Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002936

Physical Location & Seq

Genomic Coordinates Reverse (-)

14828542 .. 14836057

Gene Structure 7516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0178700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

ATGGCTAATCTTGGTTATAAGGAATCGTTGTCATTTGGAGGCTCTGGCCATGCGCAGGGTCAACAAGTTGTGCCATTTGAGAGTGGAGCCCTGAAGCTTTTGCTACATGGGTCACTAGTTATATGTGTCAAGGAGGCCAAGAATCTTCCTGATATGGATGGTTTGCATAAGCATATGGGGCGTGTGATTTCCAAGTTGCCTGGCAGAAGTAGCAAAAAGACAACCAGTGCTCCATATGTTACAATTGCACTATCAGGTGCTGTAGTTGGGAGGACCTTTGTGATTAGTAATAGTCAGAACCCGGTCTGGAATCAACATTTTGATGTTCCGGTTGCGCACCATGCTTCTGAAGTGCATTTTGTTGTGAAGCATAGTGATGTGGTGGGATCCCAGACTATAGGTTCTGTGGGAATCCCAGTTGAAGAATTATACGCCGGCGTAAAAATTGAGGGAACCTTCCCTATCCTTAACTCTACTGGTCATATCTGTATGCCTGGAGTTGTTTTGAGCTTATCAATTCAGTATACCTCAATTCAAAAGATGACCTTCTGCAATTGTGGAGTAGGTTCAGATCCTGATCATCAAGGGGTCCCTGGTACTTACTTTCCTGTTAGGAAAGGCGGTAAAGTAACTCTGTATCAAGATGCCCATGTTCCTGATGGTTGCCTTCCCAATTTTGAGCTTGATGGCGGTCTTGAGTATGAGCATGGAAATTGTTGGCAAGACATATTTGATGCAATAAGTAAGGCCCGTCATTTGATATACATTACCGGGTGGTCATTGTGCCACAAAGTTACATTGGTTCGGGATAATCATGGTGCATCAGATTGCACATTAGGGGATCTTCTTAAGACCAAGTCACAGGAAGGTGTGAGAGTGCTGCTACTTGTTTGGGATGATCCAACTTCAAGGAATATCATGGGATCTATAAAGGGAGGGCTCATGCATACCAATGATGAGGAACTTCGGCGTTTCTTCAAAAACTCTTCAGTCCAAGTGCTTCTTTGCCCTCGATCTGCTGGAGAGGGTACCTGGGCCAAAAAGCAGGAAGCGGGAATAATCTATACCCATCATCAGAAAACTGTGCTTGTGGATGCTGATGCTGGTCAATATAAAAGAAAGATCATTGCATTTGTTGGAGGTCTTGATTTATGTCTGGGACGTTATGATACTCCAGAGCATCCTATCTTTAGTACATTACAAACAGTGCACAAGGATGACAATCATAACCCCACTTTCTCGAAACCCGTTATTGGGTGTCCGAGGGAGCCATGGCATGATTTGCACAGTAAAATTGATGGTCCAGCTGCTTATGACATCCTCACCAATTTTGAGCAGCGTTGGGGGATGGCTTCAAAACCACAGGGTCTTCACAAACTAAAAGAACGAGGGCTTCAAAAACTGAAAGTACGAGGGCTTCATAAACTAGAAACACAAGATGATGGTGATGATGATGCATTGCTTAAGACTGAGAAAATTCCAAAACTTATTGGGATGACAGAAGTTTCTTGCTTGAGTGAGGATGATAAAGAAGCTTGGGATGTTCAGGTATTCCGTTCAATTGATTCAAATTCAGCAAAAGGATTTCCTGAAGACCCCAAAGATGCAACTAGTGTGAACCTGGTCTGTGGGAAAAATGTGCTGATAGACATGAGTATACATGCAGCATATGTGAAAGCAATACGTGCAGCTCAACATTTTATTTACATAGAGAACCAGTACTTTCTTGGATCATCATATAATTGGAACTTATACAATGATTTAGGTGCAAACAATCTGATACCAATGGAAATTGCTCTGAAAATCGTAAATAAAATCAAAGCAAATGAGAAGTTTTCTGTGTATATTATTATCCCCATGTGGCCAGAAGGTGATCCTACAAGTGTTCCTCTACAACGAATTCTCCTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATGATTTACAAGGCTCTAAAGGAGGTTGGACTTGAAAACACGTACAGTCCACAAGACTATTTGAATTTCTTTTGCCTTGGCAATCGTGAGACACTAAGTGGAGAAGACAATTCTGCTCCAAATAATTTAAGTGAAGCAAACACTCCTCAAGCACTCACCCTGAAGAATCGGCGGTTTATGATTTATGTTCATTCTAAAGGAATGATAGTGGACGATGAATATGTTATACTAGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTCCCCGAGATACTGAAATAGCAATGGGGGCTTATCAGCCTCATCATACCTGGACAAGAAAACTCTCTAGTCCACATGGAAAGGTATATGGATATAGAATGTCACTGTGGGCAGAGCATATAGGACTTGTCGAAGAATGTTTCAAGCAGCCAGAGAGTCTTGAATGTGTCCGAAGGGTAAGGTCTTTGAGTGAGCAGAACTGGAGTCAATATGTAGCCGATGAAGTCACAGAAATGAAGGGTCACCTCCTCAAGTATCCGGTTGAAGTTGGTCCAACTGGCGAGGTGGAGCCTCTTCCAGGCTGTGCAGCATTTCCAGATGTCGGTGGCTACATACTGGGGAGTCTCGGCGACATAGGGAAGAGTCTAGGGATCAGTAGTATTAATGGGAGGGGAATATCATTCAGGGCCATGCAAGAAAATCTCACCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_11 AAA_12 Aquarius_N

Protein Analysis

879

Amino Acids

97.56

Weight (kDa)

6.41

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	37 - 154	2.3e-16	C2 domain
PLDc_2	PF13091	641 - 739	5e-06	PLD-like domain
PLDc	PF00614	708 - 733	8.5e-08	Phospholipase D Active site motif
PLD_C	PF12357	780 - 850	3.5e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34570 AT3G15750 AT3G15750 AT3G15750
fragaria_vesca	FvH4_3g19550 FvH4_5g29020
malus_domestica	MD00G1188600.v1.1 MD02G1294600.v1.1 MD07G1031900.v1.1
prunus_persica	Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1
pyrus_communis	pycom07g02300
rosa_chinensis	RchiOBHm_Chr1g0319701 RchiOBHm_Chr7g0218601
rosa_multiflora	Rmu_sc0002539.1_g000112
rosa_roxburghii	Rroxscaffold_3G00240760 Rroxscaffold_4G00328180
rosa_rugosa	Rorug01G0029500 Rorug01G0029600 Rorug05G0213200 Rorug05G0391300 Rorug07G0178700
rosa_samantha	Rh1AG041400 Rh1BG038700 Rh1CG042300 Rh1DG027300 Rh7AG319800 Rh7BG311800 Rh7CG336700 Rh7DG163300 Rh7DG318800
rosa_wichuraiana	Rw1G003440 Rw7G027240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
Acc16I	TGCGCA	2 cut(s)	54, 336
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	1 cut(s)	1028
AccI	GTMKAC	2 cut(s)	524, 1657
AciI	CCGC	4 cut(s)	621, 690, 1052, 2113
AcoI	YGGCCR	2 cut(s)	46, 1862
AcsI	RAATTY	4 cut(s)	1476, 1570, 1899, 2005
AcuI	CTGAAG	5 cut(s)	113, 369, 972, 1611, 2123
AdeI	CACNNNGTG	1 cut(s)	2039
AfaI	GTAC	6 cut(s)	598, 1030, 1195, 1410, 1721, 1985
AfiI	CCNNNNNNNGG	5 cut(s)	55, 1253, 1254, 2504, 2528
AflII	CTTAAG	2 cut(s)	848, 1463
AflIII	ACRYGT	1 cut(s)	1980
AhlI	ACTAGT	2 cut(s)	115, 1610
AjnI	CCWGG	7 cut(s)	199, 493, 592, 1031, 1620, 2255, 2503
AjuI	GAANNNNNNNTTGG	2 cut(s)	1891, 1923
AluBI	AGCT	6 cut(s)	97, 510, 682, 1307, 1535, 1691
AluI	AGCT	6 cut(s)	97, 510, 682, 1307, 1535, 1691
Alw21I	GWGCWC	2 cut(s)	232, 1212
Alw26I	GTCTC	2 cut(s)	2024, 2555
Alw44I	GTGCAC	1 cut(s)	1208
AlwNI	CAGNNNCTG	2 cut(s)	260, 575
Ama87I	CYCGRG	1 cut(s)	2211
AoxI	GGCC	6 cut(s)	46, 135, 747, 1035, 1862, 2613
ApaLI	GTGCAC	1 cut(s)	1208
ApeKI	GCWGC	8 cut(s)	880, 1307, 1336, 1664, 1688, 1912, 2353, 2513
ApoI	RAATTY	4 cut(s)	1476, 1570, 1899, 2005
AseI	ATTAAT	1 cut(s)	2589
Asp718I	GGTACC	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	55, 337
AspS9I	GGNCC	8 cut(s)	273, 589, 748, 1035, 1301, 2207, 2477, 2613
AsuC2I	CCSGG	2 cut(s)	302, 772
AsuHPI	GGTGA	6 cut(s)	1315, 1457, 1883, 2089, 2441, 2623
AvaI	CYCGRG	1 cut(s)	2211
AvaII	GGWCC	5 cut(s)	273, 589, 1301, 2207, 2477
BaeGI	GKGCMC	1 cut(s)	1212
BalI	TGGCCA	2 cut(s)	48, 1864
BamHI	GGATCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	1028
BanII	GRGCYC	2 cut(s)	91, 942
BarI	GAAGNNNNNNTAC	2 cut(s)	1401, 1433
BbsI	GAAGAC	3 cut(s)	1361, 1599, 2052
Bbv12I	GWGCWC	2 cut(s)	232, 1212
BbvI	GCAGC	8 cut(s)	867, 1294, 1348, 1676, 1700, 1924, 2365, 2525
BccI	CCATC	7 cut(s)	152, 653, 680, 1077, 1292, 1342, 1436
BciT130I	CCWGG	7 cut(s)	201, 495, 594, 1033, 1622, 2257, 2505
BciVI	GTATCC	1 cut(s)	2472
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	2 cut(s)	302, 772
BcoDI	GTCTC	2 cut(s)	2024, 2555
BcuI	ACTAGT	2 cut(s)	115, 1610
BfaI	CTAG	6 cut(s)	116, 1427, 1611, 2171, 2274, 2573
BfmI	CTRYAG	2 cut(s)	261, 396
BfrI	CTTAAG	2 cut(s)	848, 1463
BfuI	GTATCC	1 cut(s)	2472
BisI	GCNGC	8 cut(s)	881, 1308, 1337, 1665, 1689, 1913, 2354, 2514
BlsI	GCNGC	8 cut(s)	882, 1309, 1338, 1666, 1690, 1914, 2355, 2515
BmcAI	AGTACT	1 cut(s)	1721
Bme1390I	CCNGG	9 cut(s)	201, 302, 495, 594, 772, 1033, 1622, 2257, 2505
Bme18I	GGWCC	5 cut(s)	273, 589, 1301, 2207, 2477
BmeT110I	CYCGRG	1 cut(s)	2211
BmgT120I	GGNCC	8 cut(s)	273, 589, 748, 1035, 1301, 2207, 2477, 2613
BmiI	GGNNCC	9 cut(s)	88, 388, 454, 590, 591, 1030, 1269, 2209, 2496
BmrFI	CCNGG	9 cut(s)	201, 302, 495, 594, 772, 1033, 1622, 2257, 2505
BmrI	ACTGGG	2 cut(s)	410, 2552
BmsI	GCATC	8 cut(s)	634, 724, 830, 1084, 1090, 1189, 1444, 1594
BmuI	ACTGGG	2 cut(s)	410, 2552
BpiI	GAAGAC	3 cut(s)	1361, 1599, 2052
BpmI	CTGGAG	4 cut(s)	516, 1041, 1158, 2428
BpuEI	CTTGAG	4 cut(s)	716, 1534, 2073, 2441
BpuMI	CCSGG	2 cut(s)	302, 772
BsaAI	YACGTR	2 cut(s)	1685, 1983
BsaBI	GATNNNNATC	2 cut(s)	576, 1221
BsaJI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 2017, 2199
BsaWI	WCCGGW	2 cut(s)	328, 2464
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 1887, 1917
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 1253, 1254, 2504, 2528
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	7 cut(s)	225, 416, 481, 1717, 2411, 2488, 2547
Bse3DI	GCAATG	3 cut(s)	1125, 1457, 2235
Bse8I	GATNNNNATC	2 cut(s)	576, 1221
BseBI	CCWGG	7 cut(s)	201, 495, 594, 1033, 1622, 2257, 2505
BseDI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 2017, 2199
BseJI	GATNNNNATC	2 cut(s)	576, 1221
BseLI	CCNNNNNNNGG	5 cut(s)	55, 1253, 1254, 2504, 2528
BseMI	GCAATG	3 cut(s)	1125, 1457, 2235
BseMII	CTCAG	1 cut(s)	1461
BseNI	ACTGG	7 cut(s)	225, 416, 481, 1717, 2411, 2488, 2547
BseRI	GAGGAG	2 cut(s)	2076, 2444
BseSI	GKGCMC	1 cut(s)	1212
BseXI	GCAGC	8 cut(s)	867, 1294, 1348, 1676, 1700, 1924, 2365, 2525
BsgI	GTGCAG	2 cut(s)	1707, 2532
BshFI	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2615
BshNI	GGYRCC	1 cut(s)	1028
BsiHKAI	GWGCWC	2 cut(s)	232, 1212
BsiHKCI	CYCGRG	1 cut(s)	2211
BsiSI	CCGG	5 cut(s)	302, 329, 435, 771, 2465
BslFI	GGGAC	3 cut(s)	575, 1173, 2193
BslI	CCNNNNNNNGG	5 cut(s)	55, 1253, 1254, 2504, 2528
BsmAI	GTCTC	2 cut(s)	2024, 2555
BsmFI	GGGAC	3 cut(s)	575, 1173, 2193
BsnI	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2615
BsoBI	CYCGRG	1 cut(s)	2211
Bsp1286I	GDGCHC	4 cut(s)	91, 232, 942, 1212
Bsp19I	CCATGG	2 cut(s)	1271, 2199
BspACI	CCGC	4 cut(s)	621, 690, 1052, 2113
BspANI	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2615
BspCNI	CTCAG	1 cut(s)	1462
BspLI	GGNNCC	9 cut(s)	88, 388, 454, 590, 591, 1030, 1269, 2209, 2496
BspT107I	GGYRCC	1 cut(s)	1028
BspTI	CTTAAG	2 cut(s)	848, 1463
BsrDI	GCAATG	3 cut(s)	1125, 1457, 2235
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	7 cut(s)	225, 416, 481, 1717, 2411, 2488, 2547
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 2017, 2199
BssNAI	GTATAC	2 cut(s)	525, 1658
BssT1I	CCWWGG	3 cut(s)	1271, 2017, 2199
Bst1107I	GTATAC	2 cut(s)	525, 1658
Bst2UI	CCWGG	7 cut(s)	201, 495, 594, 1033, 1622, 2257, 2505
Bst4CI	ACNGT	5 cut(s)	1084, 1207, 1289, 1988, 2313
Bst6I	CTCTTC	3 cut(s)	991, 2505, 2561
BstAFI	CTTAAG	2 cut(s)	848, 1463
BstAPI	GCANNNNNTGC	2 cut(s)	1282, 1685
BstBAI	YACGTR	2 cut(s)	1685, 1983
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	1470, 2036
BstDSI	CCRYGG	2 cut(s)	1271, 2199
BstEII	GGTNACC	1 cut(s)	2447
BstENI	CCTNNNNNAGG	1 cut(s)	2502
BstHHI	GCGC	2 cut(s)	55, 337
BstMAI	GTCTC	2 cut(s)	2024, 2555
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 210, 341, 1282, 1685, 2234
BstNI	CCWGG	7 cut(s)	201, 495, 594, 1033, 1622, 2257, 2505
BstNSI	RCATGY	1 cut(s)	1664
BstPI	GGTNACC	1 cut(s)	2447
BstSCI	CCNGG	9 cut(s)	199, 300, 493, 592, 770, 1031, 1620, 2255, 2503
BstSFI	CTRYAG	2 cut(s)	261, 396
BstSLI	GKGCMC	1 cut(s)	1212
BstV1I	GCAGC	8 cut(s)	867, 1294, 1348, 1676, 1700, 1924, 2365, 2525
BstV2I	GAAGAC	3 cut(s)	1361, 1599, 2052
BstX2I	RGATCY	5 cut(s)	386, 571, 841, 923, 2174
BstYI	RGATCY	5 cut(s)	386, 571, 841, 923, 2174
BstZ17I	GTATAC	2 cut(s)	525, 1658
BsuI	GTATCC	1 cut(s)	2472
BsuRI	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2615
BtgI	CCRYGG	2 cut(s)	1271, 2199
BtsIMutI	CAGTG	3 cut(s)	232, 1212, 2309
Cac8I	GCNNGC	1 cut(s)	436
CaiI	CAGNNNCTG	2 cut(s)	260, 575
CfoI	GCGC	2 cut(s)	55, 337
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	8 cut(s)	273, 589, 748, 1035, 1301, 2207, 2477, 2613
CsiI	ACCWGGT	1 cut(s)	1620
Csp6I	GTAC	6 cut(s)	597, 1029, 1194, 1409, 1720, 1984
CviQI	GTAC	6 cut(s)	597, 1029, 1194, 1409, 1720, 1984
DdeI	CTNAG	2 cut(s)	1470, 2036
DraIII	CACNNNGTG	1 cut(s)	2039
EaeI	YGGCCR	2 cut(s)	46, 1862
Eam1104I	CTCTTC	3 cut(s)	991, 2505, 2561
EarI	CTCTTC	3 cut(s)	991, 2505, 2561
Eco130I	CCWWGG	3 cut(s)	1271, 2017, 2199
Eco24I	GRGCYC	2 cut(s)	91, 942
Eco47I	GGWCC	5 cut(s)	273, 589, 1301, 2207, 2477
Eco57I	CTGAAG	5 cut(s)	113, 369, 972, 1611, 2123
Eco88I	CYCGRG	1 cut(s)	2211
Eco91I	GGTNACC	1 cut(s)	2447
EcoNI	CCTNNNNNAGG	1 cut(s)	2502
EcoO109I	RGGNCCY	3 cut(s)	273, 589, 2207
EcoO65I	GGTNACC	1 cut(s)	2447
EcoRI	GAATTC	1 cut(s)	1899
EcoRII	CCWGG	7 cut(s)	199, 493, 592, 1031, 1620, 2255, 2503
EcoT14I	CCWWGG	3 cut(s)	1271, 2017, 2199
EcoT22I	ATGCAT	2 cut(s)	948, 1459
EcoT38I	GRGCYC	2 cut(s)	91, 942
ErhI	CCWWGG	3 cut(s)	1271, 2017, 2199
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 987, 1019
FaqI	GGGAC	3 cut(s)	575, 1173, 2193
FauI	CCCGC	1 cut(s)	1045
FauNDI	CATATG	3 cut(s)	174, 235, 1669
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	2 cut(s)	524, 1657
Fnu4HI	GCNGC	8 cut(s)	881, 1308, 1337, 1665, 1689, 1913, 2354, 2514
FriOI	GRGCYC	2 cut(s)	91, 942
Fsp4HI	GCNGC	8 cut(s)	881, 1308, 1337, 1665, 1689, 1913, 2354, 2514
FspBI	CTAG	6 cut(s)	116, 1427, 1611, 2171, 2274, 2573
FspI	TGCGCA	2 cut(s)	54, 336
GlaI	GCGC	2 cut(s)	54, 336
GluI	GCNGC	8 cut(s)	881, 1308, 1337, 1665, 1689, 1913, 2354, 2514
GsuI	CTGGAG	4 cut(s)	516, 1041, 1158, 2428
HaeIII	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2615
HapII	CCGG	5 cut(s)	302, 329, 435, 771, 2465
HhaI	GCGC	2 cut(s)	55, 337
Hin6I	GCGC	2 cut(s)	53, 335
HinP1I	GCGC	2 cut(s)	53, 335
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	95, 1533
HpaII	CCGG	5 cut(s)	302, 329, 435, 771, 2465
HphI	GGTGA	6 cut(s)	1315, 1457, 1883, 2089, 2441, 2623
Hpy166II	GTNNAC	8 cut(s)	62, 525, 1210, 1618, 1658, 1991, 2152, 2279
Hpy8I	GTNNAC	8 cut(s)	62, 525, 1210, 1618, 1658, 1991, 2152, 2279
HpyAV	CCTTC	8 cut(s)	466, 556, 677, 860, 1862, 2198, 2373, 2437
HpyCH4III	ACNGT	5 cut(s)	1084, 1207, 1289, 1988, 2313
HpyCH4IV	ACGT	3 cut(s)	1162, 1684, 1982
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 210, 341, 1282, 1685, 2234
HpyF3I	CTNAG	2 cut(s)	1470, 2036
HpySE526I	ACGT	3 cut(s)	1162, 1684, 1982
HspAI	GCGC	2 cut(s)	53, 335
KflI	GGGWCCC	1 cut(s)	589
KpnI	GGTACC	1 cut(s)	1032
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	577
LmnI	GCTCC	5 cut(s)	86, 235, 1267, 2062, 2494
Lsp1109I	GCAGC	8 cut(s)	867, 1294, 1348, 1676, 1700, 1924, 2365, 2525
LweI	GCATC	8 cut(s)	634, 724, 830, 1084, 1090, 1189, 1444, 1594
MabI	ACCWGGT	1 cut(s)	1620
MaeI	CTAG	6 cut(s)	116, 1427, 1611, 2171, 2274, 2573
MaeII	ACGT	3 cut(s)	1162, 1684, 1982
MaeIII	GTNAC	8 cut(s)	111, 238, 628, 793, 858, 2307, 2431, 2447
MfeI	CAATTG	3 cut(s)	243, 553, 1560
MflI	RGATCY	5 cut(s)	386, 571, 841, 923, 2174
MhlI	GDGCHC	4 cut(s)	91, 232, 942, 1212
MlsI	TGGCCA	2 cut(s)	48, 1864
MluNI	TGGCCA	2 cut(s)	48, 1864
MlyI	GAGTC	4 cut(s)	2371, 2419, 2557, 2578
MmeI	TCCRAC	4 cut(s)	926, 1117, 1948, 2504
Mox20I	TGGCCA	2 cut(s)	48, 1864
Mph1103I	ATGCAT	2 cut(s)	948, 1459
MreI	CGCCGGCG	1 cut(s)	434
MroNI	GCCGGC	1 cut(s)	434
MscI	TGGCCA	2 cut(s)	48, 1864
MseI	TTAA	5 cut(s)	468, 849, 1464, 2069, 2589
MslI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2438
Msp20I	TGGCCA	2 cut(s)	48, 1864
MspA1I	CMGCKG	1 cut(s)	1307
MspCI	CTTAAG	2 cut(s)	848, 1463
MspI	CCGG	5 cut(s)	302, 329, 435, 771, 2465
MspR9I	CCNGG	9 cut(s)	201, 302, 495, 594, 772, 1033, 1622, 2257, 2505
MunI	CAATTG	3 cut(s)	243, 553, 1560
MvaI	CCWGG	7 cut(s)	201, 495, 594, 1033, 1622, 2257, 2505
MwoI	GCNNNNNNNGC	6 cut(s)	178, 210, 341, 1282, 1685, 2234
NaeI	GCCGGC	1 cut(s)	436
NciI	CCSGG	2 cut(s)	302, 772
NcoI	CCATGG	2 cut(s)	1271, 2199
NdeI	CATATG	3 cut(s)	174, 235, 1669
NgoMIV	GCCGGC	1 cut(s)	434
NlaIV	GGNNCC	9 cut(s)	88, 388, 454, 590, 591, 1030, 1269, 2209, 2496
NmeAIII	GCCGAG	1 cut(s)	2532
NmuCI	GTSAC	5 cut(s)	111, 858, 2307, 2431, 2447
NsbI	TGCGCA	2 cut(s)	54, 336
NsiI	ATGCAT	2 cut(s)	948, 1459
NspI	RCATGY	1 cut(s)	1664
PdiI	GCCGGC	1 cut(s)	436
PfeI	GAWTC	6 cut(s)	23, 142, 310, 411, 1565, 2107
PflFI	GACNNNGTC	1 cut(s)	856
PkrI	GCNGC	8 cut(s)	882, 1309, 1338, 1666, 1690, 1914, 2355, 2515
PleI	GAGTC	4 cut(s)	2370, 2418, 2556, 2577
PpsI	GAGTC	4 cut(s)	2370, 2418, 2556, 2577
Ppu21I	YACGTR	2 cut(s)	1685, 1983
PpuMI	RGGWCCY	3 cut(s)	273, 589, 2207
PshBI	ATTAAT	1 cut(s)	2589
PsiI	TTATAA	1 cut(s)	18
Psp5II	RGGWCCY	3 cut(s)	273, 589, 2207
Psp6I	CCWGG	7 cut(s)	199, 493, 592, 1031, 1620, 2255, 2503
PspEI	GGTNACC	1 cut(s)	2447
PspGI	CCWGG	7 cut(s)	199, 493, 592, 1031, 1620, 2255, 2503
PspN4I	GGNNCC	9 cut(s)	88, 388, 454, 590, 591, 1030, 1269, 2209, 2496
PspPI	GGNCC	8 cut(s)	273, 589, 748, 1035, 1301, 2207, 2477, 2613
PspPPI	RGGWCCY	3 cut(s)	273, 589, 2207
PstNI	CAGNNNCTG	2 cut(s)	260, 575
PsuI	RGATCY	5 cut(s)	386, 571, 841, 923, 2174
PsyI	GACNNNGTC	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	1307
RsaI	GTAC	6 cut(s)	598, 1030, 1195, 1410, 1721, 1985
RsaNI	GTAC	6 cut(s)	597, 1029, 1194, 1409, 1720, 1984
RseI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2438
SaqAI	TTAA	5 cut(s)	468, 849, 1464, 2069, 2589
SatI	GCNGC	8 cut(s)	881, 1308, 1337, 1665, 1689, 1913, 2354, 2514
Sau96I	GGNCC	8 cut(s)	273, 589, 748, 1035, 1301, 2207, 2477, 2613
ScaI	AGTACT	1 cut(s)	1721
SchI	GAGTC	4 cut(s)	2371, 2419, 2557, 2578
ScrFI	CCNGG	9 cut(s)	201, 302, 495, 594, 772, 1033, 1622, 2257, 2505
SduI	GDGCHC	4 cut(s)	91, 232, 942, 1212
SexAI	ACCWGGT	1 cut(s)	1620
SfaNI	GCATC	8 cut(s)	634, 724, 830, 1084, 1090, 1189, 1444, 1594
SfcI	CTRYAG	2 cut(s)	261, 396
SgrAI	CRCCGGYG	1 cut(s)	434
SinI	GGWCC	5 cut(s)	273, 589, 1301, 2207, 2477
SmiMI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2438
SmlI	CTYRAG	6 cut(s)	695, 848, 1463, 1513, 2088, 2456
SmoI	CTYRAG	6 cut(s)	695, 848, 1463, 1513, 2088, 2456
SpeI	ACTAGT	2 cut(s)	115, 1610
SsiI	CCGC	4 cut(s)	621, 690, 1052, 2113
SspMI	CTAG	6 cut(s)	116, 1427, 1611, 2171, 2274, 2573
StyD4I	CCNGG	9 cut(s)	199, 300, 493, 592, 770, 1031, 1620, 2255, 2503
StyI	CCWWGG	3 cut(s)	1271, 2017, 2199
TaaI	ACNGT	5 cut(s)	1084, 1207, 1289, 1988, 2313
TaiI	ACGT	3 cut(s)	1165, 1687, 1985
TaqI	TCGA	3 cut(s)	1012, 1241, 2337
TatI	WGTACW	2 cut(s)	1193, 1719
TfiI	GAWTC	6 cut(s)	23, 142, 310, 411, 1565, 2107
Tru1I	TTAA	5 cut(s)	468, 849, 1464, 2069, 2589
Tru9I	TTAA	5 cut(s)	468, 849, 1464, 2069, 2589
TscAI	CASTG	3 cut(s)	232, 1212, 2316
TseFI	GTSAC	5 cut(s)	111, 858, 2307, 2431, 2447
TseI	GCWGC	8 cut(s)	880, 1307, 1336, 1664, 1688, 1912, 2353, 2513
Tsp45I	GTSAC	5 cut(s)	111, 858, 2307, 2431, 2447
TspDTI	ATGAA	6 cut(s)	1409, 1953, 2120, 2172, 2442, 2456
TspGWI	ACGGA	1 cut(s)	1544
TspRI	CASTG	3 cut(s)	232, 1212, 2316
Tth111I	GACNNNGTC	1 cut(s)	856
Vha464I	CTTAAG	2 cut(s)	848, 1463
VneI	GTGCAC	1 cut(s)	1208
VpaK11BI	GGWCC	5 cut(s)	273, 589, 1301, 2207, 2477
VspI	ATTAAT	1 cut(s)	2589
XagI	CCTNNNNNAGG	1 cut(s)	2502
XapI	RAATTY	4 cut(s)	1476, 1570, 1899, 2005
XceI	RCATGY	1 cut(s)	1664
XcmI	CCANNNNNNNNNTGG	2 cut(s)	656, 1724
XmiI	GTMKAC	2 cut(s)	524, 1657
XspI	CTAG	6 cut(s)	116, 1427, 1611, 2171, 2274, 2573
ZrmI	AGTACT	1 cut(s)	1721
Zsp2I	ATGCAT	2 cut(s)	948, 1459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.