Rh1AG041400

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002936
Physical Location & Seq
Forward (+)
7244751 .. 7247286
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG041400.1

Sequence Viewer

Length: 1071 bp
ATGCAATACTTTCTCCTTGTTTTTGGGAAAACCCGATATCGAGCCCAGAAGAAAAAAAAACCACCCGCCCTGCTGCCTTCTTCTTTTCCGATCACCCCGCCGACGTCTCCGGCCTCCTTCCGCCGAAATTTTTACATTGTTCTCTTCCTCTCTTCAAGAGAAACACACCCATACAAGTTTTCCCAATCTATCACCCACTGTATACAACGAATCGAAGAGAGAGAATTCGAGTTCTTAGGTGCATATGCCAAGCCTTGGGCACAGGCAATCATAATCGTTTCTTCAATCGCACCTCATTTTCCTTCATTGAGTCGTGGTTCAAACTCAAGAGAGATGGAGGGTAGTTTTGCTGAGGAACTTTACTCAGAAAGTTTACAGCTATCAAAAATCCAATTGGGTTCCACATCGAACGTCACCGATCATGGTAAGGTTCAGTTGTCGAGTGAAGATGGATCTTCATGGTGTGGTTCTGATGACGAAGTGAATGAAGCCTCTGACATGGATAAGGAATGGCAGAGGAGACGTGACCAATTCCATACGGTTGTTTTACAGTTTAAACTTTCGAATTTTTTCTTCGTCTATGTTCTGTTGTTTTTTAAATCAAGTGGTTCCAGTTCATCCTTAATTTTTGAAAATATGCAGATGGGATACCGTGATGGTGTTATAGCTGGAAAGGAAGCTTCTTCTCAGGAAGGATTCAATATTGGCTTTAAGCAATCAGTCCGTGTTGGTTACAACTGGGGTCTTGTGAGAGGTGTTACAAGCACATTGGCTTCCCTTCCAGATGGCATAAGGGAGAAGTTGATTGAAACAGAAGAACAAAGAACTCGATTTCAGGGATTGTATGAATCTGTTCATTCCCTTTCTACAACAGATGCCCTTGGGTTGTTTAACGATGAAATCACAAGTAGAAATGATACAGAACAAATTGAAAGTTCAGAGACTAGTTCTTTTGAAGTTGAAACTGGTTTGGAAGAGCAAAGATTAGACCGTAGTGGTCTAGGAAATTACTCTGCAAAGCTCCGTTCACTTCTTTTGGAGTCTCCTGGAATCAACGTAAAGTTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

356

Amino Acids

40.24

Weight (kDa)

5.82

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 216 - 253 1.3e-10 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 107
AccB7I CCANNNNNTGG 1 cut(s) 255
AccI GTMKAC 1 cut(s) 202
AciI CCGC 3 cut(s) 66, 98, 121
AclWI GGATC 1 cut(s) 460
AcsI RAATTY 3 cut(s) 127, 224, 565
AcyI GRCGYC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 9 cut(s) 156, 285, 321, 632, 700, 809, 932, 956, 962
AhlI ACTAGT 1 cut(s) 944
AjiI CACGTC 1 cut(s) 524
AjnI CCWGG 1 cut(s) 1045
AluBI AGCT 4 cut(s) 379, 668, 680, 1021
AluI AGCT 4 cut(s) 379, 668, 680, 1021
Alw26I GTCTC 4 cut(s) 111, 514, 935, 1047
AlwI GGATC 1 cut(s) 460
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 3 cut(s) 127, 224, 565
Asp700I GAANNNNTTC 2 cut(s) 569, 852
AsuHPI GGTGA 3 cut(s) 85, 184, 406
AsuII TTCGAA 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 262
BanII GRGCYC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 60
BccI CCATC 5 cut(s) 328, 443, 637, 650, 779
BciT130I CCWGG 1 cut(s) 1047
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 4 cut(s) 111, 514, 935, 1047
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 3 cut(s) 945, 1001, 1069
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 1047
BmgBI CACGTC 1 cut(s) 524
BmiI GGNNCC 2 cut(s) 400, 610
BmrFI CCNGG 1 cut(s) 1047
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 1 cut(s) 865
BmuI ACTGGG 1 cut(s) 748
Bpu10I CCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 254, 880
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 3 cut(s) 612, 743, 970
BseBI CCWGG 1 cut(s) 1047
BseDI CCNNGG 2 cut(s) 254, 880
BseGI GGATG 1 cut(s) 617
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 342, 378, 701
BseNI ACTGG 3 cut(s) 612, 743, 970
BseRI GAGGAG 1 cut(s) 532
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 4 cut(s) 111, 514, 935, 1047
BsmBI CGTCTC 2 cut(s) 111, 514
BsnI GGCC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 46, 262
Bsp143I GATC 3 cut(s) 90, 418, 452
BspACI CCGC 3 cut(s) 66, 98, 121
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 3 cut(s) 343, 377, 700
BspLI GGNNCC 2 cut(s) 400, 610
BspPI GGATC 1 cut(s) 460
BspQI GCTCTTC 1 cut(s) 969
BspT104I TTCGAA 1 cut(s) 563
BsrI ACTGG 3 cut(s) 612, 743, 970
BssECI CCNNGG 2 cut(s) 254, 880
BssMI GATC 3 cut(s) 90, 418, 452
BssNAI GTATAC 1 cut(s) 203
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 2 cut(s) 254, 880
Bst1107I GTATAC 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 1047
Bst4CI ACNGT 5 cut(s) 200, 541, 552, 653, 992
Bst6I CTCTTC 4 cut(s) 149, 157, 210, 969
BstACI GRCGYC 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 563
BstDEI CTNAG 4 cut(s) 235, 351, 364, 687
BstF5I GGATG 1 cut(s) 617
BstKTI GATC 3 cut(s) 93, 421, 455
BstMAI GTCTC 4 cut(s) 111, 514, 935, 1047
BstMBI GATC 3 cut(s) 90, 418, 452
BstNI CCWGG 1 cut(s) 1047
BstSCI CCNGG 1 cut(s) 1045
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BstZ17I GTATAC 1 cut(s) 203
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 1 cut(s) 113
BtrI CACGTC 1 cut(s) 524
BtsCI GGATG 1 cut(s) 617
BtsIMutI CAGTG 1 cut(s) 196
CviAII CATG 3 cut(s) 422, 459, 499
DdeI CTNAG 4 cut(s) 235, 351, 364, 687
DpnI GATC 3 cut(s) 92, 420, 454
DpnII GATC 3 cut(s) 90, 418, 452
DraI TTTAAA 2 cut(s) 556, 598
Eam1104I CTCTTC 4 cut(s) 149, 157, 210, 969
EarI CTCTTC 4 cut(s) 149, 157, 210, 969
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 2 cut(s) 254, 880
Eco24I GRGCYC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 38
EcoT14I CCWWGG 2 cut(s) 254, 880
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 254, 880
Esp3I CGTCTC 2 cut(s) 111, 514
FaeI CATG 3 cut(s) 425, 462, 502
FatI CATG 3 cut(s) 421, 458, 498
FauI CCCGC 2 cut(s) 73, 105
FauNDI CATATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 604
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 3 cut(s) 945, 1001, 1069
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 3 cut(s) 425, 462, 502
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 6 cut(s) 210, 310, 696, 848, 1040, 1050
HpaII CCGG 1 cut(s) 110
HphI GGTGA 3 cut(s) 85, 184, 406
Hpy166II GTNNAC 3 cut(s) 203, 374, 1028
Hpy188I TCNGA 5 cut(s) 90, 367, 472, 496, 940
Hpy188III TCNNGA 4 cut(s) 156, 327, 689, 782
Hpy8I GTNNAC 3 cut(s) 203, 374, 1028
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 5 cut(s) 87, 127, 312, 686, 788
HpyCH4III ACNGT 5 cut(s) 200, 541, 552, 653, 992
HpyCH4IV ACGT 4 cut(s) 104, 411, 523, 1056
HpyCH4V TGCA 4 cut(s) 4, 242, 640, 1016
HpyF3I CTNAG 4 cut(s) 235, 351, 364, 687
HpySE526I ACGT 4 cut(s) 104, 411, 523, 1056
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 3 cut(s) 425, 462, 502
Kzo9I GATC 3 cut(s) 90, 418, 452
LguI GCTCTTC 1 cut(s) 969
LmnI GCTCC 1 cut(s) 1026
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 1 cut(s) 865
MaeI CTAG 3 cut(s) 945, 1001, 1069
MaeII ACGT 4 cut(s) 104, 411, 523, 1056
MaeIII GTNAC 4 cut(s) 412, 524, 731, 757
MalI GATC 3 cut(s) 92, 420, 454
MboI GATC 3 cut(s) 90, 418, 452
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 2 cut(s) 46, 262
MluCI AATT 8 cut(s) 127, 224, 392, 530, 565, 624, 927, 1006
MlyI GAGTC 2 cut(s) 319, 1049
MnlI CCTC 8 cut(s) 124, 158, 303, 331, 346, 502, 510, 746
MroXI GAANNNNTTC 2 cut(s) 569, 852
MseI TTAA 5 cut(s) 555, 597, 623, 711, 891
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 1047
MssI GTTTAAAC 1 cut(s) 556
MunI CAATTG 1 cut(s) 392
MvaI CCWGG 1 cut(s) 1047
NdeI CATATG 1 cut(s) 244
NdeII GATC 3 cut(s) 90, 418, 452
NlaIII CATG 3 cut(s) 425, 462, 502
NlaIV GGNNCC 2 cut(s) 400, 610
NmuCI GTSAC 2 cut(s) 412, 524
NspV TTCGAA 1 cut(s) 563
PciSI GCTCTTC 1 cut(s) 969
PdmI GAANNNNTTC 2 cut(s) 569, 852
PfeI GAWTC 4 cut(s) 210, 696, 848, 1050
PflMI CCANNNNNTGG 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 1045
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 2 cut(s) 318, 1048
PmeI GTTTAAAC 1 cut(s) 556
PpsI GAGTC 2 cut(s) 318, 1048
Psp6I CCWGG 1 cut(s) 1045
PspGI CCWGG 1 cut(s) 1045
PspN4I GGNNCC 2 cut(s) 400, 610
PsuI RGATCY 1 cut(s) 452
SapI GCTCTTC 1 cut(s) 969
SaqAI TTAA 5 cut(s) 555, 597, 623, 711, 891
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 3 cut(s) 90, 418, 452
SchI GAGTC 2 cut(s) 319, 1049
ScrFI CCNGG 1 cut(s) 1047
SduI GDGCHC 2 cut(s) 46, 262
SfaNI GCATC 1 cut(s) 865
SfuI TTCGAA 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
SpeI ACTAGT 1 cut(s) 944
Sse9I AATT 8 cut(s) 127, 224, 392, 530, 565, 624, 927, 1006
SsiI CCGC 3 cut(s) 66, 98, 121
SspI AATATT 1 cut(s) 703
SspMI CTAG 3 cut(s) 945, 1001, 1069
StyD4I CCNGG 1 cut(s) 1045
StyI CCWWGG 2 cut(s) 254, 880
TaaI ACNGT 5 cut(s) 200, 541, 552, 653, 992
TaiI ACGT 4 cut(s) 107, 414, 526, 1059
TaqI TCGA 7 cut(s) 40, 213, 228, 407, 440, 563, 829
TasI AATT 8 cut(s) 127, 224, 392, 530, 565, 624, 927, 1006
TfiI GAWTC 4 cut(s) 210, 696, 848, 1050
Tru1I TTAA 5 cut(s) 555, 597, 623, 711, 891
Tru9I TTAA 5 cut(s) 555, 597, 623, 711, 891
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 2 cut(s) 412, 524
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 2 cut(s) 412, 524
TspDTI ATGAA 7 cut(s) 294, 447, 501, 606, 845, 861, 912
TspGWI ACGGA 2 cut(s) 713, 1013
TspRI CASTG 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 255
XapI RAATTY 3 cut(s) 127, 224, 565
XmiI GTMKAC 1 cut(s) 202
XmnI GAANNNNTTC 2 cut(s) 569, 852
XspI CTAG 3 cut(s) 945, 1001, 1069
ZraI GACGTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.