Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002539.1

Orthogroup ID

OG0002936

Physical Location & Seq

Genomic Coordinates Forward (+)

457689 .. 462155

Gene Structure 4467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002539.1_g000112.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgggcacccactggagtgtgaggccggtgcaggagtggtcagggagcggttgtgtaaggggagcggaattggatcgtcatcgtcttcgtcgagatgggaagagttggcgaaacaaggttgatgggaccggaccaccgacctcaacctcaaccaccttacatcttcgtcgccgtcgggttccccaagcaaggcccggccaagatccggatcgagaaacagagcagagatggcccagaatccgccgaaaaggttctgtcaccgtcatcgactcgccgggtgactacgaccaccgatctcaacctcaaccaccttacgtcttcgtcgccgttgggttccccaagcaagactcggccaagatccggatcgagaaacagagccgagatggcccagaatctgccggaaaggtttcgtcaccatcatcaactcgccgggcgacgacttctacagcaaagttttcaccgctgtggatcggactccgagtcgtggttcccgctcaagagatggagggcagttttgctgaggagctttactcagaaagtttacagctatcaaaaatccaattgggttccacatcgaacgtcaccgatcatggtaaggttcagttgtcggatgaagatggatcttcatggtgtggttctgatgacgaagtgaatgaagcctctgacatggacaaggaatggcagaggagacgtgaccaattccatacgatgggataccgtgatggtgttatagctggaaaggaagcttcttctcaggaaggattcaataatggctttaagcaatcagtccatgttggttacaactggggtcttgtgagaggcgttacaagcacattcgcttcccttccagatggcataagggagaagttgattgaaacagaagaacaaagaactcgatttcagggattgtatgaatctgttcattccctttctacaacaggtgcccttgggttgtttaacgatgaaatcacaagtaaaaatgatagagaacaaattgaaagttcagagactagttcttttgaagttgaaactggtttggaagagcaaagattagaccgtagtggtctaggaaattactctgcaaagctccgttcacttcttttggagtctcctggaatcaaagtaaagttcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_11 AAA_12 Aquarius_N

Protein Analysis

378

Amino Acids

42.26

Weight (kDa)

6.74

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34570 AT3G15750 AT3G15750 AT3G15750
fragaria_vesca	FvH4_3g19550 FvH4_5g29020
malus_domestica	MD00G1188600.v1.1 MD02G1294600.v1.1 MD07G1031900.v1.1
prunus_persica	Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1 Prupe.2G029400_v2.0.a1
pyrus_communis	pycom07g02300
rosa_chinensis	RchiOBHm_Chr1g0319701 RchiOBHm_Chr7g0218601
rosa_multiflora	Rmu_sc0002539.1_g000112
rosa_roxburghii	Rroxscaffold_3G00240760 Rroxscaffold_4G00328180
rosa_rugosa	Rorug01G0029500 Rorug01G0029600 Rorug05G0213200 Rorug05G0391300 Rorug07G0178700
rosa_samantha	Rh1AG041400 Rh1BG038700 Rh1CG042300 Rh1DG027300 Rh7AG319800 Rh7BG311800 Rh7CG336700 Rh7DG163300 Rh7DG318800
rosa_wichuraiana	Rw1G003440 Rw7G027240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	5, 941
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccBSI	CCGCTC	3 cut(s)	48, 65, 494
AccIII	TCCGGA	2 cut(s)	205, 360
AciI	CCGC	5 cut(s)	48, 65, 241, 461, 492
AclWI	GGATC	7 cut(s)	81, 197, 216, 352, 371, 476, 628
AcoI	YGGCCR	2 cut(s)	196, 351
AfiI	CCNNNNNNNGG	5 cut(s)	189, 205, 360, 484, 709
AgsI	TTSAA	5 cut(s)	766, 875, 998, 1022, 1028
AhdI	GACNNNNNGTC	1 cut(s)	479
AhlI	ACTAGT	1 cut(s)	1010
AjiI	CACGTC	1 cut(s)	692
AjnI	CCWGG	1 cut(s)	1111
AleI	CACNNNNGTG	2 cut(s)	15, 463
AluBI	AGCT	5 cut(s)	526, 547, 734, 746, 1087
AluI	AGCT	5 cut(s)	526, 547, 734, 746, 1087
Alw26I	GTCTC	3 cut(s)	682, 1001, 1113
AlwI	GGATC	7 cut(s)	81, 197, 216, 352, 371, 476, 628
AlwNI	CAGNNNCTG	1 cut(s)	395
Aor13HI	TCCGGA	2 cut(s)	205, 360
AoxI	GGCC	6 cut(s)	23, 191, 196, 230, 351, 385
Asp700I	GAANNNNTTC	3 cut(s)	250, 406, 918
AspS9I	GGNCC	5 cut(s)	126, 131, 192, 231, 386
AsuC2I	CCSGG	3 cut(s)	195, 276, 431
AsuHPI	GGTGA	5 cut(s)	250, 290, 405, 450, 574
AvaII	GGWCC	2 cut(s)	126, 131
BaeGI	GKGCMC	2 cut(s)	8, 946
BanI	GGYRCC	2 cut(s)	5, 941
BbsI	GAAGAC	2 cut(s)	77, 310
BbvCI	CCTCAGC	1 cut(s)	519
BceAI	ACGGC	2 cut(s)	156, 311
BciT130I	CCWGG	1 cut(s)	1113
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	3 cut(s)	195, 276, 431
BcoDI	GTCTC	3 cut(s)	682, 1001, 1113
BcuI	ACTAGT	1 cut(s)	1010
BfaI	CTAG	3 cut(s)	1011, 1067, 1135
BfmI	CTRYAG	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	384
Bme1390I	CCNGG	4 cut(s)	195, 276, 431, 1113
Bme18I	GGWCC	2 cut(s)	126, 131
BmeRI	GACNNNNNGTC	1 cut(s)	479
BmgBI	CACGTC	1 cut(s)	692
BmgT120I	GGNCC	5 cut(s)	126, 131, 192, 231, 386
BmiI	GGNNCC	7 cut(s)	7, 127, 180, 335, 489, 568, 943
BmrFI	CCNGG	4 cut(s)	195, 276, 431, 1113
BmrI	ACTGGG	1 cut(s)	814
BmuI	ACTGGG	1 cut(s)	814
BpiI	GAAGAC	2 cut(s)	77, 310
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	3 cut(s)	195, 276, 431
BsaBI	GATNNNNATC	3 cut(s)	78, 207, 362
BsaJI	CCNNGG	1 cut(s)	946
BsaWI	WCCGGW	3 cut(s)	128, 205, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	5 cut(s)	189, 205, 360, 484, 709
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	3 cut(s)	17, 809, 1036
Bse8I	GATNNNNATC	3 cut(s)	78, 207, 362
BseAI	TCCGGA	2 cut(s)	205, 360
BseBI	CCWGG	1 cut(s)	1113
BseDI	CCNNGG	1 cut(s)	946
BseGI	GGATG	1 cut(s)	616
BseJI	GATNNNNATC	3 cut(s)	78, 207, 362
BseLI	CCNNNNNNNGG	5 cut(s)	189, 205, 360, 484, 709
BseMII	CTCAG	3 cut(s)	510, 546, 767
BseNI	ACTGG	3 cut(s)	17, 809, 1036
BseRI	GAGGAG	2 cut(s)	536, 700
BseSI	GKGCMC	2 cut(s)	8, 946
BsgI	GTGCAG	1 cut(s)	50
BshFI	GGCC	6 cut(s)	25, 193, 198, 232, 353, 387
BshNI	GGYRCC	2 cut(s)	5, 941
BsiSI	CCGG	8 cut(s)	26, 129, 195, 206, 275, 361, 399, 430
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	5 cut(s)	189, 205, 360, 484, 709
BsmAI	GTCTC	3 cut(s)	682, 1001, 1113
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	6 cut(s)	25, 193, 198, 232, 353, 387
Bsp1286I	GDGCHC	2 cut(s)	8, 946
Bsp13I	TCCGGA	2 cut(s)	205, 360
Bsp143I	GATC	9 cut(s)	73, 202, 208, 293, 357, 363, 468, 586, 620
BspACI	CCGC	5 cut(s)	48, 65, 241, 461, 492
BspANI	GGCC	6 cut(s)	25, 193, 198, 232, 353, 387
BspCNI	CTCAG	3 cut(s)	511, 545, 766
BspEI	TCCGGA	2 cut(s)	205, 360
BspLI	GGNNCC	7 cut(s)	7, 127, 180, 335, 489, 568, 943
BspPI	GGATC	7 cut(s)	81, 197, 216, 352, 371, 476, 628
BspQI	GCTCTTC	1 cut(s)	1035
BspT107I	GGYRCC	2 cut(s)	5, 941
BsrBI	CCGCTC	3 cut(s)	48, 65, 494
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	3 cut(s)	17, 809, 1036
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	946
BssMI	GATC	9 cut(s)	73, 202, 208, 293, 357, 363, 468, 586, 620
BssT1I	CCWWGG	1 cut(s)	946
Bst2UI	CCWGG	1 cut(s)	1113
Bst4CI	ACNGT	3 cut(s)	262, 719, 1058
Bst6I	CTCTTC	2 cut(s)	95, 1035
BstDEI	CTNAG	3 cut(s)	519, 532, 753
BstF5I	GGATG	1 cut(s)	616
BstKTI	GATC	9 cut(s)	76, 205, 211, 296, 360, 366, 471, 589, 623
BstMAI	GTCTC	3 cut(s)	682, 1001, 1113
BstMBI	GATC	9 cut(s)	73, 202, 208, 293, 357, 363, 468, 586, 620
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 384, 828
BstNI	CCWGG	1 cut(s)	1113
BstSCI	CCNGG	4 cut(s)	193, 274, 429, 1111
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	2 cut(s)	8, 946
BstV2I	GAAGAC	2 cut(s)	77, 310
BstX2I	RGATCY	3 cut(s)	202, 357, 620
BstYI	RGATCY	3 cut(s)	202, 357, 620
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	6 cut(s)	25, 193, 198, 232, 353, 387
BtrI	CACGTC	1 cut(s)	692
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	5 cut(s)	126, 131, 192, 231, 386
CviAII	CATG	4 cut(s)	590, 627, 667, 791
DdeI	CTNAG	3 cut(s)	519, 532, 753
DpnI	GATC	9 cut(s)	75, 204, 210, 295, 359, 365, 470, 588, 622
DpnII	GATC	9 cut(s)	73, 202, 208, 293, 357, 363, 468, 586, 620
DriI	GACNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	2 cut(s)	196, 351
Eam1104I	CTCTTC	2 cut(s)	95, 1035
Eam1105I	GACNNNNNGTC	1 cut(s)	479
EarI	CTCTTC	2 cut(s)	95, 1035
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	946
Eco47I	GGWCC	2 cut(s)	126, 131
EcoRII	CCWGG	1 cut(s)	1111
EcoT14I	CCWWGG	1 cut(s)	946
ErhI	CCWWGG	1 cut(s)	946
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	4 cut(s)	593, 630, 670, 794
FaiI	YATR	8 cut(s)	591, 628, 668, 705, 731, 792, 857, 912
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	4 cut(s)	589, 626, 666, 790
FauI	CCCGC	1 cut(s)	499
FokI	GGATG	1 cut(s)	623
FspBI	CTAG	3 cut(s)	1011, 1067, 1135
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	6 cut(s)	25, 193, 198, 232, 353, 387
HapII	CCGG	8 cut(s)	26, 129, 195, 206, 275, 361, 399, 430
Hin1II	CATG	4 cut(s)	593, 630, 670, 794
HindIII	AAGCTT	1 cut(s)	744
HpaII	CCGG	8 cut(s)	26, 129, 195, 206, 275, 361, 399, 430
HphI	GGTGA	5 cut(s)	250, 290, 405, 450, 574
Hpy166II	GTNNAC	2 cut(s)	542, 1094
Hpy188I	TCNGA	7 cut(s)	473, 479, 535, 610, 640, 664, 1006
Hpy188III	TCNNGA	8 cut(s)	92, 206, 212, 361, 367, 497, 755, 848
Hpy8I	GTNNAC	2 cut(s)	542, 1094
Hpy99I	CGWCG	5 cut(s)	93, 171, 177, 326, 439
HpyAV	CCTTC	2 cut(s)	752, 854
HpyCH4III	ACNGT	3 cut(s)	262, 719, 1058
HpyCH4IV	ACGT	3 cut(s)	315, 579, 691
HpyCH4V	TGCA	2 cut(s)	31, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 384, 828
HpyF3I	CTNAG	3 cut(s)	519, 532, 753
HpySE526I	ACGT	3 cut(s)	315, 579, 691
Hsp92II	CATG	4 cut(s)	593, 630, 670, 794
Kpn2I	TCCGGA	2 cut(s)	205, 360
Kzo9I	GATC	9 cut(s)	73, 202, 208, 293, 357, 363, 468, 586, 620
LguI	GCTCTTC	1 cut(s)	1035
LmnI	GCTCC	4 cut(s)	45, 62, 523, 1092
MaeI	CTAG	3 cut(s)	1011, 1067, 1135
MaeII	ACGT	3 cut(s)	315, 579, 691
MaeIII	GTNAC	7 cut(s)	256, 278, 411, 580, 692, 797, 823
MalI	GATC	9 cut(s)	75, 204, 210, 295, 359, 365, 470, 588, 622
MbiI	CCGCTC	3 cut(s)	48, 65, 494
MboI	GATC	9 cut(s)	73, 202, 208, 293, 357, 363, 468, 586, 620
MboII	GAAGA	9 cut(s)	77, 112, 155, 310, 615, 626, 741, 893, 1052
MfeI	CAATTG	1 cut(s)	560
MflI	RGATCY	3 cut(s)	202, 357, 620
MhlI	GDGCHC	2 cut(s)	8, 946
MluCI	AATT	5 cut(s)	68, 560, 698, 993, 1072
MlyI	GAGTC	5 cut(s)	263, 341, 468, 489, 1115
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	9 cut(s)	15, 151, 157, 312, 499, 514, 670, 678, 812
MroI	TCCGGA	2 cut(s)	205, 360
MroXI	GAANNNNTTC	3 cut(s)	250, 406, 918
MseI	TTAA	2 cut(s)	777, 957
MslI	CAYNNNNRTG	2 cut(s)	15, 463
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	8 cut(s)	26, 129, 195, 206, 275, 361, 399, 430
MspR9I	CCNGG	4 cut(s)	195, 276, 431, 1113
MunI	CAATTG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	3 cut(s)	229, 384, 828
NciI	CCSGG	3 cut(s)	195, 276, 431
NdeII	GATC	9 cut(s)	73, 202, 208, 293, 357, 363, 468, 586, 620
NlaIII	CATG	4 cut(s)	593, 630, 670, 794
NlaIV	GGNNCC	7 cut(s)	7, 127, 180, 335, 489, 568, 943
NmeAIII	GCCGAG	2 cut(s)	329, 404
NmuCI	GTSAC	5 cut(s)	256, 278, 411, 580, 692
OliI	CACNNNNGTG	2 cut(s)	15, 463
PciSI	GCTCTTC	1 cut(s)	1035
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PdmI	GAANNNNTTC	3 cut(s)	250, 406, 918
PfeI	GAWTC	5 cut(s)	237, 392, 762, 914, 1116
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	1111
PleI	GAGTC	5 cut(s)	263, 341, 468, 488, 1114
PpsI	GAGTC	5 cut(s)	263, 341, 468, 488, 1114
Psp6I	CCWGG	1 cut(s)	1111
PspGI	CCWGG	1 cut(s)	1111
PspN4I	GGNNCC	7 cut(s)	7, 127, 180, 335, 489, 568, 943
PspPI	GGNCC	5 cut(s)	126, 131, 192, 231, 386
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	3 cut(s)	202, 357, 620
RseI	CAYNNNNRTG	2 cut(s)	15, 463
SapI	GCTCTTC	1 cut(s)	1035
SaqAI	TTAA	2 cut(s)	777, 957
Sau3AI	GATC	9 cut(s)	73, 202, 208, 293, 357, 363, 468, 586, 620
Sau96I	GGNCC	5 cut(s)	126, 131, 192, 231, 386
SchI	GAGTC	5 cut(s)	263, 341, 468, 489, 1115
ScrFI	CCNGG	4 cut(s)	195, 276, 431, 1113
SduI	GDGCHC	2 cut(s)	8, 946
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	126, 131
SmiMI	CAYNNNNRTG	2 cut(s)	15, 463
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
SpeI	ACTAGT	1 cut(s)	1010
Sse9I	AATT	5 cut(s)	68, 560, 698, 993, 1072
SsiI	CCGC	5 cut(s)	48, 65, 241, 461, 492
SspMI	CTAG	3 cut(s)	1011, 1067, 1135
StyD4I	CCNGG	4 cut(s)	193, 274, 429, 1111
StyI	CCWWGG	1 cut(s)	946
TaaI	ACNGT	3 cut(s)	262, 719, 1058
TaiI	ACGT	3 cut(s)	318, 582, 694
TaqI	TCGA	6 cut(s)	91, 211, 267, 366, 575, 895
TasI	AATT	5 cut(s)	68, 560, 698, 993, 1072
TfiI	GAWTC	5 cut(s)	237, 392, 762, 914, 1116
Tru1I	TTAA	2 cut(s)	777, 957
Tru9I	TTAA	2 cut(s)	777, 957
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	5 cut(s)	256, 278, 411, 580, 692
Tsp45I	GTSAC	5 cut(s)	256, 278, 411, 580, 692
TspDTI	ATGAA	6 cut(s)	615, 627, 669, 911, 927, 978
TspGWI	ACGGA	1 cut(s)	1079
TspRI	CASTG	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	2 cut(s)	126, 131
XmnI	GAANNNNTTC	3 cut(s)	250, 406, 918
XspI	CTAG	3 cut(s)	1011, 1067, 1135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.