Rorug05G0391300

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002936
Physical Location & Seq
Reverse (-)
53360635 .. 53363510
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0391300.1

Sequence Viewer

Length: 531 bp
ATGACTTCTTCAACACCGCCGACGGCGTCTATGCCGTCGCCTGGTCCGATTCTCCGTCAAGCTCTACAACCTTGCCATCCCGCCGACCTGCAACCTCCTCCGCTCCCTCCACGAGCACAACTCGCGAGGTCAGCTCTGCTGACTACAAACCCACGCCCCGCGACTCGTTTCTCACCGTCTCGTGGGACGACACCGAGAAGCTCTGGACCGTTGACCGTCCCGCCTCCATCAGCACCTTCGAGGAGCACGCCTACTGTGTCTACTCCGCCGTCTTTGGTTGATTCAACAAGAACTATGACTGGTGACCTTTCTAATCCATTGCTGGTTAAACCTCTTCAACCAGTTGCTGCGCCAGTGGCTCTAGTAGCTCAAAAATCTGATGCACCTGATCGTCTTAATAATTTAGTTGGCGCTGGGTATCAATCATTTGAGAATGTTGTTTTGAAGAAACTCGCACAGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTTTTTTTACTCTTCTCGGGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

176

Amino Acids

18.48

Weight (kDa)

11.13

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 260
AccII CGCG 2 cut(s) 125, 161
AciI CCGC 6 cut(s) 17, 81, 101, 159, 221, 266
AcyI GRCGYC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 41, 182
AgsI TTSAA 4 cut(s) 12, 285, 338, 445
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 4 cut(s) 62, 134, 201, 368
AluI AGCT 4 cut(s) 62, 134, 201, 368
Alw21I GWGCWC 2 cut(s) 118, 248
Alw26I GTCTC 1 cut(s) 183
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 520
ApeKI GCWGC 1 cut(s) 347
AspLEI GCGC 2 cut(s) 352, 413
AspS9I GGNCC 2 cut(s) 44, 206
AsuHPI GGTGA 2 cut(s) 165, 314
AvaI CYCGRG 1 cut(s) 520
AvaII GGWCC 2 cut(s) 44, 206
BauI CACGAG 2 cut(s) 111, 180
Bbv12I GWGCWC 2 cut(s) 118, 248
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 84, 235
BceAI ACGGC 3 cut(s) 19, 39, 253
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 362
BfoI RGCGCY 1 cut(s) 414
BfuAI ACCTGC 1 cut(s) 96
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 2 cut(s) 44, 206
BmeT110I CYCGRG 1 cut(s) 520
BmgT120I GGNCC 2 cut(s) 44, 206
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 370, 485
BplI GAGNNNNNCTC 4 cut(s) 105, 137, 118, 150
BsaHI GRCGYC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 182
Bse1I ACTGG 3 cut(s) 304, 341, 353
Bse3DI GCAATG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 41, 182
BseMI GCAATG 1 cut(s) 317
BseNI ACTGG 3 cut(s) 304, 341, 353
BseRI GAGGAG 2 cut(s) 87, 256
BseXI GCAGC 1 cut(s) 334
BseYI CCCAGC 1 cut(s) 413
Bsh1236I CGCG 2 cut(s) 125, 161
BsiHKAI GWGCWC 2 cut(s) 118, 248
BsiHKCI CYCGRG 1 cut(s) 520
BslFI GGGAC 3 cut(s) 199, 203, 475
BslI CCNNNNNNNGG 2 cut(s) 41, 182
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 3 cut(s) 199, 203, 475
BsoBI CYCGRG 1 cut(s) 520
Bsp1286I GDGCHC 2 cut(s) 118, 248
Bsp143I GATC 1 cut(s) 388
Bsp68I TCGCGA 1 cut(s) 125
BspACI CCGC 6 cut(s) 17, 81, 101, 159, 221, 266
BspFNI CGCG 2 cut(s) 125, 161
BspMI ACCTGC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 317
BsrI ACTGG 3 cut(s) 304, 341, 353
BssMI GATC 1 cut(s) 388
BssNI GRCGYC 1 cut(s) 26
BssSI CACGAG 2 cut(s) 111, 180
Bst2BI CACGAG 2 cut(s) 111, 180
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 4 cut(s) 177, 210, 217, 256
Bst6I CTCTTC 2 cut(s) 339, 521
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 248
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 2 cut(s) 125, 161
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 2 cut(s) 352, 413
BstKTI GATC 1 cut(s) 391
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 388
BstMWI GCNNNNNNNGC 4 cut(s) 122, 131, 356, 365
BstNI CCWGG 1 cut(s) 42
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 40
BstUI CGCG 2 cut(s) 125, 161
BstV1I GCAGC 1 cut(s) 334
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 360
BtuMI TCGCGA 1 cut(s) 125
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 248
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 2 cut(s) 352, 413
Cfr13I GGNCC 2 cut(s) 44, 206
CseI GACGC 1 cut(s) 15
CviJI RGCY 5 cut(s) 62, 134, 201, 359, 368
CviKI_1 RGCY 5 cut(s) 62, 134, 201, 359, 368
DpnI GATC 1 cut(s) 390
DpnII GATC 1 cut(s) 388
Eam1104I CTCTTC 2 cut(s) 339, 521
EarI CTCTTC 2 cut(s) 339, 521
EciI GGCGGA 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 44, 206
Eco88I CYCGRG 1 cut(s) 520
Eco91I GGTNACC 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 500
Esp3I CGTCTC 1 cut(s) 183
FaiI YATR 3 cut(s) 32, 296, 500
FaqI GGGAC 3 cut(s) 199, 203, 475
FauI CCCGC 3 cut(s) 88, 166, 228
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 362
GlaI GCGC 2 cut(s) 351, 412
GluI GCNGC 1 cut(s) 348
GsaI CCCAGC 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 414
HgaI GACGC 1 cut(s) 15
HhaI GCGC 2 cut(s) 352, 413
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 2 cut(s) 350, 411
HinP1I GCGC 2 cut(s) 350, 411
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 3 cut(s) 49, 163, 281
HphI GGTGA 2 cut(s) 165, 314
Hpy166II GTNNAC 2 cut(s) 213, 261
Hpy188I TCNGA 2 cut(s) 48, 379
Hpy188III TCNNGA 2 cut(s) 124, 204
Hpy8I GTNNAC 2 cut(s) 213, 261
Hpy99I CGWCG 2 cut(s) 25, 40
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 4 cut(s) 177, 210, 217, 256
HpyCH4V TGCA 3 cut(s) 91, 383, 498
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 131, 356, 365
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 2 cut(s) 350, 411
Kzo9I GATC 1 cut(s) 388
LmnI GCTCC 2 cut(s) 108, 243
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 370, 485
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 390
MbiI CCGCTC 1 cut(s) 103
MboI GATC 1 cut(s) 388
MboII GAAGA 3 cut(s) 326, 457, 508
MhlI GDGCHC 2 cut(s) 118, 248
MluCI AATT 1 cut(s) 400
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 7 cut(s) 105, 108, 117, 120, 234, 234, 342
Mph1103I ATGCAT 1 cut(s) 500
MseI TTAA 3 cut(s) 327, 396, 476
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 2 cut(s) 125, 161
MwoI GCNNNNNNNGC 4 cut(s) 122, 131, 356, 365
NdeII GATC 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 302
NruI TCGCGA 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PfeI GAWTC 2 cut(s) 49, 281
PflFI GACNNNGTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 40
PspEI GGTNACC 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 413
PspGI CCWGG 1 cut(s) 40
PspPI GGNCC 2 cut(s) 44, 206
PstNI CAGNNNCTG 1 cut(s) 347
PsyI GACNNNGTC 1 cut(s) 25
RruI TCGCGA 1 cut(s) 125
SaqAI TTAA 3 cut(s) 327, 396, 476
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 1 cut(s) 388
Sau96I GGNCC 2 cut(s) 44, 206
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 2 cut(s) 118, 248
SfaNI GCATC 2 cut(s) 370, 485
SinI GGWCC 2 cut(s) 44, 206
Sse9I AATT 1 cut(s) 400
SsiI CCGC 6 cut(s) 17, 81, 101, 159, 221, 266
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 4 cut(s) 177, 210, 217, 256
TaqI TCGA 1 cut(s) 239
TasI AATT 1 cut(s) 400
TfiI GAWTC 2 cut(s) 49, 281
Tru1I TTAA 3 cut(s) 327, 396, 476
Tru9I TTAA 3 cut(s) 327, 396, 476
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 1 cut(s) 360
Tth111I GACNNNGTC 1 cut(s) 25
VpaK11BI GGWCC 2 cut(s) 44, 206
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.