Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002936

Physical Location & Seq

Genomic Coordinates Reverse (-)

4988607 .. 4990100

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0029500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAATGTATATTCAATTCATTTTACATTTTTCTCGACCTGTGAATTGTATGCAGGTTTCGCCTCGACATTGCTAGAAAATAAAAATCATCATGATTTTGCTCTTAAATGTGATAGTGATGGAAAGACAGTCTTGCATTTGTTAGCTCAAAAGCCTTCAGCATTTACCGTGGGAACTCCCGCAGGAAGTACAGCCCTTAAATTACTTGAAGCCGTCTTGCGCATACTAGAAAAAAATTCAATATTCACTAGTGAATTCAGACAGCTAATAAGATGCCCTTCACATGTGTTATTCGATGCAGTGAAATCAGAAAATTCTGAGTTTGTAGTTAAGCTTATTGAGATTTGTCCTAGTTTGATATGGGAAACAAATGACAGAAATTGGACCATAATACATGCAGCAGTTTCGCATCGTGATGAGACTATCTTCAATTTACTACAAGAGTTTGGTTTTTTCAAGGATGTGATAGGGGACTTCAGAGATAGCAAAAATGGTGATACATTACTTCACCTAGCTGCAAGATTAGCTCCGACCAGTCAATTGGACAAACTACCTGGAGCAGCTTTTCAAATGCAGCGGGAACTATTATGGTTCGAGTTAGTTAATTACTTGATCAAAGCAACCCTTGGCATGCAGAAAGTGAAGAACACTGTACAGGCGGCAGTTACAGAGGTGAGAAATGGTCTCCCCCAAACATTTCAAGAAGGAAGCGCCGCAGAAGTGAGCAGGTTGGCTCCACCGGGTGGCGATTCACATCATGAAGCCACTTCAGCTGATCAACAACGCAGTGCATCTCAACAAGGAAATGCGACAGAATCTGAAGAAGACAAAACGCCTCAGGAGTTATTCACTATTCAGCATAAATTACTGCTGAAAGAAGGACGAAAGTGGATGAATGGGACAGCGCAATCGTGTACAGTTGTATCAACTCTTATTGCTGGTGCTTTATTTGCTGCAGGGATCGCTGTCACTCTTGGAGGAAATAAAGGAACTTCGGATCACAACTTCCAAAAAGTGGTTTATCGGATTTTTATCATATCAGATGCAATGGCCTTTTTGTTTGCCTTGGCTGCAATACTAACCTTCTTGTCTATCCTTACTTCACGTTATGCTGAAAGAGATTTTCTTGAATCCTTACCTTCAAAGTTGAGAGTGGGACTTGGATTACTCTTCTGTTCTATTATAACGATGATGGTGGCATTCTGCTCGGCTTTCATTATTGCTTACAGTGTTGAAGACTTACTCCCCTATCTAATCATTGAATACACGGTTCTGATGGTGCTTCTATGTCTTTACATGGATCGTTCCCTTTTGACTTACATTCTCAAGTCCAGATTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_11 AAA_12 Aquarius_N

Protein Analysis

447

Amino Acids

49.74

Weight (kDa)

6.19

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	97 - 174	9.6e-06	Ankyrin repeats (3 copies)
PGG	PF13962	296 - 406	1.3e-17	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34570 AT3G15750 AT3G15750 AT3G15750
fragaria_vesca	FvH4_3g19550 FvH4_5g29020
malus_domestica	MD00G1188600.v1.1 MD02G1294600.v1.1 MD07G1031900.v1.1
prunus_persica	Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1
pyrus_communis	pycom07g02300
rosa_chinensis	RchiOBHm_Chr1g0319701 RchiOBHm_Chr7g0218601
rosa_multiflora	Rmu_sc0002539.1_g000112
rosa_roxburghii	Rroxscaffold_3G00240760 Rroxscaffold_4G00328180
rosa_rugosa	Rorug01G0029500 Rorug01G0029600 Rorug05G0213200 Rorug05G0391300 Rorug07G0178700
rosa_samantha	Rh1AG041400 Rh1BG038700 Rh1CG042300 Rh1DG027300 Rh7AG319800 Rh7BG311800 Rh7CG336700 Rh7DG163300 Rh7DG318800
rosa_wichuraiana	Rw1G003440 Rw7G027240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1184
Acc16I	TGCGCA	1 cut(s)	221
Acc36I	ACCTGC	2 cut(s)	44, 717
AccB7I	CCANNNNNTGG	2 cut(s)	743, 1015
AciI	CCGC	4 cut(s)	180, 577, 659, 714
AclWI	GGATC	3 cut(s)	968, 1005, 1308
AcsI	RAATTY	3 cut(s)	235, 254, 313
AcuI	CTGAAG	4 cut(s)	141, 460, 753, 840
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	3 cut(s)	190, 654, 916
AfiI	CCNNNNNNNGG	2 cut(s)	743, 1015
AflIII	ACRYGT	1 cut(s)	283
AhlI	ACTAGT	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	7 cut(s)	146, 265, 334, 515, 527, 563, 773
AluI	AGCT	7 cut(s)	146, 265, 334, 515, 527, 563, 773
Alw26I	GTCTC	2 cut(s)	413, 689
AlwI	GGATC	3 cut(s)	968, 1005, 1308
AlwNI	CAGNNNCTG	1 cut(s)	818
AoxI	GGCC	1 cut(s)	1050
ApeKI	GCWGC	6 cut(s)	398, 515, 560, 574, 953, 1070
ApoI	RAATTY	3 cut(s)	235, 254, 313
AspLEI	GCGC	3 cut(s)	222, 713, 907
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	3 cut(s)	500, 506, 685
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	837
BaeI	ACNNNNGTAYC	2 cut(s)	906, 939
BbsI	GAAGAC	2 cut(s)	831, 1242
BbvI	GCAGC	6 cut(s)	410, 502, 572, 586, 940, 1057
BccI	CCATC	3 cut(s)	113, 1186, 1270
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	4 cut(s)	387, 421, 1188, 1222
BciT130I	CCWGG	1 cut(s)	555
BclI	TGATCA	2 cut(s)	612, 775
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	413, 689
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	5 cut(s)	74, 227, 249, 351, 512
BfmI	CTRYAG	1 cut(s)	954
BfoI	RGCGCY	1 cut(s)	714
BfuAI	ACCTGC	2 cut(s)	44, 717
BisI	GCNGC	8 cut(s)	399, 516, 561, 575, 660, 714, 954, 1071
BlsI	GCNGC	8 cut(s)	400, 517, 562, 576, 661, 715, 955, 1072
Bme1390I	CCNGG	2 cut(s)	555, 741
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	735
BmrFI	CCNGG	2 cut(s)	555, 741
BmsI	GCATC	5 cut(s)	263, 286, 418, 800, 1033
BpiI	GAAGAC	2 cut(s)	831, 1242
BpmI	CTGGAG	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	1310
BpuMI	CCSGG	1 cut(s)	741
BsaBI	GATNNNNATC	2 cut(s)	753, 1031
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	3 cut(s)	168, 625, 1065
Bsc4I	CCNNNNNNNGG	2 cut(s)	743, 1015
Bse1I	ACTGG	1 cut(s)	534
Bse21I	CCTNAGG	1 cut(s)	837
Bse3DI	GCAATG	2 cut(s)	68, 1053
Bse8I	GATNNNNATC	2 cut(s)	753, 1031
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	168, 625, 1065
BseGI	GGATG	2 cut(s)	466, 897
BseJI	GATNNNNATC	2 cut(s)	753, 1031
BseLI	CCNNNNNNNGG	2 cut(s)	743, 1015
BseMI	GCAATG	2 cut(s)	68, 1053
BseMII	CTCAG	2 cut(s)	309, 851
BseNI	ACTGG	1 cut(s)	534
BseXI	GCAGC	6 cut(s)	410, 502, 572, 586, 940, 1057
BshFI	GGCC	1 cut(s)	1052
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	3 cut(s)	485, 913, 1170
BslI	CCNNNNNNNGG	2 cut(s)	743, 1015
BsmAI	GTCTC	2 cut(s)	413, 689
BsmFI	GGGAC	3 cut(s)	485, 913, 1170
BsmI	GAATGC	1 cut(s)	1199
BsnI	GGCC	1 cut(s)	1052
Bso31I	GGTCTC	1 cut(s)	689
Bsp1407I	TGTACA	2 cut(s)	652, 914
Bsp143I	GATC	5 cut(s)	612, 775, 960, 997, 1300
BspACI	CCGC	4 cut(s)	180, 577, 659, 714
BspANI	GGCC	1 cut(s)	1052
BspCNI	CTCAG	2 cut(s)	310, 850
BspHI	TCATGA	2 cut(s)	91, 757
BspLI	GGNNCC	1 cut(s)	735
BspMAI	CTGCAG	1 cut(s)	958
BspMI	ACCTGC	2 cut(s)	44, 717
BspPI	GGATC	3 cut(s)	968, 1005, 1308
BspTNI	GGTCTC	1 cut(s)	689
BsrDI	GCAATG	2 cut(s)	68, 1053
BsrGI	TGTACA	2 cut(s)	652, 914
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	168, 625, 1065
BssMI	GATC	5 cut(s)	612, 775, 960, 997, 1300
BssT1I	CCWWGG	2 cut(s)	625, 1065
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	6 cut(s)	130, 169, 652, 919, 1229, 1270
Bst6I	CTCTTC	1 cut(s)	1175
BstAUI	TGTACA	2 cut(s)	652, 914
BstC8I	GCNNGC	1 cut(s)	632
BstDEI	CTNAG	3 cut(s)	318, 837, 1341
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	466, 897
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	3 cut(s)	222, 713, 907
BstKTI	GATC	5 cut(s)	615, 778, 963, 1000, 1303
BstMAI	GTCTC	2 cut(s)	413, 689
BstMBI	GATC	5 cut(s)	612, 775, 960, 997, 1300
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 524, 770, 950, 962, 1070
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	3 cut(s)	287, 398, 634
BstSCI	CCNGG	2 cut(s)	553, 739
BstSFI	CTRYAG	1 cut(s)	954
BstV1I	GCAGC	6 cut(s)	410, 502, 572, 586, 940, 1057
BstV2I	GAAGAC	2 cut(s)	831, 1242
BstXI	CCANNNNNNTGG	1 cut(s)	541
Bsu36I	CCTNAGG	1 cut(s)	837
BsuRI	GGCC	1 cut(s)	1052
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	466, 897
BtsI	GCAGTG	2 cut(s)	306, 793
BtsIMutI	CAGTG	4 cut(s)	306, 648, 793, 1234
BveI	ACCTGC	2 cut(s)	44, 717
Cac8I	GCNNGC	1 cut(s)	632
CaiI	CAGNNNCTG	1 cut(s)	818
CciI	TCATGA	2 cut(s)	91, 757
CfoI	GCGC	3 cut(s)	222, 713, 907
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	3 cut(s)	189, 653, 915
CviAII	CATG	6 cut(s)	92, 284, 395, 631, 758, 1297
CviQI	GTAC	3 cut(s)	189, 653, 915
DdeI	CTNAG	3 cut(s)	318, 837, 1341
DpnI	GATC	5 cut(s)	614, 777, 962, 999, 1302
DpnII	GATC	5 cut(s)	612, 775, 960, 997, 1300
DraIII	CACNNNGTG	1 cut(s)	743
Eam1104I	CTCTTC	1 cut(s)	1175
EarI	CTCTTC	1 cut(s)	1175
Eco130I	CCWWGG	2 cut(s)	625, 1065
Eco31I	GGTCTC	1 cut(s)	689
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	4 cut(s)	141, 460, 753, 840
Eco81I	CCTNAGG	1 cut(s)	837
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	625, 1065
ErhI	CCWWGG	2 cut(s)	625, 1065
FaeI	CATG	6 cut(s)	95, 287, 398, 634, 761, 1300
FalI	AAGNNNNNCTT	6 cut(s)	116, 148, 262, 294, 609, 641
FaqI	GGGAC	3 cut(s)	485, 913, 1170
FatI	CATG	6 cut(s)	91, 283, 394, 630, 757, 1296
FauI	CCCGC	2 cut(s)	187, 570
FbaI	TGATCA	2 cut(s)	612, 775
Fnu4HI	GCNGC	8 cut(s)	399, 516, 561, 575, 660, 714, 954, 1071
FokI	GGATG	2 cut(s)	473, 904
Fsp4HI	GCNGC	8 cut(s)	399, 516, 561, 575, 660, 714, 954, 1071
FspBI	CTAG	5 cut(s)	74, 227, 249, 351, 512
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	3 cut(s)	221, 712, 906
GluI	GCNGC	8 cut(s)	399, 516, 561, 575, 660, 714, 954, 1071
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	1 cut(s)	1052
HapII	CCGG	1 cut(s)	740
HhaI	GCGC	3 cut(s)	222, 713, 907
Hin1II	CATG	6 cut(s)	95, 287, 398, 634, 761, 1300
Hin6I	GCGC	3 cut(s)	220, 711, 905
HinP1I	GCGC	3 cut(s)	220, 711, 905
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	4 cut(s)	749, 815, 1130, 1335
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	3 cut(s)	500, 506, 685
Hpy166II	GTNNAC	1 cut(s)	915
Hpy188III	TCNNGA	8 cut(s)	34, 92, 413, 701, 758, 839, 1127, 1332
Hpy8I	GTNNAC	1 cut(s)	915
HpyAV	CCTTC	6 cut(s)	165, 288, 698, 872, 1093, 1149
HpyCH4III	ACNGT	6 cut(s)	130, 169, 652, 919, 1229, 1270
HpyCH4IV	ACGT	1 cut(s)	1105
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 524, 770, 950, 962, 1070
HpyF3I	CTNAG	3 cut(s)	318, 837, 1341
HpySE526I	ACGT	1 cut(s)	1105
Hsp92II	CATG	6 cut(s)	95, 287, 398, 634, 761, 1300
HspAI	GCGC	3 cut(s)	220, 711, 905
Ksp22I	TGATCA	2 cut(s)	612, 775
Kzo9I	GATC	5 cut(s)	612, 775, 960, 997, 1300
LmnI	GCTCC	3 cut(s)	532, 557, 739
Lsp1109I	GCAGC	6 cut(s)	410, 502, 572, 586, 940, 1057
LweI	GCATC	5 cut(s)	263, 286, 418, 800, 1033
MaeI	CTAG	5 cut(s)	74, 227, 249, 351, 512
MaeII	ACGT	1 cut(s)	1105
MaeIII	GTNAC	2 cut(s)	664, 967
MalI	GATC	5 cut(s)	614, 777, 962, 999, 1302
MboI	GATC	5 cut(s)	612, 775, 960, 997, 1300
MboII	GAAGA	6 cut(s)	418, 655, 833, 836, 1162, 1247
MfeI	CAATTG	1 cut(s)	539
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	4 cut(s)	73, 664, 846, 971
MseI	TTAA	4 cut(s)	105, 198, 330, 603
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	577, 773
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	2 cut(s)	555, 741
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	1199
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	6 cut(s)	59, 524, 770, 950, 962, 1070
NciI	CCSGG	1 cut(s)	741
NdeII	GATC	5 cut(s)	612, 775, 960, 997, 1300
NlaIII	CATG	6 cut(s)	95, 287, 398, 634, 761, 1300
NlaIV	GGNNCC	1 cut(s)	735
NmeAIII	GCCGAG	1 cut(s)	1187
NmuCI	GTSAC	1 cut(s)	967
NsbI	TGCGCA	1 cut(s)	221
NspI	RCATGY	3 cut(s)	287, 398, 634
PaeI	GCATGC	1 cut(s)	634
PagI	TCATGA	2 cut(s)	91, 757
PciI	ACATGT	1 cut(s)	283
PctI	GAATGC	1 cut(s)	1199
PfeI	GAWTC	4 cut(s)	749, 815, 1130, 1335
PflMI	CCANNNNNTGG	2 cut(s)	743, 1015
PkrI	GCNGC	8 cut(s)	400, 517, 562, 576, 661, 715, 955, 1072
PscI	ACATGT	1 cut(s)	283
PsiI	TTATAA	1 cut(s)	1184
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	1 cut(s)	735
PspPI	GGNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	958
PstNI	CAGNNNCTG	1 cut(s)	818
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	3 cut(s)	190, 654, 916
RsaNI	GTAC	3 cut(s)	189, 653, 915
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	105, 198, 330, 603
SatI	GCNGC	8 cut(s)	399, 516, 561, 575, 660, 714, 954, 1071
Sau3AI	GATC	5 cut(s)	612, 775, 960, 997, 1300
Sau96I	GGNCC	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	555, 741
SfaNI	GCATC	5 cut(s)	263, 286, 418, 800, 1033
SfcI	CTRYAG	1 cut(s)	954
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	1325
SmoI	CTYRAG	1 cut(s)	1325
SpeI	ACTAGT	1 cut(s)	248
SphI	GCATGC	1 cut(s)	634
SsiI	CCGC	4 cut(s)	180, 577, 659, 714
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	5 cut(s)	74, 227, 249, 351, 512
StyD4I	CCNGG	2 cut(s)	553, 739
StyI	CCWWGG	2 cut(s)	625, 1065
TaaI	ACNGT	6 cut(s)	130, 169, 652, 919, 1229, 1270
TaiI	ACGT	1 cut(s)	1108
TaqI	TCGA	4 cut(s)	35, 65, 294, 594
TatI	WGTACW	3 cut(s)	188, 652, 914
TauI	GCSGC	2 cut(s)	662, 716
TfiI	GAWTC	4 cut(s)	749, 815, 1130, 1335
Tru1I	TTAA	4 cut(s)	105, 198, 330, 603
Tru9I	TTAA	4 cut(s)	105, 198, 330, 603
TscAI	CASTG	4 cut(s)	306, 655, 793, 1234
TseFI	GTSAC	1 cut(s)	967
TseI	GCWGC	6 cut(s)	398, 515, 560, 574, 953, 1070
Tsp45I	GTSAC	1 cut(s)	967
TspDTI	ATGAA	5 cut(s)	8, 17, 774, 908, 1204
TspRI	CASTG	4 cut(s)	306, 655, 793, 1234
Van91I	CCANNNNNTGG	2 cut(s)	743, 1015
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	3 cut(s)	235, 254, 313
XceI	RCATGY	3 cut(s)	287, 398, 634
XspI	CTAG	5 cut(s)	74, 227, 249, 351, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.