Rh7BG311900

Plant calmodulin-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003606
Physical Location & Seq
Reverse (-)
30157509 .. 30158272
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG311900.1

Sequence Viewer

Length: 687 bp
ATGAAGATGCTAGTAAGTAAAGATAACCTGGCCAATGGGGAGTACACGGATAATGCTAAAGCTGAATATGAATATCATATCTTCACAGAGAAGGATCAAAGTGAATTTAAGAAGGAAAAGATCTCAAGTTCCAGTGAAGGTGAGGATCAGAGTGATCTAAAGCTGAAGCAAATAGATGTAGCAGAAAACAGTGGCGGAGACATTGATAGAATGGAAGTGGACAACACTTCAGAGCCAGAAGCAGCAGAAACTTTCCTCATGGCCAATAGTAGCACCAGTCCAGGGATGAAGAGAAAGTTTTCCCATCAAGAAAGCAATTCGGATGAAGAACTGCAATACACAAACCGGAAATGGAAAATCAATTGCAAGAGAAGTATCAAGGATGAGGAAGAGCAATGGAAATATAATCAAAGAAAACCCAATTACCTGCCGTTGGTTCCTGGCCCTGAAGCAGAGAAGGTTGACTTGGGGCATCAGATAATAGATGAAAAGAAAAATGCAGAGGAATGGATGCTCGACTTTGCAATCCAACAAGCTGTAACCAAACTTGCTCCAGCTAGGAAGAAGAAGGTGGCATTGCTTGTTGAAGCTTTTGAGAAAGTCATGCCAGTGCCGCAATATGAACCCCGTTTGAAGCATTCTTCAGCAGCCTTCAGTCATGCAAGACCTATGCAAGCTTGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaM_binding

Protein Analysis

228

Amino Acids

26.14

Weight (kDa)

5.43

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CaM_binding PF07839 101 - 203 7.3e-28 Plant calmodulin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 435
AciI CCGC 2 cut(s) 195, 614
AclWI GGATC 2 cut(s) 102, 153
AcoI YGGCCR 2 cut(s) 30, 261
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 5 cut(s) 185, 213, 468, 627, 637
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 282, 433
AgsI TTSAA 2 cut(s) 587, 634
AjnI CCWGG 3 cut(s) 27, 280, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
AluBI AGCT 7 cut(s) 62, 163, 536, 557, 590, 677, 684
AluI AGCT 7 cut(s) 62, 163, 536, 557, 590, 677, 684
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 2 cut(s) 102, 153
AoxI GGCC 3 cut(s) 30, 261, 442
ApeKI GCWGC 2 cut(s) 242, 647
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 1 cut(s) 152
BalI TGGCCA 2 cut(s) 32, 263
BbvI GCAGC 2 cut(s) 254, 659
BccI CCATC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 415
BciT130I CCWGG 3 cut(s) 29, 282, 441
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 2 cut(s) 11, 558
BfuAI ACCTGC 1 cut(s) 435
BglII AGATCT 1 cut(s) 120
BisI GCNGC 3 cut(s) 243, 614, 648
BlsI GCNGC 3 cut(s) 244, 615, 649
Bme1390I CCNGG 3 cut(s) 29, 282, 441
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 3 cut(s) 29, 282, 441
BmsI GCATC 2 cut(s) 481, 501
BpmI CTGGAG 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 433
Bse1I ACTGG 3 cut(s) 132, 276, 608
Bse3DI GCAATG 2 cut(s) 401, 575
BseBI CCWGG 3 cut(s) 29, 282, 441
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 4 cut(s) 291, 328, 388, 516
BseLI CCNNNNNNNGG 2 cut(s) 282, 433
BseMI GCAATG 2 cut(s) 401, 575
BseNI ACTGG 3 cut(s) 132, 276, 608
BseXI GCAGC 2 cut(s) 254, 659
BshFI GGCC 3 cut(s) 32, 263, 444
BsiSI CCGG 1 cut(s) 346
BslI CCNNNNNNNGG 2 cut(s) 282, 433
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 3 cut(s) 32, 263, 444
Bsp143I GATC 4 cut(s) 94, 120, 145, 154
BspACI CCGC 2 cut(s) 195, 614
BspANI GGCC 3 cut(s) 32, 263, 444
BspLI GGNNCC 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 2 cut(s) 102, 153
BspQI GCTCTTC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 401, 575
BsrI ACTGG 3 cut(s) 132, 276, 608
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 4 cut(s) 94, 120, 145, 154
Bst2UI CCWGG 3 cut(s) 29, 282, 441
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 2 cut(s) 284, 384
BstC8I GCNNGC 1 cut(s) 675
BstF5I GGATG 4 cut(s) 291, 328, 388, 516
BstKTI GATC 4 cut(s) 97, 123, 148, 157
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 94, 120, 145, 154
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNI CCWGG 3 cut(s) 29, 282, 441
BstSCI CCNGG 3 cut(s) 27, 280, 439
BstV1I GCAGC 2 cut(s) 254, 659
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 3 cut(s) 32, 263, 444
BtsCI GGATG 4 cut(s) 291, 328, 388, 516
BtsIMutI CAGTG 3 cut(s) 139, 196, 615
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 675
Cfr13I GGNCC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 259, 604, 659
CviQI GTAC 1 cut(s) 43
DpnI GATC 4 cut(s) 96, 122, 147, 156
DpnII GATC 4 cut(s) 94, 120, 145, 154
EaeI YGGCCR 2 cut(s) 30, 261
Eam1104I CTCTTC 2 cut(s) 284, 384
EarI CTCTTC 2 cut(s) 284, 384
EciI GGCGGA 1 cut(s) 210
Eco57I CTGAAG 5 cut(s) 185, 213, 468, 627, 637
EcoRII CCWGG 3 cut(s) 27, 280, 439
FaeI CATG 3 cut(s) 262, 607, 662
FaiI YATR 8 cut(s) 69, 78, 260, 405, 605, 621, 660, 671
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 3 cut(s) 258, 603, 658
Fnu4HI GCNGC 3 cut(s) 243, 614, 648
FokI GGATG 4 cut(s) 298, 335, 395, 523
Fsp4HI GCNGC 3 cut(s) 243, 614, 648
FspBI CTAG 2 cut(s) 11, 558
GluI GCNGC 3 cut(s) 243, 614, 648
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 3 cut(s) 32, 263, 444
HapII CCGG 1 cut(s) 346
Hin1II CATG 3 cut(s) 262, 607, 662
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 2 cut(s) 588, 675
HpaII CCGG 1 cut(s) 346
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 45, 220, 463
Hpy188I TCNGA 4 cut(s) 150, 232, 322, 477
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 3 cut(s) 45, 220, 463
HpyAV CCTTC 6 cut(s) 85, 106, 131, 451, 562, 661
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 6 cut(s) 334, 366, 500, 524, 662, 673
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
Hsp92II CATG 3 cut(s) 262, 607, 662
Kzo9I GATC 4 cut(s) 94, 120, 145, 154
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 2 cut(s) 254, 659
LweI GCATC 2 cut(s) 481, 501
MaeI CTAG 2 cut(s) 11, 558
MaeIII GTNAC 1 cut(s) 538
MalI GATC 4 cut(s) 96, 122, 147, 156
MboI GATC 4 cut(s) 94, 120, 145, 154
MboII GAAGA 8 cut(s) 16, 73, 301, 338, 401, 574, 577, 633
MfeI CAATTG 1 cut(s) 361
MflI RGATCY 1 cut(s) 120
MlsI TGGCCA 2 cut(s) 32, 263
MluCI AATT 4 cut(s) 104, 316, 361, 421
MluNI TGGCCA 2 cut(s) 32, 263
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 4 cut(s) 136, 266, 379, 496
Mox20I TGGCCA 2 cut(s) 32, 263
MroXI GAANNNNTTC 1 cut(s) 298
MscI TGGCCA 2 cut(s) 32, 263
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 608
Msp20I TGGCCA 2 cut(s) 32, 263
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 3 cut(s) 29, 282, 441
MunI CAATTG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 3 cut(s) 29, 282, 441
MwoI GCNNNNNNNGC 1 cut(s) 613
NdeII GATC 4 cut(s) 94, 120, 145, 154
NlaIII CATG 3 cut(s) 262, 607, 662
NlaIV GGNNCC 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 384
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 298
PkrI GCNGC 3 cut(s) 244, 615, 649
Psp6I CCWGG 3 cut(s) 27, 280, 439
PspGI CCWGG 3 cut(s) 27, 280, 439
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 443
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 608
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 3 cut(s) 243, 614, 648
Sau3AI GATC 4 cut(s) 94, 120, 145, 154
Sau96I GGNCC 1 cut(s) 443
ScrFI CCNGG 3 cut(s) 29, 282, 441
SfaNI GCATC 2 cut(s) 481, 501
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 4 cut(s) 104, 316, 361, 421
SsiI CCGC 2 cut(s) 195, 614
SspMI CTAG 2 cut(s) 11, 558
StyD4I CCNGG 3 cut(s) 27, 280, 439
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 516
TasI AATT 4 cut(s) 104, 316, 361, 421
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 616
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 3 cut(s) 139, 196, 615
TseI GCWGC 2 cut(s) 242, 647
TspDTI ATGAA 6 cut(s) 17, 84, 302, 339, 501, 636
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 3 cut(s) 139, 196, 615
XapI RAATTY 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 298
XspI CTAG 2 cut(s) 11, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.