Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003606

Physical Location & Seq

Genomic Coordinates Reverse (-)

30158335 .. 30159358

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG312000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAGGAAAATGATTTCAAGCAAATGTTGTGTGATGACAATGAAAAGCCTGCTCAACAAGAAGTGGGGATCAATTTCTTTGTGGAAATATTTGCTAAAAGGAAGGAAGAAGATGCTCAGACATTTGTTGAGGATATACCTGAAGCAGAAATCATAGATTGCTTTACTGAAGAGGAGCAAAAAGAAGATGTGGCGGATGAAGAATACCAACCTCCTTTGGATCAAGAAGAACCTGCCATGAGAAACTGTTCGAGTGAGAGTGACTCTGATGGACTTTCGAGCATTGAAGTAGATTATGCCAATTCTGAAGCAACTGACATGGAGTGGGAGGAAGGGCAGTTTTCCCTTGCAGTGCTGTATGATGATGATGATGATGATGATGAATCTAGTTCAAATGCTGGGTTTTCATCAATTCAAGATGGTGATATGCATGAAGAACCTGTGATCAAGTCTGATGCCATTGTTACCGACTGCAATGACATCATTCATGATTACTATGAAAGAAAACTCCATCTTTTGAGACCCAACTCAAAAATGATGGCACAAAACAGAATTTCTGGCATTGAAGAATCTGAAAGATTGACCTATGACCAATTTTCTTACACTGAGGATTCATTTGAAGAAGACAGTGAACTATCAGAGACAGAAATAGAGATATCTTCATCTTCAATACAAGAGCCAACTGAGGACCTAACAGCAACCAGTGAGGAAGTTCAAGAGAAAACCAGAGTTTTTGAAGCAGAGGATCATGAAATGGAGTCCCATCTTGGAGATGTTGAAAGCCACTACACTGCTGCTTGTGAGACGAATGAAGCTTCAGATAGCCAACCAAGGAATGAATTTCAAGATAATGGAACAACTATGTCGACAAGTAACCACATTTCCAATGCTGCTCAGGATATCAGCACAACATATGAAGCTGAAACAAACGCAGAGAAAGAGGATTCAGAAACAGATAAAAGTGTTGTCACTGTTGTTTCTGGAAGAGGCACAGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

333

Amino Acids

37.64

Weight (kDa)

4.05

Isoelectric Point (pI)

66.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38800 AT3G54570
fragaria_vesca	FvH4_5g29010 FvH4_5g29010
malus_domestica	MD00G1188700.v1.1 MD02G1294400.v1.1 MD02G1294500.v1.1 MD07G1032000.v1.1 MD07G1032600.v1.1
prunus_persica	Prupe.2G029500_v2.0.a1 Prupe.2G029500_v2.0.a1 Prupe.2G029500_v2.0.a1 Prupe.2G029500_v2.0.a1
pyrus_communis	pycom02g24790
rosa_chinensis	RchiOBHm_Chr1g0319711
rosa_laevigata	RLG00000002328 RLG00000002329 RLG00000030462
rosa_multiflora	Rmu_sc0001301.1_g000023 Rmu_sc0002539.1_g000113
rosa_roxburghii	Rroxscaffold_3G00240740 Rroxscaffold_3G00240750 Rroxscaffold_4G00328170
rosa_rugosa	Rorug01G0029600 Rorug07G0178800 Rorug07G0178900
rosa_samantha	Rh1AG041500 Rh1BG038800 Rh1CG042400 Rh1DG027200 Rh7BG311900 Rh7BG312000 Rh7CG336800
rosa_wichuraiana	Rw1G003450 Rw7G027250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	866
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	3 cut(s)	77, 228, 753
AcsI	RAATTY	2 cut(s)	552, 839
AcuI	CTGAAG	4 cut(s)	162, 189, 327, 801
AluBI	AGCT	2 cut(s)	815, 920
AluI	AGCT	2 cut(s)	815, 920
Alw26I	GTCTC	3 cut(s)	514, 635, 797
AlwI	GGATC	3 cut(s)	77, 228, 753
ApeKI	GCWGC	2 cut(s)	794, 890
ApoI	RAATTY	2 cut(s)	552, 839
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	781, 877
BccI	CCATC	5 cut(s)	263, 413, 519, 532, 771
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	514, 635, 797
BfaI	CTAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	795, 891
BlsI	GCNGC	2 cut(s)	796, 892
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmsI	GCATC	2 cut(s)	103, 445
BpiI	GAAGAC	1 cut(s)	630
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
Bpu10I	CCTNAGC	1 cut(s)	894
BsaI	GGTCTC	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	830
Bse1I	ACTGG	1 cut(s)	702
Bse3DI	GCAATG	1 cut(s)	481
BseDI	CCNNGG	1 cut(s)	830
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	4 cut(s)	131, 597, 675, 908
BseNI	ACTGG	1 cut(s)	702
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	781, 877
BseYI	CCCAGC	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	745
BsmAI	GTCTC	3 cut(s)	514, 635, 797
BsmBI	CGTCTC	1 cut(s)	797
BsmFI	GGGAC	1 cut(s)	745
Bso31I	GGTCTC	1 cut(s)	514
Bsp143I	GATC	4 cut(s)	69, 220, 444, 745
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	4 cut(s)	130, 598, 676, 907
BspHI	TCATGA	2 cut(s)	487, 748
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	3 cut(s)	77, 228, 753
BspTNI	GGTCTC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	702
BssECI	CCNNGG	1 cut(s)	830
BssMI	GATC	4 cut(s)	69, 220, 444, 745
BssT1I	CCWWGG	1 cut(s)	830
Bst4CI	ACNGT	3 cut(s)	248, 629, 973
Bst6I	CTCTTC	2 cut(s)	165, 979
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	4 cut(s)	117, 606, 684, 894
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	4 cut(s)	72, 223, 447, 748
BstMAI	GTCTC	3 cut(s)	514, 635, 797
BstMBI	GATC	4 cut(s)	69, 220, 444, 745
BstV1I	GCAGC	2 cut(s)	781, 877
BstV2I	GAAGAC	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	2 cut(s)	357, 789
BtsIMutI	CAGTG	6 cut(s)	357, 603, 634, 709, 789, 969
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	51
CciI	TCATGA	2 cut(s)	487, 748
Cfr13I	GGNCC	1 cut(s)	688
CviAII	CATG	5 cut(s)	238, 319, 431, 488, 749
CviJI	RGCY	6 cut(s)	49, 679, 783, 815, 825, 920
CviKI_1	RGCY	6 cut(s)	49, 679, 783, 815, 825, 920
DdeI	CTNAG	4 cut(s)	117, 606, 684, 894
DpnI	GATC	4 cut(s)	71, 222, 446, 747
DpnII	GATC	4 cut(s)	69, 220, 444, 745
Eam1104I	CTCTTC	2 cut(s)	165, 979
EarI	CTCTTC	2 cut(s)	165, 979
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	830
Eco31I	GGTCTC	1 cut(s)	514
Eco32I	GATATC	2 cut(s)	657, 901
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	4 cut(s)	162, 189, 327, 801
EcoO109I	RGGNCCY	1 cut(s)	688
EcoRV	GATATC	2 cut(s)	657, 901
EcoT14I	CCWWGG	1 cut(s)	830
EcoT22I	ATGCAT	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	830
Esp3I	CGTCTC	1 cut(s)	797
FaeI	CATG	5 cut(s)	241, 322, 434, 491, 752
FaqI	GGGAC	1 cut(s)	745
FatI	CATG	5 cut(s)	237, 318, 430, 487, 748
FauNDI	CATATG	1 cut(s)	913
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	866
Fnu4HI	GCNGC	2 cut(s)	795, 891
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	795, 891
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	795, 891
GsaI	CCCAGC	1 cut(s)	402
Hin1II	CATG	5 cut(s)	241, 322, 434, 491, 752
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	813
HinfI	GANTC	6 cut(s)	263, 383, 569, 611, 758, 944
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	632, 867
Hpy188I	TCNGA	8 cut(s)	120, 268, 307, 454, 574, 640, 820, 949
Hpy188III	TCNNGA	8 cut(s)	224, 416, 488, 716, 749, 845, 896, 981
Hpy8I	GTNNAC	2 cut(s)	632, 867
HpyAV	CCTTC	2 cut(s)	97, 326
HpyCH4III	ACNGT	3 cut(s)	248, 629, 973
HpyCH4V	TGCA	3 cut(s)	350, 430, 474
HpyF3I	CTNAG	4 cut(s)	117, 606, 684, 894
Hsp92II	CATG	5 cut(s)	241, 322, 434, 491, 752
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	4 cut(s)	69, 220, 444, 745
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	2 cut(s)	781, 877
LweI	GCATC	2 cut(s)	103, 445
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	4 cut(s)	260, 463, 872, 967
MalI	GATC	4 cut(s)	71, 222, 446, 747
MboI	GATC	4 cut(s)	69, 220, 444, 745
MluCI	AATT	6 cut(s)	73, 301, 411, 552, 593, 839
MlyI	GAGTC	2 cut(s)	257, 767
Mph1103I	ATGCAT	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	247
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	4 cut(s)	69, 220, 444, 745
NlaIII	CATG	5 cut(s)	241, 322, 434, 491, 752
NmuCI	GTSAC	2 cut(s)	260, 967
NsiI	ATGCAT	1 cut(s)	432
PagI	TCATGA	2 cut(s)	487, 748
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	383, 569, 611, 944
PkrI	GCNGC	2 cut(s)	796, 892
PleI	GAGTC	2 cut(s)	257, 766
PpsI	GAGTC	2 cut(s)	257, 766
PpuMI	RGGWCCY	1 cut(s)	688
Psp5II	RGGWCCY	1 cut(s)	688
PspFI	CCCAGC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	688
PspPPI	RGGWCCY	1 cut(s)	688
SalI	GTCGAC	1 cut(s)	865
SatI	GCNGC	2 cut(s)	795, 891
Sau3AI	GATC	4 cut(s)	69, 220, 444, 745
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	2 cut(s)	257, 767
SetI	ASST	8 cut(s)	142, 214, 235, 442, 587, 693, 817, 922
SfaNI	GCATC	2 cut(s)	103, 445
SinI	GGWCC	1 cut(s)	688
Sse9I	AATT	6 cut(s)	73, 301, 411, 552, 593, 839
SsiI	CCGC	1 cut(s)	194
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	3 cut(s)	248, 629, 973
TaqI	TCGA	3 cut(s)	251, 278, 866
TasI	AATT	6 cut(s)	73, 301, 411, 552, 593, 839
TfiI	GAWTC	4 cut(s)	383, 569, 611, 944
TscAI	CASTG	6 cut(s)	357, 610, 634, 709, 796, 976
TseFI	GTSAC	2 cut(s)	260, 967
TseI	GCWGC	2 cut(s)	794, 890
Tsp45I	GTSAC	2 cut(s)	260, 967
TspRI	CASTG	6 cut(s)	357, 610, 634, 709, 796, 976
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	2 cut(s)	552, 839
XmiI	GTMKAC	1 cut(s)	866
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.