RchiOBHm_Chr7g0218601

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002936
Physical Location & Seq
Forward (+)
36776341 .. 36777168
828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19568

Sequence Viewer

Length: 438 bp
ATGGAGGGTGGTTTTGCTGATGAGCTTTACTCAGAAAGTTTACAGCTATCAAAATTGCAATTGGGTTCCACATCGAATGTCACCAGTAAACAAAGTGGTTTAGATGATCATGTTAAGGTTCAGTTGTCGGATGAAGATGGATCTTCATGGTGTGGTTCTGATAACGAAGTGAATGAAGCCTCTGATGTGGACAAGGAATGGCAGAGGAGACGTGACCAATTCCATACGATGGGATACCGTGACGGTGTTATAGCCGGAAAGGAAGCTTCTTCTCAGGAGGGATTCAGTATTGGCTTTAAGCAATCAGTCCTTGTTGGTTACAACTGGGGTCTTTTTTTTTTTTGTTCCTCATACCTTATATGTTCTTTTTCTCTTCACTTATTCTGGTCTATCTTCAACCAAAATGAAGTACATTGGCTTCCCTTCCAGATGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

145

Amino Acids

16.44

Weight (kDa)

4.63

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 78 - 110 7.4e-07 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AclWI GGATC 1 cut(s) 148
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 397
AjiI CACGTC 1 cut(s) 212
AluBI AGCT 3 cut(s) 25, 46, 266
AluI AGCT 3 cut(s) 25, 46, 266
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
BccI CCATC 3 cut(s) 131, 223, 424
BciVI GTATCC 1 cut(s) 227
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 202
BfuI GTATCC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 67
BmrI ACTGGG 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 334
BplI GAGNNNNNCTC 2 cut(s) 14, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 84, 329
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 45, 287
BseNI ACTGG 2 cut(s) 84, 329
BseRI GAGGAG 1 cut(s) 220
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 202
BsmBI CGTCTC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 106, 140
BspCNI CTCAG 2 cut(s) 44, 286
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 148
BsrI ACTGG 2 cut(s) 84, 329
BssMI GATC 2 cut(s) 106, 140
Bst4CI ACNGT 2 cut(s) 239, 245
Bst6I CTCTTC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 31, 273
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 109, 143
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 106, 140
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuI GTATCC 1 cut(s) 227
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 410
CviAII CATG 2 cut(s) 110, 147
CviJI RGCY 7 cut(s) 25, 46, 179, 254, 266, 294, 418
CviKI_1 RGCY 7 cut(s) 25, 46, 179, 254, 266, 294, 418
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 2 cut(s) 31, 273
DpnI GATC 2 cut(s) 108, 142
DpnII GATC 2 cut(s) 106, 140
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 2 cut(s) 113, 150
FaiI YATR 8 cut(s) 111, 148, 225, 251, 352, 359, 361, 436
FatI CATG 2 cut(s) 109, 146
FbaI TGATCA 1 cut(s) 106
FokI GGATG 1 cut(s) 143
HapII CCGG 1 cut(s) 255
Hin1II CATG 2 cut(s) 113, 150
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 282
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 41, 89, 190
Hpy188I TCNGA 4 cut(s) 34, 130, 160, 184
Hpy188III TCNNGA 2 cut(s) 275, 427
Hpy8I GTNNAC 3 cut(s) 41, 89, 190
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 2 cut(s) 239, 245
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 58
HpyF3I CTNAG 2 cut(s) 31, 273
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 2 cut(s) 113, 150
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 140
LpnPI CCDG 5 cut(s) 97, 260, 268, 310, 370
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 4 cut(s) 79, 212, 239, 317
MalI GATC 2 cut(s) 108, 142
MboI GATC 2 cut(s) 106, 140
MboII GAAGA 5 cut(s) 135, 146, 261, 365, 385
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 140
MluCI AATT 3 cut(s) 53, 59, 218
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 4 cut(s) 190, 198, 271, 358
MseI TTAA 2 cut(s) 114, 297
MspI CCGG 1 cut(s) 255
MunI CAATTG 1 cut(s) 59
NdeII GATC 2 cut(s) 106, 140
NlaIII CATG 2 cut(s) 113, 150
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 3 cut(s) 79, 212, 239
PfeI GAWTC 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SaqAI TTAA 2 cut(s) 114, 297
Sau3AI GATC 2 cut(s) 106, 140
SetI ASST 6 cut(s) 27, 48, 120, 214, 268, 357
Sse9I AATT 3 cut(s) 53, 59, 218
TaaI ACNGT 2 cut(s) 239, 245
TaiI ACGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 74
TasI AATT 3 cut(s) 53, 59, 218
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 114, 297
Tru9I TTAA 2 cut(s) 114, 297
TseFI GTSAC 3 cut(s) 79, 212, 239
Tsp45I GTSAC 3 cut(s) 79, 212, 239
TspDTI ATGAA 4 cut(s) 135, 147, 189, 420
Van91I CCANNNNNTGG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.