Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002936

Physical Location & Seq

Genomic Coordinates Reverse (-)

5028535 .. 5037880

Gene Structure 9346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0029600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAGACAAAATGTCGCTCAACGGATTCCAGATTACAAGACCCACCACTTAAAATCGATCCTTTTGAACCAGATGAACCAAGTGAGATCTGTAGTTCCAGTACAACAACTTCTGCTCATGCACAGCAAGATTCTCGTTTAGCAAAAGAAATCTATTTTAAAGTAGGTGTGCCTCTACACAATGCTGCTCAAAGAGGTGACTGGAAAGCGGCTAGACGAATCATAAAAAAATATGAGTCTATTTTGCGTGCCCGTATCACGAAAGGCGGGCAGACTGTTCTTCATATTTCTGCAGGAGCTAGACATGTACGATTTGTTAAAAAGTTGCTGAAATTGTTAGACGACCATGACTTAGCTATACAAGATCTAAAAGGGAATACAGCCTTTACTTATGCTGTGGCAGCTGGATCCCGGCGAGTGGCTGAGATGATGATACTGAAAAATCCAAGTCTGCCAACAATTCGTGGTGGTCAAGGAATGTCGACTCTTTATACTGCAGCTGCGTTTGGTCGTGGAGACATAGCGTGGCTTCTGTATCCGAAACTCATAAAAGTTATTGACGAAGCAGAACGAACTGGAATATTTTTTACTTTCATCAGCCACAACATGTATGAACTAGCCTTCAGAATTCTAAATGACTACCCGGCCCTTGCATTTGCTCGTGATGACAATCATGAGACAGCCTTACATTTGTTGGCTCAAAAGCCTTCAGCATTTTCCACCAAAACTTCAGCAATATGGAGGGTCCTCGTTTACTCATGTACAAAGCAGAACGGAAAGTTGGCAAAAGTTCCTGGGCTTCAATTATTAAAGTGCCTTCTGAATCAAGTTTTACGGCAGAATGACAGCTTGGTTAACGAGATCATAAGAATGCCGTCTCATGTAATGTTTATGGCAACAAAGTTGGGTAATTCCAAATTTGTGGCTGAGCTTATCGACTCCCATCCGGATTTAATATGGGAAACAGATGAGTGCAATCGGACTATATTTCACATTGCAGTTATGTACCACCATGCAAGTATCTTCAATCTAGTACATAAGTTGGGTGTATACAAGGAGTTCGTACTCTCTTTCAAAGATGATCAGAAGAATAACATATTGCATTTAGCGGCAAAGCTAGTTCCAGGACATCAGTTGAGTAACAAGTCAAGACATGCCATTCAAATGCGTGGAGACTTATTGTGGTTTGAGTGCAAAAGGTTGTTCCCCCTTGGTATGCAGAGAGGAGAAATTTACAAGGTCAAACACCTAGAGATATATTTTATGAAGAACATAATGTCTTATAGGATCTATCTGCAGCAGGGTCGACCCTTAGATCTTCACTTTTCTTCTGCCTGCAAAATAAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaM_binding

Protein Analysis

450

Amino Acids

51.23

Weight (kDa)

9.57

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34570 AT3G15750 AT3G15750 AT3G15750
fragaria_vesca	FvH4_3g19550 FvH4_5g29020
malus_domestica	MD00G1188600.v1.1 MD02G1294600.v1.1 MD07G1031900.v1.1
prunus_persica	Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1
pyrus_communis	pycom07g02300
rosa_chinensis	RchiOBHm_Chr1g0319701 RchiOBHm_Chr7g0218601
rosa_multiflora	Rmu_sc0002539.1_g000112
rosa_roxburghii	Rroxscaffold_3G00240760 Rroxscaffold_4G00328180
rosa_rugosa	Rorug01G0029500 Rorug01G0029600 Rorug05G0213200 Rorug05G0391300 Rorug07G0178700
rosa_samantha	Rh1AG041400 Rh1BG038700 Rh1CG042300 Rh1DG027300 Rh7AG319800 Rh7BG311800 Rh7CG336700 Rh7DG163300 Rh7DG318800
rosa_wichuraiana	Rw1G003440 Rw7G027240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	482, 1050, 1306
AccIII	TCCGGA	1 cut(s)	946
AciI	CCGC	3 cut(s)	209, 267, 1109
AclWI	GGATC	4 cut(s)	53, 402, 415, 1295
AcsI	RAATTY	3 cut(s)	627, 917, 1230
AcuI	CTGAAG	3 cut(s)	607, 693, 714
AfaI	GTAC	6 cut(s)	103, 309, 763, 1007, 1035, 1065
AfiI	CCNNNNNNNGG	1 cut(s)	418
AflIII	ACRYGT	2 cut(s)	304, 606
AgsI	TTSAA	5 cut(s)	68, 803, 1027, 1075, 1163
AhdI	GACNNNNNGTC	1 cut(s)	12
AjnI	CCWGG	2 cut(s)	793, 1123
AjuI	GAANNNNNNNTTGG	4 cut(s)	764, 796, 833, 865
AluBI	AGCT	7 cut(s)	299, 356, 404, 500, 849, 931, 1117
AluI	AGCT	7 cut(s)	299, 356, 404, 500, 849, 931, 1117
Alw26I	GTCTC	4 cut(s)	510, 671, 882, 1167
AlwI	GGATC	4 cut(s)	53, 402, 415, 1295
Aor13HI	TCCGGA	1 cut(s)	946
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	5 cut(s)	185, 401, 497, 500, 1297
ApoI	RAATTY	3 cut(s)	627, 917, 1230
AspS9I	GGNCC	2 cut(s)	646, 745
AsuC2I	CCSGG	2 cut(s)	412, 644
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	745
BaeGI	GKGCMC	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	407
BarI	GAAGNNNNNNTAC	2 cut(s)	94, 126
BauI	CACGAG	1 cut(s)	660
BbvI	GCAGC	5 cut(s)	172, 413, 487, 509, 1309
BccI	CCATC	1 cut(s)	951
BceAI	ACGGC	2 cut(s)	851, 859
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 1286, 1320
BciT130I	CCWGG	2 cut(s)	795, 1125
BciVI	GTATCC	1 cut(s)	546
BclI	TGATCA	1 cut(s)	1081
BcnI	CCSGG	2 cut(s)	412, 644
BcoDI	GTCTC	4 cut(s)	510, 671, 882, 1167
BfaI	CTAG	6 cut(s)	213, 300, 617, 1031, 1118, 1250
BfmI	CTRYAG	4 cut(s)	91, 291, 495, 1295
BfuI	GTATCC	1 cut(s)	546
BglII	AGATCT	3 cut(s)	87, 364, 1315
BisI	GCNGC	7 cut(s)	186, 210, 402, 498, 501, 1110, 1298
BlpI	GCTNAGC	1 cut(s)	927
BlsI	GCNGC	7 cut(s)	187, 211, 403, 499, 502, 1111, 1299
Bme1390I	CCNGG	4 cut(s)	412, 644, 795, 1125
Bme18I	GGWCC	1 cut(s)	745
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	646, 745
BmiI	GGNNCC	2 cut(s)	409, 746
BmrFI	CCNGG	4 cut(s)	412, 644, 795, 1125
Bpu1102I	GCTNAGC	1 cut(s)	927
BpuMI	CCSGG	2 cut(s)	412, 644
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	794, 1210
BsaWI	WCCGGW	1 cut(s)	946
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	3 cut(s)	99, 206, 580
Bse3DI	GCAATG	1 cut(s)	993
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	946
BseBI	CCWGG	2 cut(s)	795, 1125
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	794, 1210
BseGI	GGATG	1 cut(s)	943
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	2 cut(s)	414, 918
BseNI	ACTGG	3 cut(s)	99, 206, 580
BseRI	GAGGAG	1 cut(s)	1239
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	5 cut(s)	172, 413, 487, 509, 1309
BshFI	GGCC	1 cut(s)	647
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	412, 644, 947
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	4 cut(s)	510, 671, 882, 1167
BsmBI	CGTCTC	1 cut(s)	882
BsmI	GAATGC	1 cut(s)	876
BsnI	GGCC	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp13I	TCCGGA	1 cut(s)	946
Bsp1407I	TGTACA	1 cut(s)	761
Bsp143I	GATC	8 cut(s)	58, 87, 364, 407, 861, 1081, 1287, 1315
Bsp1720I	GCTNAGC	1 cut(s)	927
BspACI	CCGC	3 cut(s)	209, 267, 1109
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	2 cut(s)	415, 919
BspDI	ATCGAT	1 cut(s)	57
BspEI	TCCGGA	1 cut(s)	946
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	2 cut(s)	409, 746
BspMAI	CTGCAG	3 cut(s)	295, 499, 1299
BspPI	GGATC	4 cut(s)	53, 402, 415, 1295
BsrDI	GCAATG	1 cut(s)	993
BsrGI	TGTACA	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	99, 206, 580
BssECI	CCNNGG	2 cut(s)	794, 1210
BssMI	GATC	8 cut(s)	58, 87, 364, 407, 861, 1081, 1287, 1315
BssNAI	GTATAC	1 cut(s)	1051
BssSI	CACGAG	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	1210
Bst1107I	GTATAC	1 cut(s)	1051
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	795, 1125
Bst4CI	ACNGT	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	761
BstC8I	GCNNGC	3 cut(s)	249, 269, 1336
BstDEI	CTNAG	4 cut(s)	352, 423, 927, 1312
BstF5I	GGATG	1 cut(s)	943
BstKTI	GATC	8 cut(s)	61, 90, 367, 410, 864, 1084, 1290, 1318
BstMAI	GTCTC	4 cut(s)	510, 671, 882, 1167
BstMBI	GATC	8 cut(s)	58, 87, 364, 407, 861, 1081, 1287, 1315
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	2 cut(s)	795, 1125
BstNSI	RCATGY	3 cut(s)	308, 610, 1157
BstSCI	CCNGG	4 cut(s)	410, 642, 793, 1123
BstSFI	CTRYAG	4 cut(s)	91, 291, 495, 1295
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	5 cut(s)	172, 413, 487, 509, 1309
BstX2I	RGATCY	5 cut(s)	87, 364, 407, 1287, 1315
BstXI	CCANNNNNNTGG	1 cut(s)	922
BstYI	RGATCY	5 cut(s)	87, 364, 407, 1287, 1315
BstZ17I	GTATAC	1 cut(s)	1051
Bsu15I	ATCGAT	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	647
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	943
Cac8I	GCNNGC	3 cut(s)	249, 269, 1336
CciI	TCATGA	1 cut(s)	673
Cfr13I	GGNCC	2 cut(s)	646, 745
ClaI	ATCGAT	1 cut(s)	57
Csp6I	GTAC	6 cut(s)	102, 308, 762, 1006, 1034, 1064
CviAII	CATG	9 cut(s)	119, 305, 347, 607, 674, 759, 881, 1013, 1154
CviQI	GTAC	6 cut(s)	102, 308, 762, 1006, 1034, 1064
DdeI	CTNAG	4 cut(s)	352, 423, 927, 1312
DpnI	GATC	8 cut(s)	60, 89, 366, 409, 863, 1083, 1289, 1317
DpnII	GATC	8 cut(s)	58, 87, 364, 407, 861, 1081, 1287, 1315
DraI	TTTAAA	1 cut(s)	160
DriI	GACNNNNNGTC	1 cut(s)	12
Eam1105I	GACNNNNNGTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	1210
Eco47I	GGWCC	1 cut(s)	745
Eco57I	CTGAAG	3 cut(s)	607, 693, 714
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRI	GAATTC	1 cut(s)	627
EcoRII	CCWGG	2 cut(s)	793, 1123
EcoT14I	CCWWGG	1 cut(s)	1210
ErhI	CCWWGG	1 cut(s)	1210
Esp3I	CGTCTC	1 cut(s)	882
FaeI	CATG	9 cut(s)	122, 308, 350, 610, 677, 762, 884, 1016, 1157
FatI	CATG	9 cut(s)	118, 304, 346, 606, 673, 758, 880, 1012, 1153
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	1081
FblI	GTMKAC	3 cut(s)	482, 1050, 1306
Fnu4HI	GCNGC	7 cut(s)	186, 210, 402, 498, 501, 1110, 1298
FokI	GGATG	1 cut(s)	930
Fsp4HI	GCNGC	7 cut(s)	186, 210, 402, 498, 501, 1110, 1298
FspBI	CTAG	6 cut(s)	213, 300, 617, 1031, 1118, 1250
GluI	GCNGC	7 cut(s)	186, 210, 402, 498, 501, 1110, 1298
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	3 cut(s)	412, 644, 947
Hin1II	CATG	9 cut(s)	122, 308, 350, 610, 677, 762, 884, 1016, 1157
HincII	GTYRAC	3 cut(s)	483, 856, 1307
HindII	GTYRAC	3 cut(s)	483, 856, 1307
HinfI	GANTC	7 cut(s)	26, 131, 219, 236, 484, 823, 938
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	3 cut(s)	412, 644, 947
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	5 cut(s)	483, 754, 856, 1051, 1307
Hpy188I	TCNGA	5 cut(s)	540, 626, 822, 981, 1086
Hpy188III	TCNNGA	6 cut(s)	30, 259, 662, 674, 947, 1149
Hpy8I	GTNNAC	5 cut(s)	483, 754, 856, 1051, 1307
HpyAV	CCTTC	3 cut(s)	631, 717, 827
HpyCH4III	ACNGT	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	4 cut(s)	352, 423, 927, 1312
Hsp92II	CATG	9 cut(s)	122, 308, 350, 610, 677, 762, 884, 1016, 1157
Kpn2I	TCCGGA	1 cut(s)	946
Ksp22I	TGATCA	1 cut(s)	1081
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	8 cut(s)	58, 87, 364, 407, 861, 1081, 1287, 1315
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	5 cut(s)	172, 413, 487, 509, 1309
MaeI	CTAG	6 cut(s)	213, 300, 617, 1031, 1118, 1250
MaeIII	GTNAC	2 cut(s)	197, 1139
MalI	GATC	8 cut(s)	60, 89, 366, 409, 863, 1083, 1289, 1317
MboI	GATC	8 cut(s)	58, 87, 364, 407, 861, 1081, 1287, 1315
MboII	GAAGA	6 cut(s)	272, 1015, 1099, 1279, 1310, 1320
MflI	RGATCY	5 cut(s)	87, 364, 407, 1287, 1315
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	7 cut(s)	332, 459, 627, 803, 910, 917, 1230
MlyI	GAGTC	3 cut(s)	245, 478, 932
MnlI	CCTC	5 cut(s)	183, 188, 735, 758, 1217
MroI	TCCGGA	1 cut(s)	946
MseI	TTAA	6 cut(s)	51, 159, 318, 809, 855, 953
MslI	CAYNNNNRTG	2 cut(s)	869, 1163
MspA1I	CMGCKG	2 cut(s)	404, 500
MspI	CCGG	3 cut(s)	412, 644, 947
MspR9I	CCNGG	4 cut(s)	412, 644, 795, 1125
Mva1269I	GAATGC	1 cut(s)	876
MvaI	CCWGG	2 cut(s)	795, 1125
MwoI	GCNNNNNNNGC	1 cut(s)	401
NciI	CCSGG	2 cut(s)	412, 644
NdeII	GATC	8 cut(s)	58, 87, 364, 407, 861, 1081, 1287, 1315
NlaIII	CATG	9 cut(s)	122, 308, 350, 610, 677, 762, 884, 1016, 1157
NlaIV	GGNNCC	2 cut(s)	409, 746
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	3 cut(s)	308, 610, 1157
PagI	TCATGA	1 cut(s)	673
PciI	ACATGT	2 cut(s)	304, 606
PctI	GAATGC	1 cut(s)	876
PfeI	GAWTC	4 cut(s)	26, 131, 219, 823
PfoI	TCCNGGA	1 cut(s)	1123
PkrI	GCNGC	7 cut(s)	187, 211, 403, 499, 502, 1111, 1299
PleI	GAGTC	3 cut(s)	244, 478, 932
PpsI	GAGTC	3 cut(s)	244, 478, 932
PpuMI	RGGWCCY	1 cut(s)	745
PscI	ACATGT	2 cut(s)	304, 606
Psp5II	RGGWCCY	1 cut(s)	745
Psp6I	CCWGG	2 cut(s)	793, 1123
PspGI	CCWGG	2 cut(s)	793, 1123
PspN4I	GGNNCC	2 cut(s)	409, 746
PspPI	GGNCC	2 cut(s)	646, 745
PspPPI	RGGWCCY	1 cut(s)	745
PstI	CTGCAG	3 cut(s)	295, 499, 1299
PsuI	RGATCY	5 cut(s)	87, 364, 407, 1287, 1315
PvuII	CAGCTG	2 cut(s)	404, 500
RsaI	GTAC	6 cut(s)	103, 309, 763, 1007, 1035, 1065
RsaNI	GTAC	6 cut(s)	102, 308, 762, 1006, 1034, 1064
RseI	CAYNNNNRTG	2 cut(s)	869, 1163
SalI	GTCGAC	2 cut(s)	481, 1305
SaqAI	TTAA	6 cut(s)	51, 159, 318, 809, 855, 953
SatI	GCNGC	7 cut(s)	186, 210, 402, 498, 501, 1110, 1298
Sau3AI	GATC	8 cut(s)	58, 87, 364, 407, 861, 1081, 1287, 1315
Sau96I	GGNCC	2 cut(s)	646, 745
SchI	GAGTC	3 cut(s)	245, 478, 932
ScrFI	CCNGG	4 cut(s)	412, 644, 795, 1125
SduI	GDGCHC	1 cut(s)	253
SfcI	CTRYAG	4 cut(s)	91, 291, 495, 1295
SinI	GGWCC	1 cut(s)	745
SmiMI	CAYNNNNRTG	2 cut(s)	869, 1163
Sse9I	AATT	7 cut(s)	332, 459, 627, 803, 910, 917, 1230
SsiI	CCGC	3 cut(s)	209, 267, 1109
SspI	AATATT	1 cut(s)	582
SspMI	CTAG	6 cut(s)	213, 300, 617, 1031, 1118, 1250
StyD4I	CCNGG	4 cut(s)	410, 642, 793, 1123
StyI	CCWWGG	1 cut(s)	1210
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	4 cut(s)	57, 482, 936, 1306
TasI	AATT	7 cut(s)	332, 459, 627, 803, 910, 917, 1230
TatI	WGTACW	3 cut(s)	101, 761, 1033
TauI	GCSGC	2 cut(s)	212, 1112
TfiI	GAWTC	4 cut(s)	26, 131, 219, 823
Tru1I	TTAA	6 cut(s)	51, 159, 318, 809, 855, 953
Tru9I	TTAA	6 cut(s)	51, 159, 318, 809, 855, 953
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	5 cut(s)	185, 401, 497, 500, 1297
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	5 cut(s)	90, 272, 583, 627, 1280
TspGWI	ACGGA	2 cut(s)	38, 789
VpaK11BI	GGWCC	1 cut(s)	745
XapI	RAATTY	3 cut(s)	627, 917, 1230
XceI	RCATGY	3 cut(s)	308, 610, 1157
XmiI	GTMKAC	3 cut(s)	482, 1050, 1306
XspI	CTAG	6 cut(s)	213, 300, 617, 1031, 1118, 1250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.