Rh1BG038700

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002936
Physical Location & Seq
Forward (+)
5142157 .. 5144857
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG038700.1

Sequence Viewer

Length: 573 bp
ATGGACAAGGAATGGCAGAGGAGACGTGACCAATTCCATACGGTCGTTTTACAGTTTAAACTTTTGAATTTTTTCTTCGTCTATGTTCTGTTGTTTTTTAGATCAAGTGGTTCTAGTTCATCTTTAATTTTTGAAAATATGCAGATGGGATACCGTGATGGTGTTATAGCTGGAAAGGAAGCTTCTTCTCAGGAAGGATTCAATATTGGATTTAAGCAATCAGTCCATGTTGGTTACAACTGGGGTCTTGTGAGAGGTGTTACAAGCACATTGGCTTCCCTTCCAGATGGCATAAGGGAGAAGTTGATTGAAACAGAAGAACAAAGAACTCGATTTCAGGGATTGTATGAATCTGTTCATTCCCTTTCTACAACAGATGCCCTTGGGTTGTTTAACGATGAAATCACAAGTAAAAATGATAGAGAACAAATTGAAAGTTCAGAGACTAGTTCTTTTGAAGTTGAAACTGGTTTGGAAGAGCAAAGATTAGACCATAGTGGTCTAGGAAATTACTCTGCAAAGCTCCGTTCACTTCTTTTGGAGTCTCCTGGAATCAAAGTAAAGTTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

190

Amino Acids

21.61

Weight (kDa)

5.45

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 50 - 87 1.1e-10 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 67
AgsI TTSAA 7 cut(s) 67, 134, 202, 311, 434, 458, 464
AhlI ACTAGT 1 cut(s) 446
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 3 cut(s) 170, 182, 523
AluI AGCT 3 cut(s) 170, 182, 523
Alw26I GTCTC 3 cut(s) 16, 437, 549
ApoI RAATTY 1 cut(s) 67
Asp700I GAANNNNTTC 2 cut(s) 71, 354
BccI CCATC 3 cut(s) 139, 152, 281
BciT130I CCWGG 1 cut(s) 549
BciVI GTATCC 1 cut(s) 143
BcoDI GTCTC 3 cut(s) 16, 437, 549
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 4 cut(s) 114, 447, 503, 571
BfuI GTATCC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 549
BmgBI CACGTC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 549
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 367
BmuI ACTGGG 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 245, 472
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 245, 472
BseRI GAGGAG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 45
BsmAI GTCTC 3 cut(s) 16, 437, 549
BsmBI CGTCTC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 471
BsrI ACTGG 2 cut(s) 245, 472
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 3 cut(s) 43, 54, 155
Bst6I CTCTTC 1 cut(s) 471
BstDEI CTNAG 1 cut(s) 189
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 3 cut(s) 16, 437, 549
BstMBI GATC 1 cut(s) 101
BstMCI CGRYCG 1 cut(s) 45
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BsuI GTATCC 1 cut(s) 143
BtrI CACGTC 1 cut(s) 26
CviAII CATG 1 cut(s) 227
CviJI RGCY 4 cut(s) 170, 182, 275, 523
CviKI_1 RGCY 4 cut(s) 170, 182, 275, 523
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
DraI TTTAAA 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 1 cut(s) 230
FaiI YATR 8 cut(s) 39, 84, 140, 167, 228, 293, 348, 495
FatI CATG 1 cut(s) 226
FspBI CTAG 4 cut(s) 114, 447, 503, 571
Hin1II CATG 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 4 cut(s) 198, 350, 542, 552
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 2 cut(s) 191, 284
Hpy8I GTNNAC 1 cut(s) 530
HpyAV CCTTC 2 cut(s) 188, 290
HpyCH4III ACNGT 3 cut(s) 43, 54, 155
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 142, 518
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 1 cut(s) 101
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 1 cut(s) 528
LpnPI CCDG 8 cut(s) 156, 176, 226, 297, 323, 453, 534, 561
LweI GCATC 1 cut(s) 367
MaeI CTAG 4 cut(s) 114, 447, 503, 571
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 3 cut(s) 26, 233, 259
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 4 cut(s) 67, 177, 329, 488
MluCI AATT 5 cut(s) 32, 67, 126, 429, 508
MlyI GAGTC 1 cut(s) 551
MnlI CCTC 2 cut(s) 12, 248
MroXI GAANNNNTTC 2 cut(s) 71, 354
MseI TTAA 4 cut(s) 57, 125, 213, 393
MspR9I CCNGG 1 cut(s) 549
MssI GTTTAAAC 1 cut(s) 58
MvaI CCWGG 1 cut(s) 549
NdeII GATC 1 cut(s) 101
NlaIII CATG 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 471
PdmI GAANNNNTTC 2 cut(s) 71, 354
PfeI GAWTC 3 cut(s) 198, 350, 552
PfoI TCCNGGA 1 cut(s) 547
PleI GAGTC 1 cut(s) 550
PmeI GTTTAAAC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 4 cut(s) 57, 125, 213, 393
Sau3AI GATC 1 cut(s) 101
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 549
SetI ASST 5 cut(s) 28, 172, 184, 259, 525
SfaNI GCATC 1 cut(s) 367
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 5 cut(s) 32, 67, 126, 429, 508
SspI AATATT 1 cut(s) 205
SspMI CTAG 4 cut(s) 114, 447, 503, 571
StyD4I CCNGG 1 cut(s) 547
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 3 cut(s) 43, 54, 155
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 331
TasI AATT 5 cut(s) 32, 67, 126, 429, 508
TfiI GAWTC 3 cut(s) 198, 350, 552
Tru1I TTAA 4 cut(s) 57, 125, 213, 393
Tru9I TTAA 4 cut(s) 57, 125, 213, 393
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 108, 347, 363, 414
TspGWI ACGGA 1 cut(s) 515
XapI RAATTY 1 cut(s) 67
XmnI GAANNNNTTC 2 cut(s) 71, 354
XspI CTAG 4 cut(s) 114, 447, 503, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.