Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002936

Physical Location & Seq

Genomic Coordinates Forward (+)

3105527 .. 3108976

Gene Structure 3450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G029400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAGGGCCGTTTTGCTGATGAGCTCTACTCAGAAAGTCTACAGCTATCAAAACTACAATTGGATCCTATATCCAATGCGAACAGTGAACAAAGTAATTTACGTGACCTTGATAGGGTTGAGTTGTGTCGTGGAGATGGTTCTTGTGATGGTTTTTCTGATGAATTAGATGACACATCTGAGGTGACAGGGGAATGGATGAAGATAGAGGAGAAAACAAGATATAACCAACACCATACGGTGGGTTACCGTGAGGGTGTTATAGCAGGAAAAGAAGCTTCTTCGCAAGAGGGATTCAATATCGGCTTTAAGCAATCGGTCCTTGTTGGGTACAACTGGGGTCTTGTCAGAGGTGTTACAAGTGCTTTGGCTAACCTTCCAGATGGTTTAAGGGAGAAGTTGATTGAAACAGAAGACCAAATAACTGGATTGCAGGGATTGTATGAATCTGTGCATTCTCTTTCAACAACAGATGCCCTTAGATTATTTAATGATGAAATCATGGACAAAAAAGCTGGAGAACAGAGTGAGAATGCTGACACCAGTTCCCTTGAAGCTGGTTTGCCAGAGCAAATACCAGACCGTAGTGGTCTAAGAAATCACTTTGCAGAACTACGTTCACTTCTACTTGAATCTCCTGCAATTAAAGTACATCTAGATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yae1_N

Protein Analysis

222

Amino Acids

24.56

Weight (kDa)

4.58

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34570 AT3G15750 AT3G15750 AT3G15750
fragaria_vesca	FvH4_3g19550 FvH4_5g29020
malus_domestica	MD00G1188600.v1.1 MD02G1294600.v1.1 MD07G1031900.v1.1
prunus_persica	Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1
pyrus_communis	pycom07g02300
rosa_chinensis	RchiOBHm_Chr1g0319701 RchiOBHm_Chr7g0218601
rosa_multiflora	Rmu_sc0002539.1_g000112
rosa_roxburghii	Rroxscaffold_3G00240760 Rroxscaffold_4G00328180
rosa_rugosa	Rorug01G0029500 Rorug01G0029600 Rorug05G0213200 Rorug05G0391300 Rorug07G0178700
rosa_samantha	Rh1AG041400 Rh1BG038700 Rh1CG042300 Rh1DG027300 Rh7AG319800 Rh7BG311800 Rh7CG336700 Rh7DG163300 Rh7DG318800
rosa_wichuraiana	Rw1G003440 Rw7G027240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	40
AclWI	GGATC	2 cut(s)	59, 72
AfaI	GTAC	2 cut(s)	332, 651
AfiI	CCNNNNNNNGG	2 cut(s)	115, 241
AgsI	TTSAA	5 cut(s)	298, 407, 465, 554, 632
AluBI	AGCT	5 cut(s)	25, 46, 278, 515, 557
AluI	AGCT	5 cut(s)	25, 46, 278, 515, 557
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	59, 72
AoxI	GGCC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	7, 319
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	27
BccI	CCATC	3 cut(s)	131, 143, 377
BfaI	CTAG	1 cut(s)	656
BfmI	CTRYAG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	7, 319
BmiI	GGNNCC	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	420
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	1 cut(s)	537
BsaAI	YACGTR	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 241
Bse1I	ACTGG	3 cut(s)	341, 430, 543
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	115, 241
BseMII	CTCAG	2 cut(s)	45, 171
BseNI	ACTGG	3 cut(s)	341, 430, 543
BseRI	GAGGAG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	115, 241
BsmI	GAATGC	2 cut(s)	454, 538
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	44, 172
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	59, 72
BsrI	ACTGG	3 cut(s)	341, 430, 543
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	4 cut(s)	86, 241, 251, 584
BstBAI	YACGTR	1 cut(s)	104
BstDEI	CTNAG	4 cut(s)	31, 180, 479, 593
BstEII	GGTNACC	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	7, 319
Csp6I	GTAC	2 cut(s)	331, 650
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	8 cut(s)	9, 25, 46, 278, 306, 371, 515, 557
CviKI_1	RGCY	8 cut(s)	9, 25, 46, 278, 306, 371, 515, 557
CviQI	GTAC	2 cut(s)	331, 650
DdeI	CTNAG	4 cut(s)	31, 180, 479, 593
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	25
Eco91I	GGTNACC	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	505
FaiI	YATR	6 cut(s)	71, 225, 237, 263, 444, 503
FatI	CATG	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	40
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	3 cut(s)	294, 446, 632
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	41, 89, 620
Hpy188I	TCNGA	4 cut(s)	34, 160, 181, 350
Hpy188III	TCNNGA	2 cut(s)	380, 656
Hpy8I	GTNNAC	3 cut(s)	41, 89, 620
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	4 cut(s)	86, 241, 251, 584
HpyCH4IV	ACGT	2 cut(s)	103, 616
HpyCH4V	TGCA	4 cut(s)	433, 454, 608, 641
HpyF3I	CTNAG	4 cut(s)	31, 180, 479, 593
HpySE526I	ACGT	2 cut(s)	103, 616
Hsp92II	CATG	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	64
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	2 cut(s)	103, 616
MaeIII	GTNAC	4 cut(s)	104, 184, 245, 355
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	214, 273, 425
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	59, 97, 164, 642
MnlI	CCTC	5 cut(s)	175, 202, 247, 283, 344
MseI	TTAA	4 cut(s)	309, 389, 489, 645
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	2 cut(s)	454, 538
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	104, 184
PctI	GAATGC	2 cut(s)	454, 538
PfeI	GAWTC	3 cut(s)	294, 446, 632
PflMI	CCANNNNNTGG	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	27
PspEI	GGTNACC	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	7, 319
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	332, 651
RsaNI	GTAC	2 cut(s)	331, 650
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	309, 389, 489, 645
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	7, 319
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	319
Sse9I	AATT	4 cut(s)	59, 97, 164, 642
SspMI	CTAG	1 cut(s)	656
SstI	GAGCTC	1 cut(s)	27
TaaI	ACNGT	4 cut(s)	86, 241, 251, 584
TaiI	ACGT	2 cut(s)	106, 619
TaqII	GACCGA	1 cut(s)	307
TasI	AATT	4 cut(s)	59, 97, 164, 642
TatI	WGTACW	1 cut(s)	649
TfiI	GAWTC	3 cut(s)	294, 446, 632
Tru1I	TTAA	4 cut(s)	309, 389, 489, 645
Tru9I	TTAA	4 cut(s)	309, 389, 489, 645
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	2 cut(s)	104, 184
Tsp45I	GTSAC	2 cut(s)	104, 184
TspDTI	ATGAA	4 cut(s)	177, 215, 459, 510
TspRI	CASTG	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	40
XspI	CTAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.