Rh1DG027300

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002936
Physical Location & Seq
Reverse (-)
4130079 .. 4130911
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG027300.1

Sequence Viewer

Length: 471 bp
ATGGACAAGGAATGGCAGAGGAGACGTGACCAATTCCATACGATGGGATACCGTGATGGTGTTATAGCTGGAAAGGAAGCTTCTTCTCAGGAAGGATTCAATATTGGCTTTAAGCAATCAGTCCATGTTGGTTACAACTGGGGTCTTGTGAGAGGTGTTACAAGCACATTGGCTTCCCTTCCAGATGGCATAAGGGAGAAGTTGATTGAAACAGAAGAACAAAGAACTCGATTTCAGGGATTGTATGAATCTGTTCATTCCCTTTCTACAACAGATGCCCTTGGGTTGTTTAACGATGAAATCACAAGTAAAAATGATAGAGAACAAATTGAAAGTTCAGAGACTAGTTCTTTTGAAGTTGAAACTGGTTTGGAAGAGCAAAGATTAGACCATAGTGGTCTAGGAAATTACTCTGCAAAGCTCCGTTCACTTCTTTTGGAGTCTCCTGGAATCGAAGTAAAGTTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

156

Amino Acids

17.62

Weight (kDa)

5.04

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 16 - 53 7.8e-11 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 5 cut(s) 100, 209, 332, 356, 362
AhlI ACTAGT 1 cut(s) 344
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 3 cut(s) 68, 80, 421
AluI AGCT 3 cut(s) 68, 80, 421
Alw26I GTCTC 3 cut(s) 16, 335, 447
Asp700I GAANNNNTTC 1 cut(s) 252
BccI CCATC 3 cut(s) 37, 50, 179
BciT130I CCWGG 1 cut(s) 447
BciVI GTATCC 1 cut(s) 41
BcoDI GTCTC 3 cut(s) 16, 335, 447
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 3 cut(s) 345, 401, 469
BfuI GTATCC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 447
BmgBI CACGTC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 447
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 143, 370
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 2 cut(s) 143, 370
BseRI GAGGAG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 3 cut(s) 16, 335, 447
BsmBI CGTCTC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 143, 370
BssECI CCNNGG 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 87
BstMAI GTCTC 3 cut(s) 16, 335, 447
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BsuI GTATCC 1 cut(s) 41
BtrI CACGTC 1 cut(s) 26
CviAII CATG 1 cut(s) 125
CviJI RGCY 5 cut(s) 68, 80, 108, 173, 421
CviKI_1 RGCY 5 cut(s) 68, 80, 108, 173, 421
DdeI CTNAG 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 1 cut(s) 128
FaiI YATR 6 cut(s) 39, 65, 126, 191, 246, 393
FatI CATG 1 cut(s) 124
FspBI CTAG 3 cut(s) 345, 401, 469
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 4 cut(s) 96, 248, 440, 450
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 2 cut(s) 89, 182
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 86, 188
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 1 cut(s) 128
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 426
LpnPI CCDG 8 cut(s) 54, 74, 124, 195, 221, 351, 432, 459
LweI GCATC 1 cut(s) 265
MaeI CTAG 3 cut(s) 345, 401, 469
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 3 cut(s) 26, 131, 157
MboII GAAGA 3 cut(s) 75, 227, 386
MluCI AATT 3 cut(s) 32, 327, 406
MlyI GAGTC 1 cut(s) 449
MnlI CCTC 2 cut(s) 12, 146
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 2 cut(s) 111, 291
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
NlaIII CATG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 3 cut(s) 96, 248, 450
PflMI CCANNNNNTGG 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 445
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 111, 291
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 447
SetI ASST 5 cut(s) 28, 70, 82, 157, 423
SfaNI GCATC 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 3 cut(s) 32, 327, 406
SspI AATATT 1 cut(s) 103
SspMI CTAG 3 cut(s) 345, 401, 469
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 229, 453
TasI AATT 3 cut(s) 32, 327, 406
TfiI GAWTC 3 cut(s) 96, 248, 450
Tru1I TTAA 2 cut(s) 111, 291
Tru9I TTAA 2 cut(s) 111, 291
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 245, 261, 312
TspGWI ACGGA 1 cut(s) 413
Van91I CCANNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 3 cut(s) 345, 401, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.