pycom07g02300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002936
Physical Location & Seq
Forward (+)
1870347 .. 1871869
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02300.4

Sequence Viewer

Length: 651 bp
ATGGAGGGAAGTTTTGCTCATGAGCTCTACTCAGAAAGTTTAAGCCTATCAAAAATACAATTGGATGGTGAACCCAGTGCAAACAGTATAGAAAGTGATCGACAAGACCATGATAGGGTTGAATCGTGCGATGAAGATGGATCTTGGTATGCTTCTGACGATGAATTGCATGAACAATCTGCTTTGGGCCGGGAATGGCAGCGGAGACATAACCAATACCATACGACTGGTTACCGTGATGGTGTAATAGCGGGAAAAGAAGCTTCTTCACAAGAGGGATTTAATATTGGCTTTAAGAAATCGGTCCTTGTTGGGTACAACTGGGGTCTTGTCAGAGGTGTTACTAGTGCGCTGGCTTGCCTTCCAGATGGTTTAAAGGAGAAGTTGATTGAAACAGAAGAACAACGAAATGGATTTCAAAGATTGTTTGAATCTGTGCATTCTATTTCAACAAAAGATGCCCTCGGGTATTTGTACGATGATATGATAGCCAAAAAAGATAGAGAACAGAGTGAAATTTCTGATACTGCCGGTTCTCTTGAAGTTTGCTCGCCAGAGAAAATAGCACATGTTAGTGGCCTAGGCAATCACTTTGCAGAACTCCAGTCACTTCTTGTCAAGTGTCCTGCAGTTTACGTACATCTACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

217

Amino Acids

24.05

Weight (kDa)

4.9

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 202, 251
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 516
AfaI GTAC 3 cut(s) 317, 476, 639
AfiI CCNNNNNNNGG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 568
AgsI TTSAA 6 cut(s) 122, 392, 419, 431, 450, 542
AhlI ACTAGT 1 cut(s) 344
AluBI AGCT 2 cut(s) 25, 263
AluI AGCT 2 cut(s) 25, 263
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 187, 577
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 516
AspA2I CCTAGG 1 cut(s) 580
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 187, 304
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 304
AvrII CCTAGG 1 cut(s) 580
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 211
BccI CCATC 4 cut(s) 59, 131, 233, 362
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 199
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 2 cut(s) 345, 581
BfmI CTRYAG 1 cut(s) 627
BisI GCNGC 1 cut(s) 200
BlnI CCTAGG 1 cut(s) 580
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 2 cut(s) 187, 304
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 2 cut(s) 69, 331
BmsI GCATC 1 cut(s) 448
BmuI ACTGGG 2 cut(s) 69, 331
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 637
BsaJI CCNNGG 2 cut(s) 463, 580
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 4 cut(s) 75, 232, 326, 604
BseDI CCNNGG 2 cut(s) 463, 580
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 4 cut(s) 75, 232, 326, 604
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 2 cut(s) 189, 579
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 190, 531
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 2 cut(s) 189, 579
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 97, 140
BspACI CCGC 2 cut(s) 202, 251
BspANI GGCC 2 cut(s) 189, 579
BspCNI CTCAG 1 cut(s) 44
BspHI TCATGA 1 cut(s) 19
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 4 cut(s) 75, 232, 326, 604
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 2 cut(s) 463, 580
BssMI GATC 2 cut(s) 97, 140
BssT1I CCWWGG 1 cut(s) 580
Bst4CI ACNGT 3 cut(s) 86, 236, 648
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 3 cut(s) 354, 358, 551
BstDEI CTNAG 1 cut(s) 31
BstEII GGTNACC 1 cut(s) 230
BstF5I GGATG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 2 cut(s) 100, 143
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 2 cut(s) 97, 140
BstNSI RCATGY 1 cut(s) 572
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 627
BstSNI TACGTA 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 2 cut(s) 189, 579
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 354, 358, 551
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 2 cut(s) 187, 304
Csp6I GTAC 3 cut(s) 316, 475, 638
CviAII CATG 4 cut(s) 20, 110, 170, 569
CviJI RGCY 8 cut(s) 25, 45, 189, 263, 291, 356, 491, 579
CviKI_1 RGCY 8 cut(s) 25, 45, 189, 263, 291, 356, 491, 579
CviQI GTAC 3 cut(s) 316, 475, 638
DdeI CTNAG 1 cut(s) 31
DpnI GATC 2 cut(s) 99, 142
DpnII GATC 2 cut(s) 97, 140
DraI TTTAAA 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 25
Eco105I TACGTA 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 464
Eco91I GGTNACC 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 4 cut(s) 23, 113, 173, 572
FaiI YATR 9 cut(s) 21, 89, 111, 150, 171, 210, 222, 485, 570
FatI CATG 4 cut(s) 19, 109, 169, 568
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 2 cut(s) 345, 581
GlaI GCGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 2 cut(s) 189, 579
HapII CCGG 2 cut(s) 190, 531
HhaI GCGC 1 cut(s) 352
Hin1II CATG 4 cut(s) 23, 113, 173, 572
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 2 cut(s) 122, 431
HpaII CCGG 2 cut(s) 190, 531
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 71, 634
Hpy188I TCNGA 4 cut(s) 34, 157, 335, 523
Hpy188III TCNNGA 3 cut(s) 20, 365, 539
Hpy8I GTNNAC 2 cut(s) 71, 634
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 3 cut(s) 86, 236, 648
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 5 cut(s) 80, 169, 439, 596, 629
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 4 cut(s) 23, 113, 173, 572
HspAI GCGC 1 cut(s) 350
Kzo9I GATC 2 cut(s) 97, 140
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 345, 581
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 3 cut(s) 230, 340, 606
MalI GATC 2 cut(s) 99, 142
MboI GATC 2 cut(s) 97, 140
MboII GAAGA 3 cut(s) 146, 258, 410
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 59, 164, 516
MnlI CCTC 3 cut(s) 268, 329, 473
MseI TTAA 4 cut(s) 41, 282, 294, 374
MslI CAYNNNNRTG 1 cut(s) 573
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 2 cut(s) 190, 531
MspR9I CCNGG 1 cut(s) 191
MunI CAATTG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 439
NciI CCSGG 1 cut(s) 191
NdeII GATC 2 cut(s) 97, 140
NlaIII CATG 4 cut(s) 23, 113, 173, 572
NmuCI GTSAC 1 cut(s) 606
NspI RCATGY 1 cut(s) 572
PagI TCATGA 1 cut(s) 19
PciI ACATGT 1 cut(s) 568
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 2 cut(s) 122, 431
PkrI GCNGC 1 cut(s) 201
Ppu21I YACGTR 1 cut(s) 637
PscI ACATGT 1 cut(s) 568
Psp124BI GAGCTC 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 230
PspPI GGNCC 2 cut(s) 187, 304
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 3 cut(s) 317, 476, 639
RsaNI GTAC 3 cut(s) 316, 475, 638
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 41, 282, 294, 374
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 2 cut(s) 97, 140
Sau96I GGNCC 2 cut(s) 187, 304
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 27
SetI ASST 4 cut(s) 27, 265, 340, 639
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 573
SnaBI TACGTA 1 cut(s) 637
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 3 cut(s) 59, 164, 516
SsiI CCGC 2 cut(s) 202, 251
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 345, 581
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 3 cut(s) 86, 236, 648
TaiI ACGT 1 cut(s) 639
TaqI TCGA 1 cut(s) 100
TaqII GACCGA 1 cut(s) 292
TasI AATT 3 cut(s) 59, 164, 516
TfiI GAWTC 2 cut(s) 122, 431
Tru1I TTAA 4 cut(s) 41, 282, 294, 374
Tru9I TTAA 4 cut(s) 41, 282, 294, 374
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 606
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 606
TspDTI ATGAA 3 cut(s) 147, 177, 186
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 1 cut(s) 516
XceI RCATGY 1 cut(s) 572
XmaJI CCTAGG 1 cut(s) 580
XspI CTAG 2 cut(s) 345, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.