Rorug05G0213200

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002936
Physical Location & Seq
Forward (+)
21876250 .. 21876839
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0213200.1

Sequence Viewer

Length: 318 bp
ATGGCGGTTTCAAGTTCATTAACAACCATTAATTCATCCAACATAGGTTTTCGGCTTTTGAAGAAACAAGGTTGGAAAGAGGGAACTGGTCTTGGGATTTCTGAGCAGGGAAGGTTGGAGCCTGTAGCAACCTACGTGAAGAATAATAAACTGGGCCTGGGAGCAGACAAATTACAGAAGAAGAAGCTGCGTTCAGAAACCAAGGAATCTCGACTCGCAGCAAAGAAGAGGACGAAGATACAGGAGTTGGAAAAAAGATTGCAAGAGAAGGAATTTGAGCGCGCCTTTTGTAGGGAGTTCTGGCCAGATAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

10.0

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 13 - 56 1.8e-17 G-patch domain
G-patch_2 PF12656 14 - 58 4.1e-06 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 2 cut(s) 12, 61
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AoxI GGCC 2 cut(s) 154, 302
ApeKI GCWGC 2 cut(s) 187, 218
ApoI RAATTY 1 cut(s) 272
AseI ATTAAT 1 cut(s) 30
AspLEI GCGC 2 cut(s) 282, 284
AspS9I GGNCC 1 cut(s) 154
BaeI ACNNNNGTAYC 2 cut(s) 230, 263
BalI TGGCCA 1 cut(s) 304
BbvI GCAGC 2 cut(s) 174, 230
BciT130I CCWGG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 188, 219
BlsI GCNGC 2 cut(s) 189, 220
Bme1390I CCNGG 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 157, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 91, 156
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 157, 201
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 91, 156
BsePI GCGCGC 1 cut(s) 280
BseXI GCAGC 2 cut(s) 174, 230
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 2 cut(s) 156, 304
BslI CCNNNNNNNGG 1 cut(s) 291
BsnI GGCC 2 cut(s) 156, 304
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 156, 304
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 91, 156
BssECI CCNNGG 2 cut(s) 157, 201
BssHII GCGCGC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 102
BstENI CCTNNNNNAGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 2 cut(s) 282, 284
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 174, 230
BsuRI GGCC 2 cut(s) 156, 304
BtsCI GGATG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 2 cut(s) 282, 284
Cfr13I GGNCC 1 cut(s) 154
CviJI RGCY 5 cut(s) 55, 121, 156, 187, 304
CviKI_1 RGCY 5 cut(s) 55, 121, 156, 187, 304
DdeI CTNAG 1 cut(s) 102
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 201
EcoNI CCTNNNNNAGG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaiI YATR 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 188, 219
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 188, 219
GlaI GCGC 2 cut(s) 281, 283
GluI GCNGC 2 cut(s) 188, 219
HaeIII GGCC 2 cut(s) 156, 304
HhaI GCGC 2 cut(s) 282, 284
Hin6I GCGC 2 cut(s) 280, 282
HinP1I GCGC 2 cut(s) 280, 282
HinfI GANTC 2 cut(s) 206, 213
Hpy188I TCNGA 2 cut(s) 103, 196
Hpy188III TCNNGA 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 105, 262
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 135
HspAI GCGC 2 cut(s) 280, 282
LmnI GCTCC 2 cut(s) 118, 161
LpnPI CCDG 8 cut(s) 72, 92, 135, 137, 143, 170, 227, 286
Lsp1109I GCAGC 2 cut(s) 174, 230
MaeII ACGT 1 cut(s) 135
MboII GAAGA 6 cut(s) 73, 151, 190, 193, 238, 247
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 3 cut(s) 31, 170, 272
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 4 cut(s) 53, 63, 96, 228
MnlI CCTC 2 cut(s) 73, 222
Mox20I TGGCCA 1 cut(s) 304
MscI TGGCCA 1 cut(s) 304
MseI TTAA 2 cut(s) 20, 30
Msp20I TGGCCA 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 1 cut(s) 282
NlaIV GGNNCC 1 cut(s) 120
PauI GCGCGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 189, 220
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Ppu21I YACGTR 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 154
PteI GCGCGC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 20, 30
SatI GCNGC 2 cut(s) 188, 219
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 158
SetI ASST 6 cut(s) 49, 73, 116, 134, 138, 189
SfcI CTRYAG 1 cut(s) 123
Sse9I AATT 3 cut(s) 31, 170, 272
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 211
TasI AATT 3 cut(s) 31, 170, 272
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 20, 30
Tru9I TTAA 2 cut(s) 20, 30
TseI GCWGC 2 cut(s) 187, 218
TspDTI ATGAA 2 cut(s) 6, 24
VspI ATTAAT 1 cut(s) 30
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.