Rh7DG318800

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002936
Physical Location & Seq
Forward (+)
37923396 .. 37924511
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG318800.1

Sequence Viewer

Length: 657 bp
ATGGAGGGCGGTTTTGCTGATGAGCTTTACTCAGAAAGTTTACAGCTATCAAAATTGCAATTGGGTTCCACATCGAATGTCACCAGTATACAAAGTGGTTTAGATGATCATGTTAAGGTTCAGTTGTCGGATGAAGATGGATCTTCATGGTGTGGTTCTGATAACGAAGTGAATGAAGCCTCTGATATGGACAAGGAATGGCAGAGGAGACGTGACCAATTCCATACGATGGGATACCGTGACGGTGTTATAGCCGGAAAGGAAGCTTCTTCTCAGGAGGGATTCAATATTGGCTTTAAGCAATCAGTCCTTGTTGGTTACAACTGGGGTCTTGTGAGAGGTGTTACAAGTACATTGGCTTCCCTTCCAGATGGTATAAGGGAGAAGTTGATTGAAACAGAAGAACAAAGAACTCGATTTCAGGGATTGTATGAATCTGTTCATTCCCTTTCTACAACAGATGCCCTTGGGTTGTTTAACGATGAAATCACAAGTAAAAATGACAGAGAACAAGTTGAAAGTTCAGAGACTAGTTCTTTTGAAGTTGAAACTGGTCTGGAAGAGCAAAGATTTGACCTCAGTGGTCTAGGAAATTACTCTGCAAAGCTCCGTTCACTTCTTTTGGAGTCGCCTGGAATCAAAGTCAAGTTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

218

Amino Acids

24.18

Weight (kDa)

4.54

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 78 - 115 6e-10 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 1 cut(s) 88
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 148
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 5 cut(s) 286, 395, 518, 542, 548
AhlI ACTAGT 1 cut(s) 530
AjiI CACGTC 1 cut(s) 212
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 4 cut(s) 25, 46, 266, 607
AluI AGCT 4 cut(s) 25, 46, 266, 607
Alw26I GTCTC 2 cut(s) 202, 521
AlwI GGATC 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 343, 375
BccI CCATC 3 cut(s) 131, 223, 365
BciT130I CCWGG 1 cut(s) 633
BciVI GTATCC 1 cut(s) 227
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 202, 521
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 3 cut(s) 531, 587, 655
BfuI GTATCC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 633
BmgBI CACGTC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 633
BmrI ACTGGG 1 cut(s) 334
BmsI GCATC 1 cut(s) 451
BmuI ACTGGG 1 cut(s) 334
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BsaJI CCNNGG 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 84, 329, 556
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 45, 287, 592
BseNI ACTGG 3 cut(s) 84, 329, 556
BseRI GAGGAG 1 cut(s) 220
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 202, 521
BsmBI CGTCTC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 106, 140
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 3 cut(s) 44, 286, 591
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 555
BsrI ACTGG 3 cut(s) 84, 329, 556
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 2 cut(s) 106, 140
BssNAI GTATAC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 466
Bst1107I GTATAC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 2 cut(s) 239, 245
Bst6I CTCTTC 1 cut(s) 555
BstDEI CTNAG 3 cut(s) 31, 273, 578
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 109, 143
BstMAI GTCTC 2 cut(s) 202, 521
BstMBI GATC 2 cut(s) 106, 140
BstNI CCWGG 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 631
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BstZ17I GTATAC 1 cut(s) 89
BsuI GTATCC 1 cut(s) 227
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 586
Csp6I GTAC 1 cut(s) 351
CviAII CATG 2 cut(s) 110, 147
CviJI RGCY 8 cut(s) 25, 46, 179, 254, 266, 294, 359, 607
CviKI_1 RGCY 8 cut(s) 25, 46, 179, 254, 266, 294, 359, 607
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 3 cut(s) 31, 273, 578
DpnI GATC 2 cut(s) 108, 142
DpnII GATC 2 cut(s) 106, 140
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 2 cut(s) 113, 150
FaiI YATR 8 cut(s) 89, 111, 148, 188, 225, 251, 377, 432
FatI CATG 2 cut(s) 109, 146
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 88
FokI GGATG 1 cut(s) 143
FspBI CTAG 3 cut(s) 531, 587, 655
HapII CCGG 1 cut(s) 255
Hin1II CATG 2 cut(s) 113, 150
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 4 cut(s) 282, 434, 626, 636
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 41, 89, 614
Hpy188I TCNGA 5 cut(s) 34, 130, 160, 184, 526
Hpy188III TCNNGA 3 cut(s) 275, 368, 557
Hpy8I GTNNAC 3 cut(s) 41, 89, 614
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 2 cut(s) 239, 245
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 58, 602
HpyF3I CTNAG 3 cut(s) 31, 273, 578
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 2 cut(s) 113, 150
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 140
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 612
LweI GCATC 1 cut(s) 451
MaeI CTAG 3 cut(s) 531, 587, 655
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 5 cut(s) 79, 212, 239, 317, 343
MalI GATC 2 cut(s) 108, 142
MboI GATC 2 cut(s) 106, 140
MboII GAAGA 5 cut(s) 135, 146, 261, 413, 572
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 140
MluCI AATT 4 cut(s) 53, 59, 218, 592
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 190, 198, 271, 332, 587
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 3 cut(s) 114, 297, 477
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 633
MunI CAATTG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 633
NdeII GATC 2 cut(s) 106, 140
NlaIII CATG 2 cut(s) 113, 150
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 3 cut(s) 79, 212, 239
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 282, 434, 636
PflMI CCANNNNNTGG 1 cut(s) 229
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 631
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 3 cut(s) 114, 297, 477
Sau3AI GATC 2 cut(s) 106, 140
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 633
SetI ASST 8 cut(s) 27, 48, 120, 214, 268, 343, 579, 609
SfaNI GCATC 1 cut(s) 451
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 4 cut(s) 53, 59, 218, 592
SsiI CCGC 1 cut(s) 9
SspI AATATT 1 cut(s) 289
SspMI CTAG 3 cut(s) 531, 587, 655
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 2 cut(s) 239, 245
TaiI ACGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 74, 415
TasI AATT 4 cut(s) 53, 59, 218, 592
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 3 cut(s) 282, 434, 636
Tru1I TTAA 3 cut(s) 114, 297, 477
Tru9I TTAA 3 cut(s) 114, 297, 477
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 3 cut(s) 79, 212, 239
Tsp45I GTSAC 3 cut(s) 79, 212, 239
TspDTI ATGAA 6 cut(s) 135, 147, 189, 431, 447, 498
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 3 cut(s) 531, 587, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.