Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003606

Physical Location & Seq

Genomic Coordinates Reverse (-)

2705736 .. 2707010

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1032600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAAGCCCACCAGCTGTTCTCATGCAAGGAAGGACCAGAACCGAAAAAATTCAGGCAGTTCAAAGCTTGGCTCTGCTTCTAGTAAACCTGAAAGAAGTTTAGCAAGGACATCTGGTTTGCAGCTTGTGAGAACTTTAATGAAGTCCCCTAGTTTTAAGCCGGTAAGAGCTTCGGCGAAAAAAACTTCCAGGGTTGCTCTTTGTGCAGATGCGAATGTTCAGAGAGCAACTTGTTCTTCAACACTGAAGGATGCAAAGTTTCCTGACTATCTGACGATTAGTCCTGGGGGAACCGAAGCTGAGGGAACTTCAATCATGAAGGTTTGCCCGTATACGTACTGTTCTCTTAATGGCCATCATCGTTCGCCTGTGCCCCCATTGAAGAGTTTCTTGTCTGCAAGAAGACGTTCGTTGAAGACCCAGAAGATGATGAAATTGCAAGCTCTGAGTCCACGCGGAGCAAAGCGATGTAATGATGGAATAAAAGAAATTCATTTGCAGAAAATGTTGTTTGATGAGGATGAAAAAATTGCAGAGAAAGAAGCTGCTTTGGATTTCTTTGTTGAATTCTATGCTACAAACGAGGAAGATGGCACCGAGGCAATTGGAAGGAAAGCAGGAGTTGATTTTGTAGGAGAACAAGAAGTTTACGAGGGTCCTGCGTTTCCAAATGATGCAAGTGATGAAGCAGAAACAGAAAATTATGCCAACAACCTAGTTGTGGAGAACCCGTCGGATAGATCACCGCATTCGGAGAGTGAATCTGAGGCAGAAAGCTTCGAAGAATTTCCTGAAGAAGACCAAAAAGAAGATGCAGATGAAGACTACGGAGCACTGTCAGATCAAGAAGACAATTCCACTGGAAGCTGCTTGAAAGAGAGCGACTCTGAAGACCTTTCAAGCACTGAAATGGATTATTCCAGTTCTGAAAGTATTGACATGGAGTGGGAGGAAGGGCAATTTGCCACTACAGTGCTTGGTGATTATGAATCTGTTCCAAATGCCGGGTGTTCAACAAAAATTCAAGACACTGATAAGCAAGAAGAATCGCTGTTCAACTCCGACGCAATGAAAGGTAACAGCGATAATATGATTCCGGATTATTATGTATTATTGAAGAATGATGGTGACGTAAGTGAACAGGATGTGTCATTAAACAGAATTTTGAGATTCAAGAGTCTGGGAATGAGTATGAAAGATGGAGTTACGACCAACTTTCTTACACTGACGATGCATTCAAAGGAGGCAGTGAACTATCGGATACAGATTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

425

Amino Acids

46.89

Weight (kDa)

4.76

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38800 AT3G54570
fragaria_vesca	FvH4_5g29010 FvH4_5g29010
malus_domestica	MD00G1188700.v1.1 MD02G1294400.v1.1 MD02G1294500.v1.1 MD07G1032000.v1.1 MD07G1032600.v1.1
prunus_persica	Prupe.2G029500_v2.0.a1 Prupe.2G029500_v2.0.a1 Prupe.2G029500_v2.0.a1 Prupe.2G029500_v2.0.a1
pyrus_communis	pycom02g24790
rosa_chinensis	RchiOBHm_Chr1g0319711
rosa_laevigata	RLG00000002328 RLG00000002329 RLG00000030462
rosa_multiflora	Rmu_sc0001301.1_g000023 Rmu_sc0002539.1_g000113
rosa_roxburghii	Rroxscaffold_3G00240740 Rroxscaffold_3G00240750 Rroxscaffold_4G00328170
rosa_rugosa	Rorug01G0029600 Rorug07G0178800 Rorug07G0178900
rosa_samantha	Rh1AG041500 Rh1BG038800 Rh1CG042400 Rh1DG027200 Rh7BG311900 Rh7BG312000 Rh7CG336800
rosa_wichuraiana	Rw1G003450 Rw7G027250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	1 cut(s)	1096
AciI	CCGC	2 cut(s)	456, 746
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	6 cut(s)	49, 489, 566, 785, 1020, 1161
AcuI	CTGAAG	3 cut(s)	266, 813, 909
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	721, 1004
AhdI	GACNNNNNGTC	1 cut(s)	279
AjnI	CCWGG	2 cut(s)	188, 283
AleI	CACNNNNGTG	1 cut(s)	971
AluBI	AGCT	9 cut(s)	15, 67, 124, 170, 299, 443, 545, 777, 867
AluI	AGCT	9 cut(s)	15, 67, 124, 170, 299, 443, 545, 777, 867
Alw21I	GWGCWC	1 cut(s)	835
Aor13HI	TCCGGA	1 cut(s)	1096
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	3 cut(s)	121, 545, 867
ApoI	RAATTY	6 cut(s)	49, 489, 566, 785, 1020, 1161
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
Asp700I	GAANNNNTTC	5 cut(s)	49, 386, 406, 786, 993
AspS9I	GGNCC	2 cut(s)	34, 656
AsuC2I	CCSGG	1 cut(s)	1006
AsuHPI	GGTGA	3 cut(s)	735, 992, 1139
AsuII	TTCGAA	1 cut(s)	780
AvaII	GGWCC	2 cut(s)	34, 656
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	593
BbsI	GAAGAC	6 cut(s)	409, 422, 804, 828, 855, 897
Bbv12I	GWGCWC	1 cut(s)	835
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	133, 532, 854
BccI	CCATC	5 cut(s)	363, 470, 584, 1118, 1193
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BciT130I	CCWGG	2 cut(s)	190, 285
BciVI	GTATCC	1 cut(s)	1254
BcnI	CCSGG	1 cut(s)	1006
BfaI	CTAG	3 cut(s)	81, 150, 716
BfmI	CTRYAG	1 cut(s)	969
BfuI	GTATCC	1 cut(s)	1254
BisI	GCNGC	3 cut(s)	122, 546, 868
BlsI	GCNGC	3 cut(s)	123, 547, 869
Bme1390I	CCNGG	3 cut(s)	190, 285, 1006
Bme18I	GGWCC	2 cut(s)	34, 656
BmeRI	GACNNNNNGTC	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	34, 656
BmiI	GGNNCC	3 cut(s)	292, 595, 657
BmrFI	CCNGG	3 cut(s)	190, 285, 1006
BmsI	GCATC	5 cut(s)	199, 241, 664, 802, 1221
BpiI	GAAGAC	6 cut(s)	409, 422, 804, 828, 855, 897
BplI	GAGNNNNNCTC	2 cut(s)	869, 901
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	780
BpuMI	CCSGG	1 cut(s)	1006
BsaAI	YACGTR	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	189, 284, 597
BsaWI	WCCGGW	1 cut(s)	1096
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	721, 1004
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	865, 921
Bse3DI	GCAATG	1 cut(s)	1074
BseAI	TCCGGA	1 cut(s)	1096
BseBI	CCWGG	2 cut(s)	190, 285
BseDI	CCNNGG	3 cut(s)	189, 284, 597
BseGI	GGATG	3 cut(s)	256, 526, 1150
BseLI	CCNNNNNNNGG	2 cut(s)	721, 1004
BseMI	GCAATG	1 cut(s)	1074
BseMII	CTCAG	3 cut(s)	291, 437, 756
BseNI	ACTGG	2 cut(s)	865, 921
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	3 cut(s)	133, 532, 854
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	3 cut(s)	161, 1005, 1097
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	721, 1004
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	748, 1234
BsnI	GGCC	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	780
Bsp1286I	GDGCHC	2 cut(s)	375, 835
Bsp13I	TCCGGA	1 cut(s)	1096
Bsp143I	GATC	2 cut(s)	740, 841
BspACI	CCGC	2 cut(s)	456, 746
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	3 cut(s)	292, 438, 757
BspEI	TCCGGA	1 cut(s)	1096
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	292, 595, 657
BspT104I	TTCGAA	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	1074
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	865, 921
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	3 cut(s)	189, 284, 597
BssMI	GATC	2 cut(s)	740, 841
BssNAI	GTATAC	1 cut(s)	333
Bst1107I	GTATAC	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	190, 285
Bst4CI	ACNGT	3 cut(s)	341, 837, 973
Bst6I	CTCTTC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	780
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	3 cut(s)	300, 446, 765
BstF5I	GGATG	3 cut(s)	256, 526, 1150
BstFNI	CGCG	1 cut(s)	456
BstKTI	GATC	2 cut(s)	743, 844
BstMBI	GATC	2 cut(s)	740, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	190, 285
BstSCI	CCNGG	3 cut(s)	188, 283, 1004
BstSFI	CTRYAG	1 cut(s)	969
BstSLI	GKGCMC	1 cut(s)	375
BstSNI	TACGTA	1 cut(s)	336
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	133, 532, 854
BstV2I	GAAGAC	6 cut(s)	409, 422, 804, 828, 855, 897
BstZ17I	GTATAC	1 cut(s)	333
BsuI	GTATCC	1 cut(s)	1254
BsuRI	GGCC	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	481
BtsCI	GGATG	3 cut(s)	256, 526, 1150
BtsI	GCAGTG	1 cut(s)	1254
BtsIMutI	CAGTG	8 cut(s)	242, 833, 858, 903, 978, 1029, 1223, 1254
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	34, 656
CseI	GACGC	1 cut(s)	1073
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	3 cut(s)	23, 316, 940
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	300, 446, 765
DpnI	GATC	2 cut(s)	742, 843
DpnII	GATC	2 cut(s)	740, 841
DriI	GACNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	377
Eam1105I	GACNNNNNGTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	377
Eco105I	TACGTA	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	34, 656
Eco57I	CTGAAG	3 cut(s)	266, 813, 909
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	2 cut(s)	188, 283
EcoT22I	ATGCAT	1 cut(s)	1236
FaeI	CATG	3 cut(s)	26, 319, 943
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	3 cut(s)	22, 315, 939
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	3 cut(s)	122, 546, 868
FokI	GGATG	3 cut(s)	263, 533, 1157
Fsp4HI	GCNGC	3 cut(s)	122, 546, 868
FspBI	CTAG	3 cut(s)	81, 150, 716
GluI	GCNGC	3 cut(s)	122, 546, 868
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	3 cut(s)	161, 1005, 1097
HgaI	GACGC	1 cut(s)	1073
Hin1II	CATG	3 cut(s)	26, 319, 943
HindIII	AAGCTT	2 cut(s)	65, 775
HinfI	GANTC	8 cut(s)	448, 761, 884, 989, 1046, 1093, 1170, 1177
HpaII	CCGG	3 cut(s)	161, 1005, 1097
HphI	GGTGA	3 cut(s)	735, 992, 1139
Hpy166II	GTNNAC	6 cut(s)	86, 333, 452, 649, 1139, 1252
Hpy188III	TCNNGA	7 cut(s)	263, 316, 791, 845, 1025, 1097, 1174
Hpy8I	GTNNAC	6 cut(s)	86, 333, 452, 649, 1139, 1252
Hpy99I	CGWCG	2 cut(s)	736, 1067
HpyAV	CCTTC	5 cut(s)	25, 241, 313, 603, 947
HpyCH4III	ACNGT	3 cut(s)	341, 837, 973
HpyCH4IV	ACGT	3 cut(s)	335, 406, 1131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	300, 446, 765
HpySE526I	ACGT	3 cut(s)	335, 406, 1131
Hsp92II	CATG	3 cut(s)	26, 319, 943
Kpn2I	TCCGGA	1 cut(s)	1096
Kzo9I	GATC	2 cut(s)	740, 841
LmnI	GCTCC	2 cut(s)	458, 830
Lsp1109I	GCAGC	3 cut(s)	133, 532, 854
LweI	GCATC	5 cut(s)	199, 241, 664, 802, 1221
MaeI	CTAG	3 cut(s)	81, 150, 716
MaeII	ACGT	3 cut(s)	335, 406, 1131
MaeIII	GTNAC	3 cut(s)	1076, 1127, 1204
MalI	GATC	2 cut(s)	742, 843
MboI	GATC	2 cut(s)	740, 841
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	375, 835
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	3 cut(s)	457, 878, 1186
MmeI	TCCRAC	2 cut(s)	714, 1086
MnlI	CCTC	8 cut(s)	295, 511, 577, 592, 646, 760, 943, 1237
Mox20I	TGGCCA	1 cut(s)	354
Mph1103I	ATGCAT	1 cut(s)	1236
MroI	TCCGGA	1 cut(s)	1096
MroXI	GAANNNNTTC	5 cut(s)	49, 386, 406, 786, 993
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	4 cut(s)	137, 156, 348, 1154
MslI	CAYNNNNRTG	2 cut(s)	908, 971
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	3 cut(s)	161, 1005, 1097
MspR9I	CCNGG	3 cut(s)	190, 285, 1006
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	2 cut(s)	748, 1234
MvaI	CCWGG	2 cut(s)	190, 285
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	1006
NdeII	GATC	2 cut(s)	740, 841
NlaIII	CATG	3 cut(s)	26, 319, 943
NlaIV	GGNNCC	3 cut(s)	292, 595, 657
NmuCI	GTSAC	1 cut(s)	1127
NsiI	ATGCAT	1 cut(s)	1236
NspV	TTCGAA	1 cut(s)	780
OliI	CACNNNNGTG	1 cut(s)	971
PagI	TCATGA	1 cut(s)	315
PctI	GAATGC	2 cut(s)	748, 1234
PdmI	GAANNNNTTC	5 cut(s)	49, 386, 406, 786, 993
PfeI	GAWTC	5 cut(s)	761, 989, 1046, 1093, 1170
PkrI	GCNGC	3 cut(s)	123, 547, 869
PleI	GAGTC	3 cut(s)	456, 878, 1185
PpsI	GAGTC	3 cut(s)	456, 878, 1185
Ppu21I	YACGTR	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	656
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	2 cut(s)	188, 283
PspGI	CCWGG	2 cut(s)	188, 283
PspN4I	GGNNCC	3 cut(s)	292, 595, 657
PspPI	GGNCC	2 cut(s)	34, 656
PspPPI	RGGWCCY	1 cut(s)	656
PvuII	CAGCTG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	908, 971
SaqAI	TTAA	4 cut(s)	137, 156, 348, 1154
SatI	GCNGC	3 cut(s)	122, 546, 868
Sau3AI	GATC	2 cut(s)	740, 841
Sau96I	GGNCC	2 cut(s)	34, 656
SchI	GAGTC	3 cut(s)	457, 878, 1186
ScrFI	CCNGG	3 cut(s)	190, 285, 1006
SduI	GDGCHC	2 cut(s)	375, 835
SfaNI	GCATC	5 cut(s)	199, 241, 664, 802, 1221
SfcI	CTRYAG	1 cut(s)	969
SfuI	TTCGAA	1 cut(s)	780
SinI	GGWCC	2 cut(s)	34, 656
SmiMI	CAYNNNNRTG	2 cut(s)	908, 971
SnaBI	TACGTA	1 cut(s)	336
SsiI	CCGC	2 cut(s)	456, 746
SspMI	CTAG	3 cut(s)	81, 150, 716
StyD4I	CCNGG	3 cut(s)	188, 283, 1004
TaaI	ACNGT	3 cut(s)	341, 837, 973
TaiI	ACGT	3 cut(s)	338, 409, 1134
TaqI	TCGA	1 cut(s)	780
TfiI	GAWTC	5 cut(s)	761, 989, 1046, 1093, 1170
Tru1I	TTAA	4 cut(s)	137, 156, 348, 1154
Tru9I	TTAA	4 cut(s)	137, 156, 348, 1154
TscAI	CASTG	8 cut(s)	249, 840, 865, 910, 978, 1036, 1230, 1254
TseFI	GTSAC	1 cut(s)	1127
TseI	GCWGC	3 cut(s)	121, 545, 867
Tsp45I	GTSAC	1 cut(s)	1127
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	8 cut(s)	249, 840, 865, 910, 978, 1036, 1230, 1254
VpaK11BI	GGWCC	2 cut(s)	34, 656
XapI	RAATTY	6 cut(s)	49, 489, 566, 785, 1020, 1161
XmiI	GTMKAC	1 cut(s)	332
XmnI	GAANNNNTTC	5 cut(s)	49, 386, 406, 786, 993
XspI	CTAG	3 cut(s)	81, 150, 716
Zsp2I	ATGCAT	1 cut(s)	1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.