Rw7G027240

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002936
Physical Location & Seq
Forward (+)
35088054 .. 35089159
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027240.1

Sequence Viewer

Length: 657 bp
ATGGAGGGCGGTTTGGCTGATGAGCTTTTCTCAGAAAGTTTACAGCTATCAAAATTGCAATTGGGTTCCACATCGAATGTCACCAGTAAACAAAGTGGTTTAGATGATCATGTTAAGGTTCAGTTGTCGGATGAAGATGGATCTTCATGGTGTGGTTCTGATAACGAAGTGAATGAAGCCTCTGATATGGACAAGGAATGGCAGAGGAGACGTGACCAATTCCATACGATGGGATACCGTGACGGTGTTATAGCCGGAAAGGAAGCTTCTTCTCAGGAGGGATTCAATATTGGCTTTAAGCAATCAGTCCTTGTTGGTTACAACTGTGGTCTTGTGAGAGGTGTTACAAGTACATTGGCTTCCCTTCCAGATGGTATAAGGGAGAAGTTGATTGAAACAGAAGAACAAAGAACTCGATTTCAGGGATTGTATGAATCTGTTCATTCCCTTTCTACAACAGATGCCCTTGGGCTGTTTAACGATGAAATCACAAGTAAAAATGACAGAGAACAAGTTGAAAGTTCAGAGACTAGTTCTTTTGAAGTTGAAACTGGTCTGGAAGAGCAAAGATTCGACCTCAGTGGTCTAGGAAATTACTCTGCAAAGCTCCGTTCACTTCTTTTGGAGTCGCCTGGAATCAAAGTCAAGTTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

218

Amino Acids

24.06

Weight (kDa)

4.59

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 78 - 115 9.9e-09 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 148
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 5 cut(s) 286, 395, 518, 542, 548
AhlI ACTAGT 1 cut(s) 530
AjiI CACGTC 1 cut(s) 212
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 4 cut(s) 25, 46, 266, 607
AluI AGCT 4 cut(s) 25, 46, 266, 607
Alw26I GTCTC 2 cut(s) 202, 521
AlwI GGATC 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 343, 375
BccI CCATC 3 cut(s) 131, 223, 365
BciT130I CCWGG 1 cut(s) 633
BciVI GTATCC 1 cut(s) 227
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 202, 521
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 3 cut(s) 531, 587, 655
BfuI GTATCC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 633
BmgBI CACGTC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 633
BmsI GCATC 1 cut(s) 451
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BsaJI CCNNGG 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 84, 556
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 45, 287, 592
BseNI ACTGG 2 cut(s) 84, 556
BseRI GAGGAG 1 cut(s) 220
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 202, 521
BsmBI CGTCTC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 106, 140
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 3 cut(s) 44, 286, 591
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 555
BsrI ACTGG 2 cut(s) 84, 556
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 2 cut(s) 106, 140
BssT1I CCWWGG 1 cut(s) 466
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 3 cut(s) 239, 245, 326
Bst6I CTCTTC 1 cut(s) 555
BstDEI CTNAG 3 cut(s) 31, 273, 578
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 109, 143
BstMAI GTCTC 2 cut(s) 202, 521
BstMBI GATC 2 cut(s) 106, 140
BstNI CCWGG 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 631
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuI GTATCC 1 cut(s) 227
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 586
Csp6I GTAC 1 cut(s) 351
CviAII CATG 2 cut(s) 110, 147
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 3 cut(s) 31, 273, 578
DpnI GATC 2 cut(s) 108, 142
DpnII GATC 2 cut(s) 106, 140
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 2 cut(s) 113, 150
FaiI YATR 7 cut(s) 111, 148, 188, 225, 251, 377, 432
FatI CATG 2 cut(s) 109, 146
FbaI TGATCA 1 cut(s) 106
FokI GGATG 1 cut(s) 143
FspBI CTAG 3 cut(s) 531, 587, 655
HapII CCGG 1 cut(s) 255
Hin1II CATG 2 cut(s) 113, 150
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 5 cut(s) 282, 434, 570, 626, 636
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 3 cut(s) 41, 89, 614
Hpy188I TCNGA 5 cut(s) 34, 130, 160, 184, 526
Hpy188III TCNNGA 3 cut(s) 275, 368, 557
Hpy8I GTNNAC 3 cut(s) 41, 89, 614
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 3 cut(s) 239, 245, 326
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 58, 602
HpyF3I CTNAG 3 cut(s) 31, 273, 578
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 2 cut(s) 113, 150
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 140
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 1 cut(s) 612
LpnPI CCDG 9 cut(s) 97, 260, 268, 381, 407, 537, 542, 618, 645
LweI GCATC 1 cut(s) 451
MaeI CTAG 3 cut(s) 531, 587, 655
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 5 cut(s) 79, 212, 239, 317, 343
MalI GATC 2 cut(s) 108, 142
MboI GATC 2 cut(s) 106, 140
MboII GAAGA 5 cut(s) 135, 146, 261, 413, 572
MfeI CAATTG 1 cut(s) 59
MflI RGATCY 1 cut(s) 140
MluCI AATT 4 cut(s) 53, 59, 218, 592
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 190, 198, 271, 332, 587
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 3 cut(s) 114, 297, 477
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 633
MunI CAATTG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 633
NdeII GATC 2 cut(s) 106, 140
NlaIII CATG 2 cut(s) 113, 150
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 3 cut(s) 79, 212, 239
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 4 cut(s) 282, 434, 570, 636
PflMI CCANNNNNTGG 1 cut(s) 229
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 631
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 3 cut(s) 114, 297, 477
Sau3AI GATC 2 cut(s) 106, 140
SchI GAGTC 1 cut(s) 635
ScrFI CCNGG 1 cut(s) 633
SetI ASST 8 cut(s) 27, 48, 120, 214, 268, 343, 579, 609
SfaNI GCATC 1 cut(s) 451
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 4 cut(s) 53, 59, 218, 592
SsiI CCGC 1 cut(s) 9
SspI AATATT 1 cut(s) 289
SspMI CTAG 3 cut(s) 531, 587, 655
StyD4I CCNGG 1 cut(s) 631
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 3 cut(s) 239, 245, 326
TaiI ACGT 1 cut(s) 214
TaqI TCGA 3 cut(s) 74, 415, 573
TasI AATT 4 cut(s) 53, 59, 218, 592
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 4 cut(s) 282, 434, 570, 636
Tru1I TTAA 3 cut(s) 114, 297, 477
Tru9I TTAA 3 cut(s) 114, 297, 477
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 3 cut(s) 79, 212, 239
Tsp45I GTSAC 3 cut(s) 79, 212, 239
TspDTI ATGAA 6 cut(s) 135, 147, 189, 431, 447, 498
TspGWI ACGGA 1 cut(s) 599
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 3 cut(s) 531, 587, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.