscI TGGCCA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 2 cut(s) 72, 231
MunI CAATTG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 2 cut(s) 72, 231
MwoI GCNNNNNNNGC 1 cut(s) 403
NlaIII CATG 3 cut(s) 52, 397, 452
NlaIV GGNNCC 1 cut(s) 228
PagI TCATGA 1 cut(s) 448
PctI GAATGC 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 34, 405, 439
Psp6I CCWGG 2 cut(s) 70, 229
PspGI CCWGG 2 cut(s) 70, 229
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 68, 233
RseI CAYNNNNRTG 1 cut(s) 398
SatI GCNGC 3 cut(s) 33, 404, 438
Sau96I GGNCC 2 cut(s) 68, 233
ScrFI CCNGG 2 cut(s) 72, 231
SetI ASST 6 cut(s) 219, 252, 328, 349, 363, 382
SfaNI GCATC 3 cut(s) 72, 271, 291
SinI GGWCC 2 cut(s) 68, 233
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 3 cut(s) 106, 151, 211
SsiI CCGC 1 cut(s) 404
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 70, 229
TaqI TCGA 1 cut(s) 306
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 106, 151, 211
TauI GCSGC 1 cut(s) 406
TscAI CASTG 1 cut(s) 405
TseI GCWGC 2 cut(s) 32, 437
TspDTI ATGAA 4 cut(s) 92, 129, 291, 426
TspRI CASTG 1 cut(s) 405
VpaK11BI GGWCC 2 cut(s) 68, 233
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.