MD07G1031900.v1.1

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0002936
Physical Location & Seq
Forward (+)
2595121 .. 2597879
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1031900.v1.1.491

Sequence Viewer

Length: 531 bp
ATGAAGATGGATCTTGGTATGCTTCTGATGATGAATTGCATGAACAATCTGCTTTGGGCCGGGAATGGCAGCGGAGACATAACCAATACCATACGGTTGTTGACAACTGGTTACCGTGATGGTGTAATAGCGGGAAAAGAAGCTTCTTCACAAGAGGGATTTAATATTGGCTTTAAGAAATCAGTCCTTGTTGGGTACAACTGGGGTCTTGTCAGAGGTGTTACTAGTGCGCTGGCTTGCCTTCCAGATGGTTTAAAGGAGAAGTTGATTGAAACAGAAGAACAACGAAATGGATTTCAAAGATTGTTTGAATTAGTGCATTCTATGTCAACAAAAGATGCCCTCGGGTATTTGTACGATGATATGATAGCCAAAAAAGATAGAGAACAGAGTGAAATTTCTGATACTAGCGGTTCTCTTGAAGTTGGCTCGCCAGAGAAAATAGCACATGTTAGCGGCCTAGGCAGTCAATTTGCAGAACTCCAGTCACTTCTTGTCAAGTGTCCTGCAATTAACGTACATCTACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

177

Amino Acids

19.19

Weight (kDa)

5.39

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 37 - 74 2e-10 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 72, 131, 411, 456
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 396
AfaI GTAC 3 cut(s) 197, 356, 519
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 4 cut(s) 272, 299, 311, 422
AhlI ACTAGT 1 cut(s) 224
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 2 cut(s) 57, 457
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 396
AspA2I CCTAGG 1 cut(s) 460
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 344
AvrII CCTAGG 1 cut(s) 460
BbvI GCAGC 1 cut(s) 81
BccI CCATC 2 cut(s) 113, 242
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 69
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 225, 408, 461
BisI GCNGC 2 cut(s) 70, 457
BlnI CCTAGG 1 cut(s) 460
BlsI GCNGC 2 cut(s) 71, 458
Bme1390I CCNGG 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 343, 460
Bse1I ACTGG 3 cut(s) 112, 206, 484
BseDI CCNNGG 2 cut(s) 343, 460
BseNI ACTGG 3 cut(s) 112, 206, 484
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 2 cut(s) 59, 459
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 2 cut(s) 59, 459
BsoBI CYCGRG 1 cut(s) 344
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 4 cut(s) 72, 131, 411, 456
BspANI GGCC 2 cut(s) 59, 459
BspPI GGATC 1 cut(s) 18
BsrI ACTGG 3 cut(s) 112, 206, 484
BssECI CCNNGG 2 cut(s) 343, 460
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 460
Bst4CI ACNGT 3 cut(s) 96, 116, 528
BstC8I GCNNGC 3 cut(s) 234, 238, 431
BstEII GGTNACC 1 cut(s) 110
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 2 cut(s) 59, 459
Cac8I GCNNGC 3 cut(s) 234, 238, 431
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 3 cut(s) 196, 355, 518
CviAII CATG 2 cut(s) 40, 449
CviJI RGCY 7 cut(s) 59, 143, 171, 236, 371, 429, 459
CviKI_1 RGCY 7 cut(s) 59, 143, 171, 236, 371, 429, 459
CviQI GTAC 3 cut(s) 196, 355, 518
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraI TTTAAA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 344
Eco91I GGTNACC 1 cut(s) 110
EcoO65I GGTNACC 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 2 cut(s) 43, 452
FaiI YATR 7 cut(s) 20, 41, 80, 92, 326, 365, 450
FatI CATG 2 cut(s) 39, 448
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 70, 457
Fsp4HI GCNGC 2 cut(s) 70, 457
FspBI CTAG 3 cut(s) 225, 408, 461
GlaI GCGC 1 cut(s) 231
GluI GCNGC 2 cut(s) 70, 457
GsuI CTGGAG 1 cut(s) 467
HaeIII GGCC 2 cut(s) 59, 459
HapII CCGG 1 cut(s) 60
HhaI GCGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 43, 452
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 2 cut(s) 102, 330
HindII GTYRAC 2 cut(s) 102, 330
HindIII AAGCTT 1 cut(s) 141
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 102, 330
Hpy188I TCNGA 3 cut(s) 27, 215, 403
Hpy188III TCNNGA 2 cut(s) 245, 419
Hpy8I GTNNAC 2 cut(s) 102, 330
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 3 cut(s) 96, 116, 528
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 4 cut(s) 39, 319, 476, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 2 cut(s) 43, 452
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 73, 93, 187, 218, 258, 447, 497, 519
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 225, 408, 461
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 3 cut(s) 110, 220, 486
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 16, 138, 290
MflI RGATCY 1 cut(s) 10
MluCI AATT 5 cut(s) 34, 311, 396, 470, 510
MnlI CCTC 3 cut(s) 148, 209, 353
MseI TTAA 4 cut(s) 162, 174, 254, 513
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 462
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 43, 452
NmuCI GTSAC 1 cut(s) 486
NspI RCATGY 1 cut(s) 452
PciI ACATGT 1 cut(s) 448
PctI GAATGC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 71, 458
PscI ACATGT 1 cut(s) 448
PspEI GGTNACC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 3 cut(s) 197, 356, 519
RsaNI GTAC 3 cut(s) 196, 355, 518
SaqAI TTAA 4 cut(s) 162, 174, 254, 513
SatI GCNGC 2 cut(s) 70, 457
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 61
SetI ASST 3 cut(s) 145, 220, 519
SfaNI GCATC 1 cut(s) 328
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 5 cut(s) 34, 311, 396, 470, 510
SsiI CCGC 4 cut(s) 72, 131, 411, 456
SspI AATATT 1 cut(s) 166
SspMI CTAG 3 cut(s) 225, 408, 461
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 3 cut(s) 96, 116, 528
TaiI ACGT 1 cut(s) 519
TasI AATT 5 cut(s) 34, 311, 396, 470, 510
TauI GCSGC 1 cut(s) 459
Tru1I TTAA 4 cut(s) 162, 174, 254, 513
Tru9I TTAA 4 cut(s) 162, 174, 254, 513
TseFI GTSAC 1 cut(s) 486
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 486
TspDTI ATGAA 3 cut(s) 17, 47, 56
XapI RAATTY 1 cut(s) 396
XceI RCATGY 1 cut(s) 452
XmaJI CCTAGG 1 cut(s) 460
XspI CTAG 3 cut(s) 225, 408, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.