FvH4_5g29020

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002936
Physical Location & Seq
Reverse (-)
20137375 .. 20143289
5915 bp
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UTR
Exon/CDS
Intron
FvH4_5g29020.t1

Sequence Viewer

Length: 639 bp
ATGGATAAAGCGACTATGAAGATATTACCGGAGGATATGATGAACCGGACTCTGCACACTTGCCTTGACCTCGCGCAAAAGCTCTGGGATATACTAGAAGGCATCAGAAGCCAAGCGACTGTTCTTCAAGTTGGGAGATGGAGGGCAGTTTCGCTCAAGAGCTTTACTCTCAAAGTTTACAACACTGATTTAGATTTTGCTGATAGCTATAAGCCTATAAGCTTATTATCACTACATGATCATGGTAAGGTTCAGTTGTCAGATGAAGATGAATCTTCATGGTATGGTTCTGATGATGAAGTGAATGTAGCATCTGATATGGACAAGCAATGGCAGAGGAGACATGACCAATTCCATACGATGGGATACCGTGATGGTGTTATGGCGGGAAAGGAAGCATCTTCTCAGGAGGGATTCAATATTGGCTTTAAGCAATCAGTCCTTGTTGGTTTCAACTGGGGTCTTGTAAGAGGTGTTGTAAGGATACTTGCAGCAGTTAATGCATGCATGAGAGACCTCTCCCTTGAGAGAAGACTACGTCCGCTTAGAATGTTTCCCCATAAGCGTGACCAAGTAGTCATTTGTAGCACTACATGTGTGGGGAGATCAGTAAGGGAAGGCTCTCCTTTTTACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

213

Amino Acids

24.28

Weight (kDa)

8.34

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 122 - 160 5.8e-10 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 575
AccB7I CCANNNNNTGG 1 cut(s) 361
AccII CGCG 1 cut(s) 74
AciI CCGC 2 cut(s) 386, 542
AfiI CCNNNNNNNGG 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 593
AgsI TTSAA 3 cut(s) 128, 418, 454
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 4 cut(s) 82, 162, 207, 222
AluI AGCT 4 cut(s) 82, 162, 207, 222
Alw26I GTCTC 2 cut(s) 334, 507
ApeKI GCWGC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 503
BccI CCATC 3 cut(s) 132, 355, 368
BciVI GTATCC 2 cut(s) 359, 477
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 334, 507
BfaI CTAG 1 cut(s) 95
BfuI GTATCC 2 cut(s) 359, 477
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 3 cut(s) 111, 320, 407
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 538
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpuEI CTTGAG 2 cut(s) 140, 545
BsaI GGTCTC 1 cut(s) 507
BsaWI WCCGGW 2 cut(s) 28, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 1 cut(s) 461
BseRI GAGGAG 1 cut(s) 352
BseXI GCAGC 1 cut(s) 503
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 74
BsiSI CCGG 2 cut(s) 29, 46
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 334, 507
Bso31I GGTCTC 1 cut(s) 507
Bsp143I GATC 2 cut(s) 238, 605
BspACI CCGC 2 cut(s) 386, 542
BspCNI CTCAG 1 cut(s) 418
BspFNI CGCG 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 461
BssMI GATC 2 cut(s) 238, 605
Bst4CI ACNGT 2 cut(s) 121, 371
BstAPI GCANNNNNTGC 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 2 cut(s) 405, 545
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 241, 608
BstMAI GTCTC 2 cut(s) 334, 507
BstMBI GATC 2 cut(s) 238, 605
BstMWI GCNNNNNNNGC 2 cut(s) 108, 500
BstNSI RCATGY 2 cut(s) 507, 597
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 503
BstV2I GAAGAC 1 cut(s) 538
BsuI GTATCC 2 cut(s) 359, 477
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 505
CfoI GCGC 1 cut(s) 76
CviAII CATG 7 cut(s) 236, 242, 279, 344, 504, 508, 594
CviJI RGCY 8 cut(s) 82, 111, 162, 207, 214, 222, 426, 621
CviKI_1 RGCY 8 cut(s) 82, 111, 162, 207, 214, 222, 426, 621
DdeI CTNAG 2 cut(s) 405, 545
DpnI GATC 2 cut(s) 240, 607
DpnII GATC 2 cut(s) 238, 605
DrdI GACNNNNNNGTC 1 cut(s) 575
DseDI GACNNNNNNGTC 1 cut(s) 575
Eco31I GGTCTC 1 cut(s) 507
EcoT22I ATGCAT 2 cut(s) 505, 509
FaeI CATG 7 cut(s) 239, 245, 282, 347, 507, 511, 597
FatI CATG 7 cut(s) 235, 241, 278, 343, 503, 507, 593
FauI CCCGC 1 cut(s) 379
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 492
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 492
HapII CCGG 2 cut(s) 29, 46
HhaI GCGC 1 cut(s) 76
Hin1II CATG 7 cut(s) 239, 245, 282, 347, 507, 511, 597
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 3 cut(s) 49, 272, 414
HpaII CCGG 2 cut(s) 29, 46
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 107, 262, 292, 316
Hpy188III TCNNGA 2 cut(s) 157, 407
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 92, 611
HpyCH4III ACNGT 2 cut(s) 121, 371
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 4 cut(s) 55, 491, 503, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 500
HpyF3I CTNAG 2 cut(s) 405, 545
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 7 cut(s) 239, 245, 282, 347, 507, 511, 597
HspAI GCGC 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 238, 605
LpnPI CCDG 6 cut(s) 42, 59, 70, 392, 442, 619
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 3 cut(s) 111, 320, 407
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 1 cut(s) 566
MalI GATC 2 cut(s) 240, 607
MboI GATC 2 cut(s) 238, 605
MboII GAAGA 6 cut(s) 31, 116, 267, 278, 393, 543
MluCI AATT 1 cut(s) 350
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 7 cut(s) 25, 80, 135, 330, 403, 464, 527
Mph1103I ATGCAT 2 cut(s) 505, 509
MseI TTAA 2 cut(s) 429, 498
MslI CAYNNNNRTG 2 cut(s) 240, 564
MspI CCGG 2 cut(s) 29, 46
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 108, 500
NdeII GATC 2 cut(s) 238, 605
NlaIII CATG 7 cut(s) 239, 245, 282, 347, 507, 511, 597
NmuCI GTSAC 1 cut(s) 566
NsiI ATGCAT 2 cut(s) 505, 509
NspI RCATGY 2 cut(s) 507, 597
PaeI GCATGC 1 cut(s) 507
PciI ACATGT 1 cut(s) 593
PfeI GAWTC 2 cut(s) 272, 414
PflFI GACNNNGTC 1 cut(s) 537
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 1 cut(s) 493
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PscI ACATGT 1 cut(s) 593
PsyI GACNNNGTC 1 cut(s) 537
RseI CAYNNNNRTG 2 cut(s) 240, 564
SaqAI TTAA 2 cut(s) 429, 498
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 2 cut(s) 238, 605
SchI GAGTC 1 cut(s) 43
SfaNI GCATC 3 cut(s) 111, 320, 407
SmiMI CAYNNNNRTG 2 cut(s) 240, 564
SmlI CTYRAG 2 cut(s) 155, 524
SmoI CTYRAG 2 cut(s) 155, 524
SphI GCATGC 1 cut(s) 507
Sse9I AATT 1 cut(s) 350
SsiI CCGC 2 cut(s) 386, 542
SspI AATATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 121, 371
TaiI ACGT 1 cut(s) 541
TasI AATT 1 cut(s) 350
TfiI GAWTC 2 cut(s) 272, 414
Tru1I TTAA 2 cut(s) 429, 498
Tru9I TTAA 2 cut(s) 429, 498
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 6 cut(s) 32, 56, 267, 279, 285, 312
TspRI CASTG 1 cut(s) 190
Tth111I GACNNNGTC 1 cut(s) 537
Van91I CCANNNNNTGG 1 cut(s) 361
XceI RCATGY 2 cut(s) 507, 597
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 2 cut(s) 505, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.