Rroxscaffold_3G00240760

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002936
Physical Location & Seq
Reverse (-)
32559012 .. 32560335
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240760.1

Sequence Viewer

Length: 465 bp
ATGTTGAGTGACCTTATGAGGATGGGATACCGTGATGTTGTTATAGCCGGAAAGGAAGCTTCTTCTCAGGAGGGATTCAATATTGGATTTAAGCAATCAGTCCTTGTTGGTTACAACTGGGGTCTTGTGAGAGGTGTTACAAGTATATTGGCTTCCCTTCCAGATGGCATAAGGGAGAAGTTGATTGAAACAGAAGAACAAATAAGAACTCGATTTCAGGGATTGTATGAATCTGTTCATTCCCTTTCTTCAACAGATGCCCTTGGGTTGTTTAACGATGAAATCACAAGTAAAAATGATAGAGAACAAGTTGAAAGTTCAGAGACTAGTTCTTTTGAAGTTGAAACTGGTCTGGAAGAGCAAAGAGTAGACCACAGTGGTCTAGGAAATTACTCTACAAAGCTCCGTTCACTTCTTTTGGAGTCGCCTGGAATCATAGTCAAGTTCCCCGTGACAAGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

154

Amino Acids

17.11

Weight (kDa)

4.89

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 9 - 46 1.9e-06 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AgsI TTSAA 6 cut(s) 79, 188, 252, 314, 338, 344
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 2 cut(s) 59, 403
AluI AGCT 2 cut(s) 59, 403
Alw26I GTCTC 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BccI CCATC 2 cut(s) 16, 158
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 317
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 2 cut(s) 327, 383
BfuI GTATCC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 429
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 122, 352
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 2 cut(s) 122, 352
BsiSI CCGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 351
BsrI ACTGG 2 cut(s) 122, 352
BssECI CCNNGG 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 2 cut(s) 32, 377
Bst6I CTCTTC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BsuI GTATCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 382
CviJI RGCY 4 cut(s) 47, 59, 152, 403
CviKI_1 RGCY 4 cut(s) 47, 59, 152, 403
DdeI CTNAG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaiI YATR 6 cut(s) 17, 44, 146, 170, 228, 437
FblI GTMKAC 1 cut(s) 369
FokI GGATG 1 cut(s) 34
FspBI CTAG 2 cut(s) 327, 383
HapII CCGG 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 4 cut(s) 75, 230, 422, 432
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 370, 410
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 3 cut(s) 68, 161, 353
Hpy8I GTNNAC 2 cut(s) 370, 410
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 32, 377
HpyF3I CTNAG 1 cut(s) 66
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 9 cut(s) 53, 61, 103, 174, 203, 333, 338, 414, 441
LweI GCATC 1 cut(s) 247
MaeI CTAG 2 cut(s) 327, 383
MaeIII GTNAC 4 cut(s) 8, 110, 136, 451
MboII GAAGA 4 cut(s) 54, 206, 240, 368
MluCI AATT 1 cut(s) 388
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 3 cut(s) 12, 64, 125
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 90, 273, 463
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
NmuCI GTSAC 2 cut(s) 8, 451
PciSI GCTCTTC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 75, 230, 432
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 90, 273, 463
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 429
SetI ASST 4 cut(s) 15, 61, 136, 405
SfaNI GCATC 1 cut(s) 247
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 1 cut(s) 388
SspI AATATT 1 cut(s) 82
SspMI CTAG 2 cut(s) 327, 383
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 32, 377
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 388
TfiI GAWTC 3 cut(s) 75, 230, 432
Tru1I TTAA 3 cut(s) 90, 273, 463
Tru9I TTAA 3 cut(s) 90, 273, 463
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 8, 451
Tsp45I GTSAC 2 cut(s) 8, 451
TspDTI ATGAA 3 cut(s) 227, 243, 294
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 327, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.