AT1G34570

Essential protein Yae1, N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002936
Physical Location & Seq
Reverse (-)
12654927 .. 12656605
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34570.1

Sequence Viewer

Length: 627 bp
ATGGAGCCGCCTGAAGATGGGAAGGTTAATTTCGCCAAAGAGCTTTATGGAGAAAGTTTGCAGATTTCGAAACTTAGTAATAAAGATCATGGTCTTGAGAATTTAGATGATCCCTTTTACGGAAGTTCAGATGAAGATTATAGTGAAGCTCGCGTGTTGGACAATGAGAATGAGCAGAGACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGTTGTCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTGCTGGTTACAAGTTTGGTATTGTTAGAGGTGTTTCTAGTGCGCTGGCTTTCCTCCCGGTTGAGTTTAGAGAAAAGCTTATCGATGAACAAGAAACTAGAGAGAAGTTTCAGAAATTACACAGTTCTGTGCATGCTCTTTCGACGGAAGTCGCAATGAAGCAGTTCTATGAAACTTTGACTACGAAACAAGGGGAAGAGAAGAGTGGAGAAGAAGGGCCCGACTCTTGTTCTGTTTCAGGTTCTTGTTCAGGTGTTAATGTCACAGCCGACTTAGGAAGCTATGTTACTGAGCTAAGTTCTCTTCTTGACAAATCTCCAACGATTGAAGTGAAATTTGATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yae1_N

Protein Analysis

208

Amino Acids

23.03

Weight (kDa)

4.71

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 68 - 105 1.7e-09 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
Acc16I TGCGCA 1 cut(s) 243
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 3 cut(s) 100, 188, 614
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 17, 119
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 1 cut(s) 608
AjiI CACGTC 1 cut(s) 182
AluBI AGCT 6 cut(s) 43, 149, 236, 358, 561, 574
AluI AGCT 6 cut(s) 43, 149, 236, 358, 561, 574
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 497
ApaI GGGCCC 1 cut(s) 501
ApoI RAATTY 3 cut(s) 100, 188, 614
Asp700I GAANNNNTTC 2 cut(s) 276, 443
AspLEI GCGC 2 cut(s) 244, 325
AspS9I GGNCC 2 cut(s) 497, 498
AsuC2I CCSGG 1 cut(s) 338
AsuII TTCGAA 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 501
BanII GRGCYC 1 cut(s) 501
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BccI CCATC 2 cut(s) 11, 206
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 2 cut(s) 318, 378
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 338
BmgBI CACGTC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 497, 498
BmiI GGNNCC 2 cut(s) 6, 499
BmrFI CCNGG 1 cut(s) 338
BoxI GACNNNNGTC 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 338
Bsa29I ATCGAT 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 119
Bse3DI GCAATG 1 cut(s) 441
BseCI ATCGAT 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 17, 119
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 1 cut(s) 561
BseSI GKGCMC 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 499
BshVI ATCGAT 1 cut(s) 363
BsiSI CCGG 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 17, 119
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 499
Bsp119I TTCGAA 1 cut(s) 68
Bsp120I GGGCCC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 2 cut(s) 85, 109
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 499
BspCNI CTCAG 1 cut(s) 562
BspDI ATCGAT 1 cut(s) 363
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 6, 499
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 441
BssMI GATC 2 cut(s) 85, 109
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 3 cut(s) 471, 476, 588
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 151, 327, 414
BstDEI CTNAG 4 cut(s) 74, 553, 570, 575
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 2 cut(s) 244, 325
BstKTI GATC 2 cut(s) 88, 112
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 85, 109
BstNSI RCATGY 1 cut(s) 416
BstPAI GACNNNNGTC 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 501
BstUI CGCG 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 1 cut(s) 499
BsuTUI ATCGAT 1 cut(s) 363
BtrI CACGTC 1 cut(s) 182
Cac8I GCNNGC 3 cut(s) 151, 327, 414
CfoI GCGC 2 cut(s) 244, 325
Cfr13I GGNCC 2 cut(s) 497, 498
ClaI ATCGAT 1 cut(s) 363
CviAII CATG 2 cut(s) 89, 413
DdeI CTNAG 4 cut(s) 74, 553, 570, 575
DpnI GATC 2 cut(s) 87, 111
DpnII GATC 2 cut(s) 85, 109
Eam1104I CTCTTC 3 cut(s) 471, 476, 588
EarI CTCTTC 3 cut(s) 471, 476, 588
Eco24I GRGCYC 1 cut(s) 501
Eco32I GATATC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 497
EcoRV GATATC 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 92, 416
FaiI YATR 9 cut(s) 48, 90, 141, 255, 267, 414, 450, 564, 625
FatI CATG 2 cut(s) 88, 412
Fnu4HI GCNGC 1 cut(s) 8
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 2 cut(s) 318, 378
FspI TGCGCA 1 cut(s) 243
GlaI GCGC 2 cut(s) 243, 324
GluI GCNGC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 499
HapII CCGG 1 cut(s) 338
HhaI GCGC 2 cut(s) 244, 325
Hin1II CATG 2 cut(s) 92, 416
Hin6I GCGC 2 cut(s) 242, 323
HinP1I GCGC 2 cut(s) 242, 323
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 272, 503
HpaII CCGG 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 130, 393
Hpy188III TCNNGA 4 cut(s) 95, 209, 226, 587
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 3 cut(s) 16, 242, 488
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 61, 412
HpyF3I CTNAG 4 cut(s) 74, 553, 570, 575
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 2 cut(s) 92, 416
HspAI GCGC 2 cut(s) 242, 323
Kzo9I GATC 2 cut(s) 85, 109
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 24, 186, 230, 270, 311, 351, 504, 516
MaeI CTAG 2 cut(s) 318, 378
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 3 cut(s) 287, 541, 565
MalI GATC 2 cut(s) 87, 111
MboI GATC 2 cut(s) 85, 109
MboII GAAGA 6 cut(s) 26, 146, 488, 493, 503, 575
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 5 cut(s) 28, 100, 188, 395, 614
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 2 cut(s) 138, 623
MnlI CCTC 2 cut(s) 302, 344
MroXI GAANNNNTTC 2 cut(s) 276, 443
MseI TTAA 2 cut(s) 27, 537
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 153
NciI CCSGG 1 cut(s) 338
NdeII GATC 2 cut(s) 85, 109
NlaIII CATG 2 cut(s) 92, 416
NlaIV GGNNCC 2 cut(s) 6, 499
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 541
NsbI TGCGCA 1 cut(s) 243
NspI RCATGY 1 cut(s) 416
NspV TTCGAA 1 cut(s) 68
PaeI GCATGC 1 cut(s) 416
PdmI GAANNNNTTC 2 cut(s) 276, 443
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
PshAI GACNNNNGTC 1 cut(s) 428
PsiI TTATAA 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 6, 499
PspOMI GGGCCC 1 cut(s) 497
PspPI GGNCC 2 cut(s) 497, 498
SaqAI TTAA 2 cut(s) 27, 537
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 2 cut(s) 85, 109
Sau96I GGNCC 2 cut(s) 497, 498
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 501
SfuI TTCGAA 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SphI GCATGC 1 cut(s) 416
Sse9I AATT 5 cut(s) 28, 100, 188, 395, 614
SsiI CCGC 1 cut(s) 8
SspMI CTAG 2 cut(s) 318, 378
StyD4I CCNGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 184
TaqI TCGA 3 cut(s) 68, 363, 422
TasI AATT 5 cut(s) 28, 100, 188, 395, 614
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 27, 537
Tru9I TTAA 2 cut(s) 27, 537
TseFI GTSAC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 4 cut(s) 147, 381, 452, 465
TspGWI ACGGA 2 cut(s) 135, 440
XapI RAATTY 3 cut(s) 100, 188, 614
XceI RCATGY 1 cut(s) 416
XmnI GAANNNNTTC 2 cut(s) 276, 443
XspI CTAG 2 cut(s) 318, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.